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.gitattributes

@@ -640,3 +640,5 @@ sub-CC00260XX05/ses-85300/anat/sub-CC00260XX05_ses-85300_space-T2w_thickness.dsc
 sub-CC00260XX05/ses-85300/anat/sub-CC00260XX05_ses-85300_space-T2w_sulc.dscalar.nii filter=lfs diff=lfs merge=lfs -text
 sub-CC00260XX05/ses-85300/anat/sub-CC00260XX05_ses-85300_space-T2w_myelinmap.dscalar.nii filter=lfs diff=lfs merge=lfs -text
 sub-CC00260XX05/ses-85300/anat/sub-CC00260XX05_ses-85300_desc-corr_space-T2w_thickness.dscalar.nii filter=lfs diff=lfs merge=lfs -text
+sub-CC00260XX05/ses-85300/anat/sub-CC00260XX05_ses-85300_space-T2w_curv.dscalar.nii filter=lfs diff=lfs merge=lfs -text
+sub-CC00260XX05/ses-85300/anat/sub-CC00260XX05_ses-85300_desc-smoothed_space-T2w_myelinmap.dscalar.nii filter=lfs diff=lfs merge=lfs -text

sub-CC00096XX15/ses-33700/anat/sub-CC00096XX15_ses-33700_hemi-L_desc-drawem_space-T2w_dparc.dlabel.gii

@@ -0,0 +1,72 @@
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+         <Value><![CDATA[CortexLeft]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
+Type: Command Line Application
+Version: 1.2.2
+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
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+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
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+         <Name><![CDATA[Name]]></Name>
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sub-CC00096XX15/ses-33700/anat/sub-CC00096XX15_ses-33700_hemi-L_desc-medialwall_mask.shape.gii

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+</DataArray>
+</GIFTI>

sub-CC00096XX15/ses-33700/anat/sub-CC00096XX15_ses-33700_hemi-R_desc-medialwall_mask.shape.gii

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+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
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+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexRight]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ParentProvenance]]></Name>
+         <Value><![CDATA[surfaces/CC00096XX15-33700/workbench/temp.CC00096XX15-33700.R.roi.native.shape.gii:
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+
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
+Type: Command Line Application
+Version: 1.2.2
+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
+         <Value><![CDATA[wb_command -metric-remove-islands surfaces/CC00096XX15-33700/workbench/CC00096XX15-33700.R.midthickness.native.surf.gii surfaces/CC00096XX15-33700/workbench/temp.CC00096XX15-33700.R.roi.native.shape.gii surfaces/CC00096XX15-33700/workbench/temp.CC00096XX15-33700.R.roi.native.shape.gii]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[WorkingDirectory]]></Name>
+         <Value><![CDATA[/data/results/workdir/CC00096XX15-33700]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="85071"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[CC00096XX15-33700_R_ROI]]></Value>
+      </MD>
+   </MetaData>
+   <Data>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</Data>
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sub-CC00096XX15/ses-33700/anat/wb.spec

@@ -0,0 +1,120 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<CaretSpecFile Version="1.0">
+   <MetaData>
+   </MetaData>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-L_space-T2w_wm.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-L_space-T2w_pial.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-L_space-T2w_midthickness.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-L_space-T2w_inflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-L_space-T2w_veryinflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-L_space-T2w_sphere.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-R_space-T2w_wm.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-R_space-T2w_pial.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-R_space-T2w_midthickness.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-R_space-T2w_inflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-R_space-T2w_veryinflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_hemi-R_space-T2w_sphere.surf.gii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_LABEL"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_desc-drawem_space-T2w_dparc.dlabel.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_space-T2w_sulc.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_space-T2w_thickness.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_space-T2w_curv.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_desc-corr_space-T2w_thickness.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_space-T2w_myelinmap.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_desc-smoothed_space-T2w_myelinmap.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_desc-restore_T2w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_desc-restore_space-T2w_T1w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_space-T2w_myelinmap.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00096XX15_ses-33700_space-T2w_desc-myelinmapribbon_dseg.nii.gz
+   </DataFile>
+</CaretSpecFile>

sub-CC00193XX13/ses-64400/anat/sub-CC00193XX13_ses-64400_hemi-L_desc-drawem_space-T2w_dparc.dlabel.gii

@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
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+       NumberOfDataArrays="1">
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+         <Value><![CDATA[CortexLeft]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
+Type: Command Line Application
+Version: 1.2.2
+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
+         <Value><![CDATA[wb_command -metric-label-import surfaces/CC00193XX13-64400/vtk/lh.labels.shape.gii /usr/src/structural-pipeline/build/MIRTK/Packages/DrawEM/parameters/segAllLut.txt surfaces/CC00193XX13-64400/workbench/temp.CC00193XX13-64400.L.drawem.native.label.gii -drop-unused-labels]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[WorkingDirectory]]></Name>
+         <Value><![CDATA[/data/results/workdir/CC00193XX13-64400]]></Value>
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+      <Label Key="5" Red="0.27451" Green="0.0784314" Blue="0.666667" Alpha="1"><![CDATA[L_Anterior_temporal_lobe_medial]]></Label>
+      <Label Key="7" Red="0.862745" Green="0.235294" Blue="0.862745" Alpha="1"><![CDATA[L_Anterior_temporal_lobe_lateral]]></Label>
+      <Label Key="9" Red="0.254902" Green="0.392157" Blue="0.0784314" Alpha="1"><![CDATA[L_Gyri_parahippocampalis_et_ambiens_anterior]]></Label>
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+      <Label Key="29" Red="0.627451" Green="0.392157" Blue="0.196078" Alpha="1"><![CDATA[L_Medial_and_inferior_temporal_gyri_posterior]]></Label>
+      <Label Key="31" Red="0.87451" Green="0.862745" Blue="0.235294" Alpha="1"><![CDATA[L_Superior_temporal_gyrus_posterior]]></Label>
+      <Label Key="33" Red="0.490196" Green="0.392157" Blue="0.627451" Alpha="1"><![CDATA[L_Cingulate_gyrus_anterior]]></Label>
+      <Label Key="35" Red="0.862745" Green="0.705882" Blue="0.862745" Alpha="1"><![CDATA[L_Cingulate_gyrus_posterior]]></Label>
+      <Label Key="37" Red="0.294118" Green="0.196078" Blue="0.490196" Alpha="1"><![CDATA[L_Frontal_lobe]]></Label>
+      <Label Key="39" Red="0.0784314" Green="0.705882" Blue="0.54902" Alpha="1"><![CDATA[L_Parietal_lobe]]></Label>
+   </LabelTable>
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+           ArrayIndexingOrder="RowMajorOrder"
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+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[CC00193XX13-64400_L_drawem]]></Value>
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sub-CC00193XX13/ses-64400/anat/sub-CC00193XX13_ses-64400_hemi-L_desc-medialwall_mask.shape.gii

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+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
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+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
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