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.gitattributes

@@ -596,3 +596,6 @@ sub-CC00672BN13/ses-214800/anat/sub-CC00672BN13_ses-214800_space-T2w_curv.dscala
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 sub-CC00672BN13/ses-214800/anat/sub-CC00672BN13_ses-214800_space-T2w_sulc.dscalar.nii filter=lfs diff=lfs merge=lfs -text
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+sub-CC00443XX15/ses-133900/anat/sub-CC00443XX15_ses-133900_space-T2w_sulc.dscalar.nii filter=lfs diff=lfs merge=lfs -text
+sub-CC00443XX15/ses-133900/anat/sub-CC00443XX15_ses-133900_desc-corr_space-T2w_thickness.dscalar.nii filter=lfs diff=lfs merge=lfs -text

sub-CC00079XX14/ses-30000/xfm/sub-CC00079XX14_ses-30000_from-template40wk_to-T2w_mode-image.nii.gz

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+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
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+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
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sub-CC00157XX09/ses-51900/anat/sub-CC00157XX09_ses-51900_hemi-L_desc-medialwall_mask.shape.gii

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+</DataArray>
+</GIFTI>

sub-CC00157XX09/ses-51900/anat/sub-CC00157XX09_ses-51900_hemi-R_desc-medialwall_mask.shape.gii

@@ -0,0 +1,63 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexRight]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ParentProvenance]]></Name>
+         <Value><![CDATA[surfaces/CC00157XX09-51900/workbench/temp.CC00157XX09-51900.R.roi.native.shape.gii:
+wb_command -metric-fill-holes surfaces/CC00157XX09-51900/workbench/CC00157XX09-51900.R.midthickness.native.surf.gii surfaces/CC00157XX09-51900/workbench/temp.CC00157XX09-51900.R.roi.native.shape.gii surfaces/CC00157XX09-51900/workbench/temp.CC00157XX09-51900.R.roi.native.shape.gii
+
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
+Type: Command Line Application
+Version: 1.2.2
+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
+         <Value><![CDATA[wb_command -metric-remove-islands surfaces/CC00157XX09-51900/workbench/CC00157XX09-51900.R.midthickness.native.surf.gii surfaces/CC00157XX09-51900/workbench/temp.CC00157XX09-51900.R.roi.native.shape.gii surfaces/CC00157XX09-51900/workbench/temp.CC00157XX09-51900.R.roi.native.shape.gii]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[WorkingDirectory]]></Name>
+         <Value><![CDATA[/data/results/workdir/CC00157XX09-51900]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="71401"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[CC00157XX09-51900_R_ROI]]></Value>
+      </MD>
+   </MetaData>
+   <Data>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</Data>
+</DataArray>
+</GIFTI>

sub-CC00157XX09/ses-51900/anat/wb.spec

@@ -0,0 +1,120 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<CaretSpecFile Version="1.0">
+   <MetaData>
+   </MetaData>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-L_space-T2w_wm.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-L_space-T2w_pial.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-L_space-T2w_midthickness.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-L_space-T2w_inflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-L_space-T2w_veryinflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-L_space-T2w_sphere.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-R_space-T2w_wm.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-R_space-T2w_pial.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-R_space-T2w_midthickness.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-R_space-T2w_inflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-R_space-T2w_veryinflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_hemi-R_space-T2w_sphere.surf.gii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_LABEL"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_desc-drawem_space-T2w_dparc.dlabel.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_space-T2w_sulc.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_space-T2w_thickness.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_space-T2w_curv.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_desc-corr_space-T2w_thickness.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_space-T2w_myelinmap.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_desc-smoothed_space-T2w_myelinmap.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_desc-restore_T2w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_desc-restore_space-T2w_T1w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_space-T2w_myelinmap.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00157XX09_ses-51900_space-T2w_desc-myelinmapribbon_dseg.nii.gz
+   </DataFile>
+</CaretSpecFile>

sub-CC00339XX18/ses-107200/anat/sub-CC00339XX18_ses-107200_hemi-R_desc-drawem_space-T2w_dparc.dlabel.gii

@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexRight]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
+Type: Command Line Application
+Version: 1.2.2
+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
+         <Value><![CDATA[wb_command -metric-label-import surfaces/CC00339XX18-107200/vtk/rh.labels.shape.gii /usr/src/structural-pipeline/build/MIRTK/Packages/DrawEM/parameters/segAllLut.txt surfaces/CC00339XX18-107200/workbench/temp.CC00339XX18-107200.R.drawem.native.label.gii -drop-unused-labels]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[WorkingDirectory]]></Name>
+         <Value><![CDATA[/data/results/workdir/CC00339XX18-107200]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+      <Label Key="6" Red="0.27451" Green="0.0784314" Blue="0.666667" Alpha="1"><![CDATA[R_Anterior_temporal_lobe_medial]]></Label>
+      <Label Key="8" Red="0.862745" Green="0.235294" Blue="0.862745" Alpha="1"><![CDATA[R_Anterior_temporal_lobe_lateral]]></Label>
+      <Label Key="10" Red="0.254902" Green="0.392157" Blue="0.0784314" Alpha="1"><![CDATA[R_Gyri_parahippocampalis_et_ambiens_anterior]]></Label>
+      <Label Key="12" Red="0.54902" Green="0.862745" Blue="0.862745" Alpha="1"><![CDATA[R_Superior_temporal_gyrus_middle]]></Label>
+      <Label Key="14" Red="0.862745" Green="0.862745" Blue="0.392157" Alpha="1"><![CDATA[R_Medial_and_inferior_temporal_gyri_anterior]]></Label>
+      <Label Key="16" Red="0.235294" Green="0.0784314" Blue="0.54902" Alpha="1"><![CDATA[R_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_anterior]]></Label>
+      <Label Key="20" Red="1" Green="0.752941" Blue="0.12549" Alpha="1"><![CDATA[R_Insula]]></Label>
+      <Label Key="22" Red="0.0784314" Green="0.117647" Blue="0.54902" Alpha="1"><![CDATA[R_Occipital_lobe]]></Label>
+      <Label Key="24" Red="0.921569" Green="0.137255" Blue="0.764706" Alpha="1"><![CDATA[R_Gyri_parahippocampalis_et_ambiens_posterior]]></Label>
+      <Label Key="26" Red="0.0196078" Green="0.137255" Blue="0.45098" Alpha="1"><![CDATA[R_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_posterior]]></Label>
+      <Label Key="28" Red="0.627451" Green="0.392157" Blue="0.196078" Alpha="1"><![CDATA[R_Medial_and_inferior_temporal_gyri_posterior]]></Label>
+      <Label Key="30" Red="0.87451" Green="0.862745" Blue="0.235294" Alpha="1"><![CDATA[R_Superior_temporal_gyrus_posterior]]></Label>
+      <Label Key="32" Red="0.490196" Green="0.392157" Blue="0.627451" Alpha="1"><![CDATA[R_Cingulate_gyrus_anterior]]></Label>
+      <Label Key="34" Red="0.862745" Green="0.705882" Blue="0.862745" Alpha="1"><![CDATA[R_Cingulate_gyrus_posterior]]></Label>
+      <Label Key="36" Red="0.294118" Green="0.196078" Blue="0.490196" Alpha="1"><![CDATA[R_Frontal_lobe]]></Label>
+      <Label Key="38" Red="0.0784314" Green="0.705882" Blue="0.54902" Alpha="1"><![CDATA[R_Parietal_lobe]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_LABEL"
+           DataType="NIFTI_TYPE_INT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="90837"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[CC00339XX18-107200_R_drawem]]></Value>
+      </MD>
+   </MetaData>
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sub-CC00339XX18/ses-107200/anat/sub-CC00339XX18_ses-107200_hemi-R_desc-medialwall_mask.shape.gii

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+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
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sub-CC00339XX18/ses-107200/anat/wb.spec

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