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@@ -632,3 +632,6 @@ sub-CC00363XX09/ses-114900/anat/sub-CC00363XX09_ses-114900_space-T2w_sulc.dscala
 sub-CC00607XX13/ses-179300/anat/sub-CC00607XX13_ses-179300_space-T2w_myelinmap.dscalar.nii filter=lfs diff=lfs merge=lfs -text
 sub-CC00607XX13/ses-179300/anat/sub-CC00607XX13_ses-179300_desc-smoothed_space-T2w_myelinmap.dscalar.nii filter=lfs diff=lfs merge=lfs -text
 sub-CC00607XX13/ses-179300/anat/sub-CC00607XX13_ses-179300_desc-drawem_space-T2w_dparc.dlabel.nii filter=lfs diff=lfs merge=lfs -text
+sub-CC00607XX13/ses-179300/anat/sub-CC00607XX13_ses-179300_space-T2w_thickness.dscalar.nii filter=lfs diff=lfs merge=lfs -text
+sub-CC00607XX13/ses-179300/anat/sub-CC00607XX13_ses-179300_space-T2w_curv.dscalar.nii filter=lfs diff=lfs merge=lfs -text
+sub-CC00607XX13/ses-179300/anat/sub-CC00607XX13_ses-179300_space-T2w_sulc.dscalar.nii filter=lfs diff=lfs merge=lfs -text

sub-CC00223XX09/ses-75900/anat/sub-CC00223XX09_ses-75900_hemi-L_desc-drawem_space-T2w_dparc.dlabel.gii

@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexLeft]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
+Type: Command Line Application
+Version: 1.2.2
+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
+         <Value><![CDATA[wb_command -metric-label-import surfaces/CC00223XX09-75900/vtk/lh.labels.shape.gii /usr/src/structural-pipeline/build/MIRTK/Packages/DrawEM/parameters/segAllLut.txt surfaces/CC00223XX09-75900/workbench/temp.CC00223XX09-75900.L.drawem.native.label.gii -drop-unused-labels]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[WorkingDirectory]]></Name>
+         <Value><![CDATA[/data/results/workdir/CC00223XX09-75900]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+      <Label Key="5" Red="0.27451" Green="0.0784314" Blue="0.666667" Alpha="1"><![CDATA[L_Anterior_temporal_lobe_medial]]></Label>
+      <Label Key="7" Red="0.862745" Green="0.235294" Blue="0.862745" Alpha="1"><![CDATA[L_Anterior_temporal_lobe_lateral]]></Label>
+      <Label Key="9" Red="0.254902" Green="0.392157" Blue="0.0784314" Alpha="1"><![CDATA[L_Gyri_parahippocampalis_et_ambiens_anterior]]></Label>
+      <Label Key="11" Red="0.54902" Green="0.862745" Blue="0.862745" Alpha="1"><![CDATA[L_Superior_temporal_gyrus_middle]]></Label>
+      <Label Key="13" Red="0.862745" Green="0.862745" Blue="0.392157" Alpha="1"><![CDATA[L_Medial_and_inferior_temporal_gyri_anterior]]></Label>
+      <Label Key="15" Red="0.235294" Green="0.0784314" Blue="0.54902" Alpha="1"><![CDATA[L_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_anterior]]></Label>
+      <Label Key="21" Red="1" Green="0.752941" Blue="0.12549" Alpha="1"><![CDATA[L_Insula]]></Label>
+      <Label Key="23" Red="0.0784314" Green="0.117647" Blue="0.54902" Alpha="1"><![CDATA[L_Occipital_lobe]]></Label>
+      <Label Key="25" Red="0.921569" Green="0.137255" Blue="0.764706" Alpha="1"><![CDATA[L_Gyri_parahippocampalis_et_ambiens_posterior]]></Label>
+      <Label Key="27" Red="0.0196078" Green="0.137255" Blue="0.45098" Alpha="1"><![CDATA[L_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_posterior]]></Label>
+      <Label Key="29" Red="0.627451" Green="0.392157" Blue="0.196078" Alpha="1"><![CDATA[L_Medial_and_inferior_temporal_gyri_posterior]]></Label>
+      <Label Key="31" Red="0.87451" Green="0.862745" Blue="0.235294" Alpha="1"><![CDATA[L_Superior_temporal_gyrus_posterior]]></Label>
+      <Label Key="33" Red="0.490196" Green="0.392157" Blue="0.627451" Alpha="1"><![CDATA[L_Cingulate_gyrus_anterior]]></Label>
+      <Label Key="35" Red="0.862745" Green="0.705882" Blue="0.862745" Alpha="1"><![CDATA[L_Cingulate_gyrus_posterior]]></Label>
+      <Label Key="37" Red="0.294118" Green="0.196078" Blue="0.490196" Alpha="1"><![CDATA[L_Frontal_lobe]]></Label>
+      <Label Key="39" Red="0.0784314" Green="0.705882" Blue="0.54902" Alpha="1"><![CDATA[L_Parietal_lobe]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_LABEL"
+           DataType="NIFTI_TYPE_INT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="83383"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[CC00223XX09-75900_L_drawem]]></Value>
+      </MD>
+   </MetaData>
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+</GIFTI>

sub-CC00223XX09/ses-75900/anat/sub-CC00223XX09_ses-75900_hemi-L_desc-medialwall_mask.shape.gii

@@ -0,0 +1,63 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexLeft]]></Value>
+      </MD>
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+</DataArray>
+</GIFTI>

sub-CC00223XX09/ses-75900/anat/sub-CC00223XX09_ses-75900_hemi-R_desc-medialwall_mask.shape.gii

@@ -0,0 +1,63 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<GIFTI xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+       xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd"
+       Version="1"
+       NumberOfDataArrays="1">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[AnatomicalStructurePrimary]]></Name>
+         <Value><![CDATA[CortexRight]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ParentProvenance]]></Name>
+         <Value><![CDATA[surfaces/CC00223XX09-75900/workbench/temp.CC00223XX09-75900.R.roi.native.shape.gii:
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+
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[ProgramProvenance]]></Name>
+         <Value><![CDATA[Connectome Workbench
+Type: Command Line Application
+Version: 1.2.2
+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
+         <Value><![CDATA[wb_command -metric-remove-islands surfaces/CC00223XX09-75900/workbench/CC00223XX09-75900.R.midthickness.native.surf.gii surfaces/CC00223XX09-75900/workbench/temp.CC00223XX09-75900.R.roi.native.shape.gii surfaces/CC00223XX09-75900/workbench/temp.CC00223XX09-75900.R.roi.native.shape.gii]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[WorkingDirectory]]></Name>
+         <Value><![CDATA[/data/results/workdir/CC00223XX09-75900]]></Value>
+      </MD>
+   </MetaData>
+   <LabelTable>
+      <Label Key="0" Red="1" Green="1" Blue="1" Alpha="0"><![CDATA[???]]></Label>
+   </LabelTable>
+<DataArray Intent="NIFTI_INTENT_NORMAL"
+           DataType="NIFTI_TYPE_FLOAT32"
+           ArrayIndexingOrder="RowMajorOrder"
+           Dimensionality="1"
+           Dim0="83689"
+           Encoding="GZipBase64Binary"
+           Endian="LittleEndian"
+           ExternalFileName=""
+           ExternalFileOffset="0">
+   <MetaData>
+      <MD>
+         <Name><![CDATA[Name]]></Name>
+         <Value><![CDATA[CC00223XX09-75900_R_ROI]]></Value>
+      </MD>
+   </MetaData>
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+</GIFTI>

sub-CC00223XX09/ses-75900/anat/wb.spec

@@ -0,0 +1,120 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<CaretSpecFile Version="1.0">
+   <MetaData>
+   </MetaData>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-L_space-T2w_wm.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-L_space-T2w_pial.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-L_space-T2w_midthickness.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-L_space-T2w_inflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-L_space-T2w_veryinflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexLeft"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-L_space-T2w_sphere.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-R_space-T2w_wm.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-R_space-T2w_pial.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-R_space-T2w_midthickness.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-R_space-T2w_inflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-R_space-T2w_veryinflated.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_hemi-R_space-T2w_sphere.surf.gii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_LABEL"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_desc-drawem_space-T2w_dparc.dlabel.nii
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+   <DataFile Structure="Invalid"
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+             Selected="true">
+      sub-CC00223XX09_ses-75900_space-T2w_sulc.dscalar.nii
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+   <DataFile Structure="Invalid"
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+   </DataFile>
+   <DataFile Structure="Invalid"
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+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_desc-corr_space-T2w_thickness.dscalar.nii
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
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+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
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+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_desc-restore_T2w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_desc-restore_space-T2w_T1w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_space-T2w_myelinmap.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00223XX09_ses-75900_space-T2w_desc-myelinmapribbon_dseg.nii.gz
+   </DataFile>
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sub-CC00326XX13/ses-104100/anat/sub-CC00326XX13_ses-104100_hemi-L_desc-drawem_space-T2w_dparc.dlabel.gii

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+Compiled Debug: YES
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+      <Label Key="39" Red="0.0784314" Green="0.705882" Blue="0.54902" Alpha="1"><![CDATA[L_Parietal_lobe]]></Label>
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sub-CC00326XX13/ses-104100/anat/sub-CC00326XX13_ses-104100_hemi-R_desc-drawem_space-T2w_dparc.dlabel.gii

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+Commit Date: 2016-07-18 18:00:41 -0500
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+      sub-CC00326XX13_ses-104100_hemi-L_space-T2w_sphere.surf.gii
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+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00326XX13_ses-104100_hemi-R_space-T2w_wm.surf.gii
+   </DataFile>
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+             DataFileType="SURFACE"
+             Selected="true">
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+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
+      sub-CC00326XX13_ses-104100_hemi-R_space-T2w_midthickness.surf.gii
+   </DataFile>
+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
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+   <DataFile Structure="CortexRight"
+             DataFileType="SURFACE"
+             Selected="true">
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+             Selected="true">
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+   </DataFile>
+   <DataFile Structure="Invalid"
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+             Selected="true">
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+   <DataFile Structure="Invalid"
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+      sub-CC00326XX13_ses-104100_desc-corr_space-T2w_thickness.dscalar.nii
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+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
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+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="CONNECTIVITY_DENSE_SCALAR"
+             Selected="true">
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+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00326XX13_ses-104100_desc-restore_T2w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00326XX13_ses-104100_desc-restore_space-T2w_T1w.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00326XX13_ses-104100_space-T2w_myelinmap.nii.gz
+   </DataFile>
+   <DataFile Structure="Invalid"
+             DataFileType="VOLUME"
+             Selected="true">
+      sub-CC00326XX13_ses-104100_space-T2w_desc-myelinmapribbon_dseg.nii.gz
+   </DataFile>
+</CaretSpecFile>

sub-CC00347XX18/ses-109600/anat/sub-CC00347XX18_ses-109600_hemi-L_desc-drawem_space-T2w_dparc.dlabel.gii

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+Qt Compiled Version: 4.8.7
+Qt Runtime Version: 4.8.7
+Commit: 3fd5e0762d909574c28dc8d317c9fa8c41299a62
+Commit Date: 2016-07-18 18:00:41 -0500
+Compiled with OpenMP: YES
+Compiler: g++-5 (/usr/bin)
+Compiler Version: 5.4.0
+Compiled Debug: YES
+Operating System: Linux
+]]></Value>
+      </MD>
+      <MD>
+         <Name><![CDATA[Provenance]]></Name>
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+      <Label Key="39" Red="0.0784314" Green="0.705882" Blue="0.54902" Alpha="1"><![CDATA[L_Parietal_lobe]]></Label>
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sub-CC00347XX18/ses-109600/anat/sub-CC00347XX18_ses-109600_hemi-L_desc-medialwall_mask.shape.gii

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