Christina Theodoris
Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp
2f25aea
| from setuptools import setup | |
| setup( | |
| name="geneformer", | |
| version="0.1.0", | |
| author="Christina Theodoris", | |
| author_email="christina.theodoris@gladstone.ucsf.edu", | |
| description="Geneformer is a transformer model pretrained \ | |
| on a large-scale corpus of ~30 million single \ | |
| cell transcriptomes to enable context-aware \ | |
| predictions in settings with limited data in \ | |
| network biology.", | |
| packages=["geneformer"], | |
| include_package_data=True, | |
| install_requires=[ | |
| "datasets", | |
| "loompy", | |
| "numpy", | |
| "tdigest", | |
| "transformers", | |
| ], | |
| ) | |