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curation_machine_learning_models

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Delete model_info.json

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  1. model_info.json +0 -158
model_info.json DELETED
@@ -1,158 +0,0 @@
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- {
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- "metric_params": {
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-
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- "quality_metric_params": {
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- "metric_names": [
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- "num_spikes",
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- "firing_rate",
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- "presence_ratio",
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- "snr",
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- "isi_violation",
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- "rp_violation",
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- "sliding_rp_violation",
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- "amplitude_cutoff",
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- "amplitude_median",
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- "amplitude_cv",
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- "synchrony",
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- "firing_range",
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- "drift",
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- "isolation_distance",
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- "l_ratio",
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- "d_prime",
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- "nearest_neighbor",
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- "silhouette"
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- ],
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- "sparsity": null,
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- "peak_sign": null,
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- "seed": null,
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- "qm_params": {
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- "presence_ratio": {
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- "bin_duration_s": 60,
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- "mean_fr_ratio_thresh": 0.0
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- },
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- "snr": {
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- "peak_sign": "neg",
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- "peak_mode": "extremum",
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- "random_chunk_kwargs_dict": null
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- },
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- "isi_violation": {
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- "isi_threshold_ms": 1.5,
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- "min_isi_ms": 0
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- },
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- "rp_violation": {
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- "refractory_period_ms": 1.0,
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- "censored_period_ms": 0.0
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- },
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- "sliding_rp_violation": {
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- "min_spikes": 0,
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- "bin_size_ms": 0.25,
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- "window_size_s": 1,
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- "exclude_ref_period_below_ms": 0.5,
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- "max_ref_period_ms": 10,
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- "contamination_values": null
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- },
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- "synchrony": {
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- "synchrony_sizes": [
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- 2,
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- 4,
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- 8
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- ]
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- },
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- "firing_range": {
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- "bin_size_s": 5,
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- "percentiles": [
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- 5,
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- 95
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- ]
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- },
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- "amplitude_cv": {
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- "average_num_spikes_per_bin": 50,
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- "percentiles": [
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- 5,
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- 95
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- ],
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- "min_num_bins": 10,
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- "amplitude_extension": "spike_amplitudes"
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- },
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- "amplitude_cutoff": {
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- "peak_sign": "neg",
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- "num_histogram_bins": 100,
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- "histogram_smoothing_value": 3,
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- "amplitudes_bins_min_ratio": 5
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- },
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- "amplitude_median": {
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- "peak_sign": "neg"
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- },
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- "drift": {
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- "interval_s": 60,
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- "min_spikes_per_interval": 100,
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- "direction": "y",
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- "min_num_bins": 2
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- },
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- "nearest_neighbor": {
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- "max_spikes": 10000,
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- "n_neighbors": 5
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- },
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- "nn_isolation": {
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- "max_spikes": 10000,
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- "min_spikes": 10,
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- "min_fr": 0.0,
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- "n_neighbors": 4,
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- "n_components": 10,
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- "radius_um": 100,
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- "peak_sign": "neg"
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- },
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- "nn_noise_overlap": {
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- "max_spikes": 10000,
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- "min_spikes": 10,
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- "min_fr": 0.0,
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- "n_neighbors": 4,
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- "n_components": 10,
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- "radius_um": 100,
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- "peak_sign": "neg"
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- },
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- "silhouette": {
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- "method": [
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- "simplified"
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- ]
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- }
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- },
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- "skip_pc_metrics": false
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- },
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- "template_metric_params": {
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- [
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- "half_width",
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- "num_negative_peaks",
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- "num_positive_peaks",
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- "peak_to_valley",
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- "peak_trough_ratio",
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- "recovery_slope",
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- "repolarization_slope"
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- ],
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- "sparsity": null,
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- "peak_sign": "neg",
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- "upsampling_factor": 10,
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- "metrics_kwargs": {
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- "recovery_window_ms": 0.7,
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- "peak_relative_threshold": 0.2,
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- "peak_width_ms": 0.1,
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- "depth_direction": "y",
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- "min_channels_for_velocity": 5,
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- "min_r2_velocity": 0.5,
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- "exp_peak_function": "ptp",
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- "min_r2_exp_decay": 0.5,
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- "spread_threshold": 0.2,
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- "spread_smooth_um": 20,
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- }
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- }
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-
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- },
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- "spikeinterface_info": {
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- "version": "0.100.0"
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- },
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- "label_conversion": {
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- "accept": "accept",
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- "reject": "accept"
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- }
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-
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- }