Hugging Face's logo

aryopg
/
biolinkbert_mediqa_binary_classifier

Text Classification
Transformers
Safetensors
bert
Inference Endpoints
Model card Files Community
aryopg commited on
Commit
ccce55b
•
1 Parent(s): 5d3d651

Training in progress, step 500

Browse files
Files changed (10) hide show
  1. adapter_config.json +31 -0
  2. adapter_model.safetensors +3 -0
  3. added_tokens.json +19 -0
  4. config.json +27 -0
  5. model.safetensors +3 -0
  6. special_tokens_map.json +65 -0
  7. tokenizer.json +0 -0
  8. tokenizer.model +3 -0
  9. tokenizer_config.json +193 -0
  10. training_args.bin +3 -0
adapter_config.json ADDED
@@ -0,0 +1,31 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "alpha_pattern": {},
3
+ "auto_mapping": null,
4
+ "base_model_name_or_path": "epfl-llm/meditron-7b",
5
+ "bias": "none",
6
+ "fan_in_fan_out": false,
7
+ "inference_mode": true,
8
+ "init_lora_weights": true,
9
+ "layers_pattern": null,
10
+ "layers_to_transform": null,
11
+ "loftq_config": {},
12
+ "lora_alpha": 16,
13
+ "lora_dropout": 0.1,
14
+ "megatron_config": null,
15
+ "megatron_core": "megatron.core",
16
+ "modules_to_save": null,
17
+ "peft_type": "LORA",
18
+ "r": 8,
19
+ "rank_pattern": {},
20
+ "revision": null,
21
+ "target_modules": [
22
+ "o_proj",
23
+ "up_proj",
24
+ "q_proj",
25
+ "down_proj",
26
+ "k_proj",
27
+ "gate_proj",
28
+ "v_proj"
29
+ ],
30
+ "task_type": "CAUSAL_LM"
31
+ }
adapter_model.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8ffb61ca9ce88a0c300f34fdb1d0b528798a9beb450bb07009ef3ae9d14058dc
3
+ size 40036488
added_tokens.json ADDED
@@ -0,0 +1,19 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "<CLS>": 32000,
3
+ "<EOD>": 32002,
4
+ "<MASK>": 32003,
5
+ "<PAD>": 32004,
6
+ "<SEP>": 32001,
7
+ "[/bib]": 32010,
8
+ "[/bib_ref]": 32006,
9
+ "[/fig]": 32012,
10
+ "[/fig_ref]": 32008,
11
+ "[/formula]": 32016,
12
+ "[/table]": 32014,
13
+ "[bib]": 32009,
14
+ "[bib_ref]": 32005,
15
+ "[fig]": 32011,
16
+ "[fig_ref]": 32007,
17
+ "[formula]": 32015,
18
+ "[table]": 32013
19
+ }
config.json ADDED
@@ -0,0 +1,27 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "_name_or_path": "michiyasunaga/BioLinkBERT-base",
3
+ "architectures": [
4
+ "BertForSequenceClassification"
5
+ ],
6
+ "attention_probs_dropout_prob": 0.1,
7
+ "classifier_dropout": null,
8
+ "gradient_checkpointing": false,
9
+ "hidden_act": "gelu",
10
+ "hidden_dropout_prob": 0.1,
11
+ "hidden_size": 768,
12
+ "initializer_range": 0.02,
13
+ "intermediate_size": 3072,
14
+ "layer_norm_eps": 1e-12,
15
+ "max_position_embeddings": 512,
16
+ "model_type": "bert",
17
+ "num_attention_heads": 12,
18
+ "num_hidden_layers": 12,
19
+ "pad_token_id": 0,
20
+ "position_embedding_type": "absolute",
21
+ "problem_type": "single_label_classification",
22
+ "torch_dtype": "float32",
23
+ "transformers_version": "4.36.0",
24
+ "type_vocab_size": 2,
25
+ "use_cache": true,
26
+ "vocab_size": 28895
27
+ }
model.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2f5cd06f3e1f49f7a207fd975c5c8496aeb0127ac1a6486a7d216a150890b0eb
3
+ size 432960488
special_tokens_map.json ADDED
@@ -0,0 +1,65 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "additional_special_tokens": [
3
+ "[bib_ref]",
4
+ "[/bib_ref]",
5
+ "[fig_ref]",
6
+ "[/fig_ref]",
7
+ "[bib]",
8
+ "[/bib]",
9
+ "[fig]",
10
+ "[/fig]",
11
+ "[table]",
12
+ "[/table]",
13
+ "[formula]",
14
+ "[/formula]"
15
+ ],
16
+ "bos_token": {
17
+ "content": "<s>",
18
+ "lstrip": false,
19
+ "normalized": true,
20
+ "rstrip": false,
21
+ "single_word": false
22
+ },
23
+ "cls_token": {
24
+ "content": "<CLS>",
25
+ "lstrip": false,
26
+ "normalized": false,
27
+ "rstrip": false,
28
+ "single_word": false
29
+ },
30
+ "eos_token": {
31
+ "content": "</s>",
32
+ "lstrip": false,
33
+ "normalized": true,
34
+ "rstrip": false,
35
+ "single_word": false
36
+ },
37
+ "mask_token": {
38
+ "content": "<MASK>",
39
+ "lstrip": false,
40
+ "normalized": false,
41
+ "rstrip": false,
42
+ "single_word": false
43
+ },
44
+ "pad_token": {
45
+ "content": "<PAD>",
46
+ "lstrip": false,
47
+ "normalized": false,
48
+ "rstrip": false,
49
+ "single_word": false
50
+ },
51
+ "sep_token": {
52
+ "content": "<SEP>",
53
+ "lstrip": false,
54
+ "normalized": false,
55
+ "rstrip": false,
56
+ "single_word": false
57
+ },
58
+ "unk_token": {
59
+ "content": "<unk>",
60
+ "lstrip": false,
61
+ "normalized": true,
62
+ "rstrip": false,
63
+ "single_word": false
64
+ }
65
+ }
tokenizer.json ADDED
The diff for this file is too large to render. See raw diff
 
tokenizer.model ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9e556afd44213b6bd1be2b850ebbbd98f5481437a8021afaf58ee7fb1818d347
3
+ size 499723
tokenizer_config.json ADDED
@@ -0,0 +1,193 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "add_bos_token": true,
3
+ "add_eos_token": false,
4
+ "added_tokens_decoder": {
5
+ "0": {
6
+ "content": "<unk>",
7
+ "lstrip": false,
8
+ "normalized": true,
9
+ "rstrip": false,
10
+ "single_word": false,
11
+ "special": true
12
+ },
13
+ "1": {
14
+ "content": "<s>",
15
+ "lstrip": false,
16
+ "normalized": true,
17
+ "rstrip": false,
18
+ "single_word": false,
19
+ "special": true
20
+ },
21
+ "2": {
22
+ "content": "</s>",
23
+ "lstrip": false,
24
+ "normalized": true,
25
+ "rstrip": false,
26
+ "single_word": false,
27
+ "special": true
28
+ },
29
+ "32000": {
30
+ "content": "<CLS>",
31
+ "lstrip": false,
32
+ "normalized": false,
33
+ "rstrip": false,
34
+ "single_word": false,
35
+ "special": true
36
+ },
37
+ "32001": {
38
+ "content": "<SEP>",
39
+ "lstrip": false,
40
+ "normalized": false,
41
+ "rstrip": false,
42
+ "single_word": false,
43
+ "special": true
44
+ },
45
+ "32002": {
46
+ "content": "<EOD>",
47
+ "lstrip": false,
48
+ "normalized": false,
49
+ "rstrip": false,
50
+ "single_word": false,
51
+ "special": true
52
+ },
53
+ "32003": {
54
+ "content": "<MASK>",
55
+ "lstrip": false,
56
+ "normalized": false,
57
+ "rstrip": false,
58
+ "single_word": false,
59
+ "special": true
60
+ },
61
+ "32004": {
62
+ "content": "<PAD>",
63
+ "lstrip": false,
64
+ "normalized": false,
65
+ "rstrip": false,
66
+ "single_word": false,
67
+ "special": true
68
+ },
69
+ "32005": {
70
+ "content": "[bib_ref]",
71
+ "lstrip": false,
72
+ "normalized": false,
73
+ "rstrip": false,
74
+ "single_word": false,
75
+ "special": true
76
+ },
77
+ "32006": {
78
+ "content": "[/bib_ref]",
79
+ "lstrip": false,
80
+ "normalized": false,
81
+ "rstrip": false,
82
+ "single_word": false,
83
+ "special": true
84
+ },
85
+ "32007": {
86
+ "content": "[fig_ref]",
87
+ "lstrip": false,
88
+ "normalized": false,
89
+ "rstrip": false,
90
+ "single_word": false,
91
+ "special": true
92
+ },
93
+ "32008": {
94
+ "content": "[/fig_ref]",
95
+ "lstrip": false,
96
+ "normalized": false,
97
+ "rstrip": false,
98
+ "single_word": false,
99
+ "special": true
100
+ },
101
+ "32009": {
102
+ "content": "[bib]",
103
+ "lstrip": false,
104
+ "normalized": false,
105
+ "rstrip": false,
106
+ "single_word": false,
107
+ "special": true
108
+ },
109
+ "32010": {
110
+ "content": "[/bib]",
111
+ "lstrip": false,
112
+ "normalized": false,
113
+ "rstrip": false,
114
+ "single_word": false,
115
+ "special": true
116
+ },
117
+ "32011": {
118
+ "content": "[fig]",
119
+ "lstrip": false,
120
+ "normalized": false,
121
+ "rstrip": false,
122
+ "single_word": false,
123
+ "special": true
124
+ },
125
+ "32012": {
126
+ "content": "[/fig]",
127
+ "lstrip": false,
128
+ "normalized": false,
129
+ "rstrip": false,
130
+ "single_word": false,
131
+ "special": true
132
+ },
133
+ "32013": {
134
+ "content": "[table]",
135
+ "lstrip": false,
136
+ "normalized": false,
137
+ "rstrip": false,
138
+ "single_word": false,
139
+ "special": true
140
+ },
141
+ "32014": {
142
+ "content": "[/table]",
143
+ "lstrip": false,
144
+ "normalized": false,
145
+ "rstrip": false,
146
+ "single_word": false,
147
+ "special": true
148
+ },
149
+ "32015": {
150
+ "content": "[formula]",
151
+ "lstrip": false,
152
+ "normalized": false,
153
+ "rstrip": false,
154
+ "single_word": false,
155
+ "special": true
156
+ },
157
+ "32016": {
158
+ "content": "[/formula]",
159
+ "lstrip": false,
160
+ "normalized": false,
161
+ "rstrip": false,
162
+ "single_word": false,
163
+ "special": true
164
+ }
165
+ },
166
+ "additional_special_tokens": [
167
+ "[bib_ref]",
168
+ "[/bib_ref]",
169
+ "[fig_ref]",
170
+ "[/fig_ref]",
171
+ "[bib]",
172
+ "[/bib]",
173
+ "[fig]",
174
+ "[/fig]",
175
+ "[table]",
176
+ "[/table]",
177
+ "[formula]",
178
+ "[/formula]"
179
+ ],
180
+ "bos_token": "<s>",
181
+ "clean_up_tokenization_spaces": false,
182
+ "cls_token": "<CLS>",
183
+ "eos_token": "</s>",
184
+ "legacy": true,
185
+ "mask_token": "<MASK>",
186
+ "model_max_length": 1000000000000000019884624838656,
187
+ "pad_token": "<PAD>",
188
+ "sep_token": "<SEP>",
189
+ "sp_model_kwargs": {},
190
+ "tokenizer_class": "LlamaTokenizer",
191
+ "unk_token": "<unk>",
192
+ "use_default_system_prompt": false
193
+ }
training_args.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:19f76d9d85733faa605af2eecf1e572ca7712e875d26ccfb9372afebdeb3ffb7
3
+ size 4728