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55a855b
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Parent(s):
984abf9
Upload model_info.json
Browse files- model_info.json +159 -0
model_info.json
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| 1 |
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{
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| 2 |
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"metric_params": {
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| 3 |
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"analyzer_0": {
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| 4 |
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"quality_metric_params": {
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| 5 |
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"metric_names": [
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| 6 |
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"amplitude_cutoff",
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| 7 |
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"amplitude_cv",
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| 8 |
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"amplitude_median",
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| 9 |
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"d_prime",
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| 10 |
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"drift",
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| 11 |
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"firing_range",
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| 12 |
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"firing_rate",
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| 13 |
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"isi_violation",
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| 14 |
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"isolation_distance",
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| 15 |
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"l_ratio",
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| 16 |
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"nearest_neighbor",
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| 17 |
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"num_spikes",
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| 18 |
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"presence_ratio",
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| 19 |
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"rp_violation",
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| 20 |
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"sd_ratio",
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| 21 |
+
"silhouette",
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| 22 |
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"sliding_rp_violation",
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| 23 |
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"snr",
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| 24 |
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"synchrony"
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| 25 |
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],
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| 26 |
+
"peak_sign": null,
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| 27 |
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"seed": null,
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| 28 |
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"qm_params": {
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| 29 |
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"presence_ratio": {
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| 30 |
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"bin_duration_s": 60,
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| 31 |
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"mean_fr_ratio_thresh": 0.0
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| 32 |
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},
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| 33 |
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"snr": {
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| 34 |
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"peak_sign": "neg",
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| 35 |
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"peak_mode": "extremum"
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| 36 |
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},
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| 37 |
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"isi_violation": {
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| 38 |
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"isi_threshold_ms": 1.5,
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| 39 |
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"min_isi_ms": 0
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| 40 |
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},
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| 41 |
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"rp_violation": {
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| 42 |
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"refractory_period_ms": 1.0,
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| 43 |
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"censored_period_ms": 0.0
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| 44 |
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},
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| 45 |
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"sliding_rp_violation": {
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| 46 |
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"min_spikes": 0,
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| 47 |
+
"bin_size_ms": 0.25,
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| 48 |
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"window_size_s": 1,
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| 49 |
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"exclude_ref_period_below_ms": 0.5,
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| 50 |
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"max_ref_period_ms": 10,
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| 51 |
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"contamination_values": null
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| 52 |
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},
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| 53 |
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"synchrony": {
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| 54 |
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"synchrony_sizes": [
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| 55 |
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2,
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| 56 |
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4,
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| 57 |
+
8
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| 58 |
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]
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| 59 |
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},
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| 60 |
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"firing_range": {
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| 61 |
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"bin_size_s": 5,
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| 62 |
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"percentiles": [
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| 63 |
+
5,
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| 64 |
+
95
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| 65 |
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]
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| 66 |
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},
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| 67 |
+
"amplitude_cv": {
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| 68 |
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"average_num_spikes_per_bin": 50,
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| 69 |
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"percentiles": [
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| 70 |
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5,
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| 71 |
+
95
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| 72 |
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],
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| 73 |
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"min_num_bins": 10,
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| 74 |
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"amplitude_extension": "spike_amplitudes"
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| 75 |
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},
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| 76 |
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"amplitude_cutoff": {
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| 77 |
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"peak_sign": "neg",
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| 78 |
+
"num_histogram_bins": 100,
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| 79 |
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"histogram_smoothing_value": 3,
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| 80 |
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"amplitudes_bins_min_ratio": 5
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| 81 |
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},
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| 82 |
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"amplitude_median": {
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| 83 |
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"peak_sign": "neg"
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| 84 |
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},
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| 85 |
+
"drift": {
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| 86 |
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"interval_s": 60,
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| 87 |
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"min_spikes_per_interval": 100,
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| 88 |
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"direction": "y",
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| 89 |
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"min_num_bins": 2
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| 90 |
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},
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| 91 |
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"nearest_neighbor": {
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| 92 |
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"max_spikes": 10000,
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| 93 |
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"n_neighbors": 5
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| 94 |
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},
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| 95 |
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"nn_isolation": {
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| 96 |
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"max_spikes": 10000,
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| 97 |
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"min_spikes": 10,
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| 98 |
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"min_fr": 0.0,
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| 99 |
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"n_neighbors": 4,
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| 100 |
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"n_components": 10,
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| 101 |
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"radius_um": 100,
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| 102 |
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"peak_sign": "neg"
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| 103 |
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},
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| 104 |
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"nn_noise_overlap": {
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| 105 |
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"max_spikes": 10000,
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| 106 |
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"min_spikes": 10,
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| 107 |
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"min_fr": 0.0,
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| 108 |
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"n_neighbors": 4,
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| 109 |
+
"n_components": 10,
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| 110 |
+
"radius_um": 100,
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| 111 |
+
"peak_sign": "neg"
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| 112 |
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},
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| 113 |
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"silhouette": {
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| 114 |
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"method": [
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| 115 |
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"simplified"
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| 116 |
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]
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| 117 |
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}
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| 118 |
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},
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| 119 |
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"skip_pc_metrics": false
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| 120 |
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},
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| 121 |
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"template_metric_params": {
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| 122 |
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"metric_names": [
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| 123 |
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"half_width",
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| 124 |
+
"num_negative_peaks",
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| 125 |
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"num_positive_peaks",
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| 126 |
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"peak_to_valley",
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| 127 |
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"peak_trough_ratio",
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| 128 |
+
"recovery_slope",
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| 129 |
+
"repolarization_slope"
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| 130 |
+
],
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| 131 |
+
"sparsity": null,
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| 132 |
+
"peak_sign": "neg",
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| 133 |
+
"upsampling_factor": 10,
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| 134 |
+
"metrics_kwargs": {
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| 135 |
+
"recovery_window_ms": 0.7,
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| 136 |
+
"peak_relative_threshold": 0.2,
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| 137 |
+
"peak_width_ms": 0.1,
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| 138 |
+
"depth_direction": "y",
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| 139 |
+
"min_channels_for_velocity": 5,
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| 140 |
+
"min_r2_velocity": 0.5,
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| 141 |
+
"exp_peak_function": "ptp",
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| 142 |
+
"min_r2_exp_decay": 0.5,
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| 143 |
+
"spread_threshold": 0.2,
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| 144 |
+
"spread_smooth_um": 20,
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| 145 |
+
"column_range": null
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| 146 |
+
}
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| 147 |
+
}
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| 148 |
+
}
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| 149 |
+
},
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| 150 |
+
"requirements": {
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| 151 |
+
"spikeinterface": "0.100.1",
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| 152 |
+
"scikit-learn": "1.3.2"
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| 153 |
+
},
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| 154 |
+
"label_conversion": {
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| 155 |
+
"1": "noise",
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| 156 |
+
"2": "mua",
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| 157 |
+
"3" : "sua"
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| 158 |
+
}
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| 159 |
+
}
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