GBI-16-4D.py

import os
import random
from glob import glob
import json
from huggingface_hub import hf_hub_download
from tqdm import tqdm
import numpy as np

from astropy.io import fits
from astropy.wcs import WCS
import datasets
from datasets import DownloadManager
from fsspec.core import url_to_fs


_DESCRIPTION = (
"GBI-16-4D is a dataset which is part of the AstroCompress project. It contains data "
"assembled from the Sloan Digital SkySurvey (SDSS). Each FITS file contains a series "
"of 800x800 pixel uint16 observations of the same portion of the Stripe82 field, "
"taken in 5 bandpass filters (u, g, r, i, z) over time. The filenames give the "
"starting run, field, camcol of the observations, the number of filtered images per "
"timestep, and the number of timesteps. For example: "
"`cube_center_run4203_camcol6_f44_35-5-800-800.fits` contains 35 frames of 800x800 "
"pixel images in 5 bandpasses starting with run 4203, field 44, and camcol 6. "
"The images are stored in the FITS standard."
)

_HOMEPAGE = "https://google.github.io/AstroCompress"

_LICENSE = "CC BY 4.0"

_URL = "https://huggingface.co/datasets/AstroCompress/GBI-16-4D/resolve/main/"

_URLS = {
    "tiny": {
        "train": "./splits/tiny_train.jsonl",
        "test": "./splits/tiny_test.jsonl",
    },
    "full": {
        "train": "./splits/full_train.jsonl",
        "test": "./splits/full_test.jsonl",
    }
}

_REPO_ID = "AstroCompress/GBI-16-4D"

class GBI_16_4D(datasets.GeneratorBasedBuilder):
    """GBI-16-4D Dataset"""

    VERSION = datasets.Version("1.0.3")

    BUILDER_CONFIGS = [
        datasets.BuilderConfig(
            name="tiny",
            version=VERSION,
            description="A small subset of the data, to test downsteam workflows.",
        ),
        datasets.BuilderConfig(
            name="full",
            version=VERSION,
            description="The full dataset",
        ),
    ]

    DEFAULT_CONFIG_NAME = "tiny"

    def __init__(self, **kwargs):
        super().__init__(version=self.VERSION, **kwargs)

    def _info(self):
        return datasets.DatasetInfo(
            description=_DESCRIPTION,
            features=datasets.Features(
                {
                    "image": datasets.Array4D(shape=(None, 5, 800, 800), dtype="uint16"),
                    "ra": datasets.Value("float64"),
                    "dec": datasets.Value("float64"),
                    "pixscale": datasets.Value("float64"),
                    "ntimes": datasets.Value("int64"),
                    "nbands": datasets.Value("int64"),
                    "image_id": datasets.Value("string"),
                }
            ),
            supervised_keys=None,
            homepage=_HOMEPAGE,
            license=_LICENSE,
            citation="TBD",
        )

    def _split_generators(self, dl_manager: DownloadManager):

        ret = []
        base_path = dl_manager._base_path
        locally_run = not base_path.startswith(datasets.config.HF_ENDPOINT) 
        _, path = url_to_fs(base_path)

        for split in ["train", "test"]:
            if locally_run:
                split_file_location = os.path.normpath(os.path.join(path, _URLS[self.config.name][split]))
                split_file = dl_manager.download_and_extract(split_file_location)
            else:
                split_file = hf_hub_download(repo_id=_REPO_ID, filename=_URLS[self.config.name][split], repo_type="dataset")
            with open(split_file, encoding="utf-8") as f:
                data_filenames = []
                data_metadata = []
                for line in f:
                    item = json.loads(line)
                    data_filenames.append(item["image"])
                    data_metadata.append({"ra": item["ra"], 
                                          "dec": item["dec"], 
                                          "pixscale": item["pixscale"], 
                                          "ntimes": item["ntimes"], 
                                          "nbands": item["nbands"],
                                          "image_id": item["image_id"]})
                if locally_run:
                    data_urls = [os.path.normpath(os.path.join(path,data_filename)) for data_filename in data_filenames]
                    data_files = [dl_manager.download(data_url) for data_url in data_urls]
                else:
                    data_urls = data_filenames
                    data_files = [hf_hub_download(repo_id=_REPO_ID, filename=data_url, repo_type="dataset") for data_url in data_urls]
            ret.append(
                datasets.SplitGenerator(
                    name=datasets.Split.TRAIN if split == "train" else datasets.Split.TEST,
                    gen_kwargs={"filepaths": data_files,
                                "split_file": split_file,
                                "split": split, 
                                "data_metadata": data_metadata},
                ),
            )
        return ret

    def _generate_examples(self, filepaths, split_file, split, data_metadata):
        """Generate GBI-16-4D examples"""

        for idx, (filepath, item) in enumerate(zip(filepaths, data_metadata)):
            task_instance_key = f"{self.config.name}-{split}-{idx}"
            with fits.open(filepath, memmap=False, ignore_missing_simple=True) as hdul:
                image_data = hdul[0].data.tolist()
                yield task_instance_key, {**{"image": image_data}, **item}