#' Diagnostics for messy joins #' #' given a data frame with two ways to group rows, #' summarize and give examples of situations where the mapping is not 1-1 #' #' @param x_cols tidyselect specification of a set of columns defining objects #' @param y_cols tidyselect specification of a set of columns defining objects #' #' data <- data.frame( #' x=c(1,2,NA,3,4,5,6,6,6,7,7), #' y=c("a",NA,"c","d","d","d","e","f","g","h","h")) #' #' data |> summarize_map( #' x_cols = x), #' y_cols = y)) #' X<-[x]: #' |X|: 7 # number of groups #' |is.na.X|: 1 # number of groups with NA in atleaset 1 col #' range(|x|:X): 1, 3 # size range of groups #' Y<-[y]: #' |Y|: 7 #' |is.na.Y|: 1 #' range(|y|:Y): 1, 3 #' [X U Y]: # grouping by the union of xcols and ycols #' |X U Y|: 8 #' |is.na.XUY|: 2 #' range(|z|:X U Y): 1, 2 #' [X @ Y]: #' |X ~ Y|: 5 #' |X:X < Y|, |Y:Y < X|: 1, 1 #' |X:X > Y|, |Y:Y < X|: 3, 3 #' $is.na.X #' x y #' 1 NA c #' #' $is.na.Y #' x y #' 1 2 #' #' $dup.XUY #' x y #' 1 7 h #' 2 7 h #' #' $dup.X #' x y #' 1 6 e #' 2 6 f #' 3 6 g #' #' $dup.Y #' y x #' 1 d 3 #' 2 d 4 #' 3 d 5 #' @export summarize_map <- function( data, x_cols, y_cols, n_examples = 4, verbose = FALSE) { # convert column selections named vectors of column indices into data x_cols <- tidyselect::eval_select(rlang::enquo(x_cols), data) y_cols <- tidyselect::eval_select(rlang::enquo(y_cols), data) xUy_cols <- union(x_cols, y_cols) names(xUy_cols) <- names(data[xUy_cols]) if(verbose) { cat("The following is a report of the relationship between two different ways of identifying instances\n") } # example rows problems <- list() count_xUy <- data |> dplyr::count(dplyr::across(tidyselect::all_of(xUy_cols))) |> dplyr::ungroup() count_x <- count_xUy |> dplyr::count(dplyr::across(tidyselect::all_of(names(x_cols))), name = "size") |> dplyr::ungroup() count_y <- count_xUy |> dplyr::count(dplyr::across(tidyselect::all_of(names(y_cols))), name = "size") |> dplyr::ungroup() if (verbose) { cat("\nProperties of X identifiers:\n") } cat("X<-[", paste(names(x_cols), collapse = ", "), "]:\n", sep = "") cat(" |X|: ", count_x |> stats::na.omit(method = "r") |> nrow(), sep = "") na_count <- data |> dplyr::select(tidyselect::all_of(x_cols)) |> stats::complete.cases() |> magrittr::not() |> sum() cat( ifelse( na_count == 0, "", paste0(" (", na_count, " NA)")), "\n", sep = "") size_dist <- count_x |> stats::na.omit(method = "r") |> dplyr::count(size) |> dplyr::ungroup() if (nrow(size_dist) < 12) { cat(" count*size: ", paste(size_dist$n, size_dist$size, sep = "*", collapse = ", "), "\n", sep = "") } else { top <- 1:6 bottom <- (nrow(size_dist) - 6+1):nrow(size_dist) cat(" count*size: ", paste( size_dist$n[top], size_dist$size[top], sep = "*", collapse = ", "), ", ... ", paste( size_dist$n[bottom], size_dist$size[bottom], sep = "*", collapse = ", "), "\n", sep="") } if (verbose) { cat("\nProperties of the Y identifiers:\n") } cat("Y<-[", paste(names(y_cols), collapse = ", "), "]:\n", sep = "") cat(" |Y|: ", count_y |> stats::na.omit(method = "r") |> nrow(), sep = "") na_count <- data |> dplyr:::select(tidyselect::all_of(y_cols)) |> stats::complete.cases() |> magrittr::not() |> sum() cat(ifelse(na_count == 0, "", paste0(" (", na_count, " NA)")), "\n", sep = "") size_dist <- count_y |> stats::na.omit(method = "r") |> dplyr::count(size) |> dplyr::ungroup() if (nrow(size_dist) < 12) { cat(" count*size: ", paste(size_dist$n, size_dist$size, sep = "*", collapse = ", "), "\n", sep = "") } else { top <- 1:6 bottom <- (nrow(size_dist) - 6+1):nrow(size_dist) cat(" count*size: ", paste( size_dist$n[top], size_dist$size[top], sep = "*", collapse = ", "), ", ... ", paste( size_dist$n[bottom], size_dist$size[bottom], sep = "*", collapse = ", "), "\n", sep="") } if (verbose) { cat("\nProperties of the intersection of union of the X and Y identifiers:\n") } cat("[X U Y]:\n") cat(" |X U Y|: ", count_xUy |> stats::na.omit(method = "r") |> nrow(), sep = "") na_count <- data |> dplyr:::select(!!!xUy_cols) |> stats::complete.cases() |> magrittr::not() |> sum() cat(ifelse(na_count == 0, "", paste0(" (", na_count, " NA)")), "\n", sep = "") size_dist <- count_xUy |> stats::na.omit(method = "r") |> dplyr::rename(size = n) |> dplyr::count(size) |> dplyr::ungroup() if (nrow(size_dist) < 12) { cat(" count*size: ", paste(size_dist$n, size_dist$size, sep = "*", collapse = ", "), "\n", sep="") } else { top <- 1:6 bottom <- (nrow(size_dist) - 6+1):nrow(size_dist) cat(" count*size: ", paste( size_dist$n[top], size_dist$size[top], sep = "*", collapse = ", "), ", ... ", paste( size_dist$n[bottom], size_dist$size[bottom], sep = "*", collapse = ", "), "\n", sep = "") } count_xUy <- count_xUy |> stats::na.omit(method = "r") if (verbose) { cat("Properties of the intersection of the X and Y identifiers:\n") } cat("[X @ Y]:\n") if (verbose) { cat(" Number of X and Y identifiers that are 1 to 1:\n") } cat(" |X ~ Y|: ", count_xUy |> dplyr::semi_join( count_x |> dplyr::filter(size == 1), by = names(x_cols)) |> dplyr::semi_join( count_y |> dplyr::filter(size == 1), by = names(y_cols)) |> nrow(), "\n", sep = "") if (verbose) { cat(" Number of X and Y identifiers where an X identifier maps to multiple Y identifiers:\n") } cat( " |X:X < Y|, |Y:Y < X|: ", count_xUy |> dplyr::semi_join( count_x |> dplyr::filter(size > 1), by = names(x_cols)) |> nrow(), ", ", count_xUy |> dplyr::count( dplyr::across(tidyselect::all_of(names(x_cols))), name = "size") |> dplyr::filter(size > 1) |> nrow(), "\n", sep = "") if (verbose) { cat( " Number of X and Y identifiers where a Y identifier maps to ", "multiple X identifiers:\n") } cat( " |X:X > Y|, |Y:Y > X|: ", count_xUy |> dplyr::semi_join( count_y |> dplyr::filter(size > 1), by = names(y_cols)) |> nrow(), ", ", count_xUy |> dplyr::count( dplyr::across(tidyselect::all_of(names(y_cols))), name = "size") |> dplyr::filter(size > 1) |> nrow(), "\n", sep = "") #is.na.X ex_rows <- data |> dplyr:::select(tidyselect::all_of(x_cols)) |> stats::complete.cases() |> magrittr::not() |> which() if (length(ex_rows)) { if (!is.null(n_examples) && (n_examples < length(ex_rows))) { ex_rows <- ex_rows |> sample(n_examples, replace = FALSE) } problems$is.na.X <- data |> dplyr::slice(ex_rows) |> dplyr::arrange(dplyr::across(tidyselect::all_of(names(x_cols)))) } #is.na.Y ex_rows <- data |> dplyr:::select(tidyselect::all_of(y_cols)) |> stats::complete.cases() |> magrittr::not() |> which() if (length(ex_rows)) { if (!is.null(n_examples) && (n_examples < length(ex_rows))) { ex_rows <- ex_rows |> sample(n_examples, replace = FALSE) } problems$is.na.Y <- data |> dplyr::slice(ex_rows) |> dplyr::arrange(dplyr::across(tidyselect::all_of(names(y_cols)))) } #dup.X dup.X <- count_xUy |> dplyr::filter(n == 1) |> dplyr::count( dplyr::across(tidyselect::all_of(names(x_cols))), name = "size") |> dplyr::filter(size > 1) |> dplyr::ungroup() |> dplyr:::select(-size) if (nrow(dup.X) > 1) { if (!is.null(n_examples) && (n_examples < nrow(dup.X))) { dup.X <- dup.X |> dplyr::sample_n(n_examples, replace = FALSE) } problems$dup.X <- dup.X |> dplyr::left_join(data, by = names(x_cols)) |> dplyr::arrange(dplyr::across(tidyselect::all_of(names(x_cols)))) } #dup.Y dup.Y <- count_xUy |> dplyr::filter(n == 1) |> dplyr::count( dplyr::across(tidyselect::all_of(names(y_cols))), name = "size") |> dplyr::filter(size > 1) |> dplyr::ungroup() |> dplyr:::select(-size) if (nrow(dup.Y) > 1) { if (!is.null(n_examples) && (n_examples < nrow(dup.Y))) { dup.Y <- dup.Y |> dplyr::sample_n(n_examples, replace = FALSE) } problems$dup.Y <- dup.Y |> dplyr::left_join(data, by = names(ycols)) |> dplyr::arrange(dplyr::across(tidyselect::all_of(names(y_cols)))) } #dup.XUY dup.XUY <- count_xUy |> dplyr::filter(n > 1) |> dplyr:::select(-n) if (nrow(dup.XUY) > 1) { if (!is.null(n_examples) && (n_examples < nrow(dup.XUY))) { dup.XUY <- dup.XUY |> dplyr::sample_n(n_examples, replace = FALSE) } problems$dup.XUY <- dup.XUY |> dplyr::left_join(data, by = names(xUy_cols)) |> dplyr::arrange(dplyr::across(tidyselect::all_of(names(xUy_cols)))) } if (verbose) { cat("Returned instances where:\n") cat("\tis.na.X: The X identifier is NA\n") cat("\tis.na.Y: The Y identifier is NA\n") cat("\tdup.X: The X identifier is not unique\n") cat("\tdup.Y: The Y identifier is not unique\n") cat("\tdup.XUY: The X and Y identifiers together are not unique\n") } problems }