Upload dataset (part 00001-of-00002)
Browse files
README.md
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size_categories:
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- 100k<n<1M
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pretty_name: 'Microbiome Immunity Project: Protein Universe'
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tags:
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- chemistry
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- biology
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@@ -46,17 +55,15 @@ citation_apa: Koehler Leman, J., Szczerbiak, P., Renfrew, P. D., Gligorijevic, V
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Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
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relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
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doi:10.1038/s41467-023-37896-w
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config_names:
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- rosetta_high_quality_models
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- rosetta_low_quality_models
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- dmpfold_high_quality_models
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- dmpfold_low_quality_models
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- rosetta_high_quality_function_predictions
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- rosetta_low_quality_function_predictions
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- dmpfold_high_quality_function_predictions
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- dmpfold_low_quality_function_predictions
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configs:
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- config_name: rosetta_high_quality_models
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data_files:
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- split: train
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data_files:
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- split: train
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path: rosetta_low_quality_models/data/train-*
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- config_name: dmpfold_high_quality_models
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- config_name: dmpfold_low_quality_models
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- config_name: rosetta_high_quality_models
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features:
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- name: id
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@@ -101,7 +132,13 @@ dataset_info:
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dtype: float64
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splits:
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- name: train
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- config_name: rosetta_low_quality_models
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features:
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- name: id
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dtype: float64
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splits:
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- name: train
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- config_name: dmpfold_high_quality_models
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features:
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- name: id
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dtype: string
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- name: pdb
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dtype: large_string
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splits:
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- name: train
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- config_name: dmpfold_low_quality_models
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features:
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- name: id
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dtype: string
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- name: pdb
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dtype: large_string
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splits:
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- name: train
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- config_name: rosetta_high_quality_function_predictions
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splits:
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- name: train
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- config_name: rosetta_low_quality_function_predictions
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splits:
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- name: train
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- config_name: dmpfold_high_quality_function_predictions
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splits:
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- name: train
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- config_name: dmpfold_low_quality_function_predictions
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splits:
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- name: train
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- config_name: DeepFRI_labels
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features:
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- name: label_id
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dtype: string
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- name: label_description
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dtype: string
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splits:
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- name: train
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---
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# Microbiome Immunity Project: Protein Universe
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~200,000 predicted structures for diverse protein sequences from 1,003
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size_categories:
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- 100k<n<1M
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pretty_name: 'Microbiome Immunity Project: Protein Universe'
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+
config_names:
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- rosetta_high_quality_models
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+
- rosetta_low_quality_models
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- dmpfold_high_quality_models
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- dmpfold_low_quality_models
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- rosetta_high_quality_function_predictions
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- rosetta_low_quality_function_predictions
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- dmpfold_high_quality_function_predictions
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- dmpfold_low_quality_function_predictions
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tags:
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- chemistry
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- biology
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Fisk, I., Xavier, R. J., Knight, R., Bonneau, R., Kosciolek, T. (2023). Sequence-structure-function
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relationships in the microbial protein universe. Nature Communications, 14(1), 2351.
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doi:10.1038/s41467-023-37896-w
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configs:
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- config_name: dmpfold_high_quality_models
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data_files:
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- split: train
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path: dmpfold_high_quality_models/data/train-*
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- config_name: dmpfold_low_quality_models
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data_files:
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- split: train
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path: dmpfold_low_quality_models/data/train-*
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- config_name: rosetta_high_quality_models
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data_files:
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- split: train
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data_files:
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- split: train
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path: rosetta_low_quality_models/data/train-*
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dataset_info:
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- config_name: DeepFRI_labels
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features:
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- name: label_id
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dtype: string
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- name: label_description
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dtype: string
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splits:
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- name: train
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- config_name: dmpfold_high_quality_function_predictions
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splits:
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- name: train
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- config_name: dmpfold_high_quality_models
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features:
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- name: id
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dtype: string
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- name: pdb
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dtype: large_string
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splits:
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- name: train
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- config_name: dmpfold_low_quality_function_predictions
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splits:
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- name: train
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- config_name: dmpfold_low_quality_models
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features:
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- name: id
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dtype: string
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- name: pdb
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dtype: large_string
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splits:
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- name: train
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- config_name: rosetta_high_quality_function_predictions
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splits:
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- name: train
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- config_name: rosetta_high_quality_models
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features:
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- name: id
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dtype: float64
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splits:
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- name: train
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num_bytes: 26605961354
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num_examples: 211069
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download_size: 9111917881
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dataset_size: 26605961354
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- config_name: rosetta_low_quality_function_predictions
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splits:
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- name: train
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- config_name: rosetta_low_quality_models
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features:
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- name: id
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dtype: float64
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splits:
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- name: train
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---
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# Microbiome Immunity Project: Protein Universe
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~200,000 predicted structures for diverse protein sequences from 1,003
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rosetta_high_quality_models/data/train-00050-of-00054.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:3e1eeb040e61ba2773c04d7836162eb00807a4c7852e803eaecfb9866d54623c
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size 195672597
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rosetta_high_quality_models/data/train-00051-of-00054.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:dfeca07f6d6ddab53daeb82086c3f966fd2b8f0f2d45beabe9986f6e490e5956
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size 198771600
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rosetta_high_quality_models/data/train-00052-of-00054.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:16e396fa553819d7713f2c4ccdba8b8be3cfe2bff89bed7733b9412e0f5a8939
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size 200111648
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rosetta_high_quality_models/data/train-00053-of-00054.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:d605eb6860b91e517b7fc766e60cbcdb0d61aa13ef60e8af1c5c0bf0fd7e3d1f
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size 194776588
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