|
Residue conformations |
|
A4 : G C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : U C2p_endo anti |
|
A11 : G C2p_endo anti |
|
A12 : U C2p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C2p_endo syn |
|
A18 : A C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C2p_endo anti |
|
A21 : A C2p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : C C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : C C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C2p_exo anti |
|
A29 : G C3p_endo anti |
|
A30 : C C3p_endo anti |
|
A31 : C C2p_exo anti |
|
B65 : SER |
|
B66 : GLY |
|
B67 : PRO |
|
B68 : ARG |
|
B69 : PRO |
|
B70 : ARG |
|
B71 : GLY |
|
B72 : THR |
|
B73 : ARG |
|
B74 : GLY |
|
B75 : LYS |
|
B76 : GLY |
|
B77 : ARG |
|
B78 : ARG |
|
B79 : ILE |
|
B80 : ARG |
|
B81 : ARG |
|
Adjacent stackings |
|
A5-A6 : adjacent_5p upward |
|
A10-A11 : adjacent_5p downward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A31 : outward |
|
A9-A27 : outward |
|
A11-A13 : upward |
|
Number of stackings = 17 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A4-A31 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A30 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B77 : G-ARG pairing one_hbond |
|
A10-A13 : U-A Ww/Hh pairing parallel cis XXIII |
|
A11-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B73 : G-ARG pairing one_hbond |
|
A13-A24 : A-U Ww/Ww pairing antiparallel cis XX |
|
A14-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-B70 : G-ARG pairing |
|
A15-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A4 : G C2p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : U C2p_endo anti |
|
A11 : G C2p_endo anti |
|
A12 : U C2p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C3p_exo anti |
|
A18 : A C1p_exo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C2p_endo anti |
|
A21 : A C2p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : C C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : C C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C4p_exo anti |
|
A30 : C C3p_endo anti |
|
A31 : C C3p_endo anti |
|
B65 : SER |
|
B66 : GLY |
|
B67 : PRO |
|
B68 : ARG |
|
B69 : PRO |
|
B70 : ARG |
|
B71 : GLY |
|
B72 : THR |
|
B73 : ARG |
|
B74 : GLY |
|
B75 : LYS |
|
B76 : GLY |
|
B77 : ARG |
|
B78 : ARG |
|
B79 : ILE |
|
B80 : ARG |
|
B81 : ARG |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p downward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A8-A28 : outward |
|
A9-A27 : outward |
|
A14-A24 : outward |
|
Number of stackings = 19 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 3 |
|
Base-pairs |
|
A4-A31 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A30 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A27 : C-G Ww/Ww pairing antiparallel cis |
|
A9-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-A26 : U-C Ww/O2' pairing |
|
A13-A24 : A-U Ww/Ww pairing antiparallel cis XX |
|
A14-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-B70 : G-ARG pairing one_hbond |
|
A15-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A18 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A4 : G C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : G C4p_exo anti |
|
A10 : U C2p_endo anti |
|
A11 : G C2p_endo anti |
|
A12 : U C2p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C2p_endo anti |
|
A18 : A C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C2p_endo anti |
|
A21 : A C2p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : C C3p_endo anti |
|
A24 : U C3p_endo anti |
|
A25 : C C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C4p_exo anti |
|
A29 : G C3p_endo anti |
|
A30 : C C3p_endo anti |
|
A31 : C C2p_exo anti |
|
B65 : SER |
|
B66 : GLY |
|
B67 : PRO |
|
B68 : ARG |
|
B69 : PRO |
|
B70 : ARG |
|
B71 : GLY |
|
B72 : THR |
|
B73 : ARG |
|
B74 : GLY |
|
B75 : LYS |
|
B76 : GLY |
|
B77 : ARG |
|
B78 : ARG |
|
B79 : ILE |
|
B80 : ARG |
|
B81 : ARG |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p downward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A9-A27 : outward |
|
A11-A13 : upward |
|
Number of stackings = 18 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A31 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A30 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B77 : G-ARG pairing one_hbond |
|
A10-A13 : U-A Ww/Hh pairing parallel cis XXIII |
|
A11-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B73 : G-ARG pairing one_hbond |
|
A13-A24 : A-U Ww/Ww pairing antiparallel cis XX |
|
A14-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-B70 : G-ARG pairing one_hbond |
|
A15-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A18 : C-A O2'/Hh adjacent_5p pairing |
|
Residue conformations |
|
A4 : G C3p_endo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : U C2p_endo anti |
|
A11 : G C2p_endo anti |
|
A12 : U C2p_endo anti |
|
A13 : A C3p_endo anti |
|
A14 : G C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C2p_endo anti |
|
A18 : A C1p_exo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C2p_endo anti |
|
A21 : A C2p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : C C4p_exo anti |
|
A24 : U C3p_endo anti |
|
A25 : C C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C2p_exo anti |
|
A29 : G C3p_endo anti |
|
A30 : C C3p_endo anti |
|
A31 : C C3p_endo anti |
|
B65 : SER |
|
B66 : GLY |
|
B67 : PRO |
|
B68 : ARG |
|
B69 : PRO |
|
B70 : ARG |
|
B71 : GLY |
|
B72 : THR |
|
B73 : ARG |
|
B74 : GLY |
|
B75 : LYS |
|
B76 : GLY |
|
B77 : ARG |
|
B78 : ARG |
|
B79 : ILE |
|
B80 : ARG |
|
B81 : ARG |
|
Adjacent stackings |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p downward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A23-A24 : adjacent_5p upward |
|
A25-A26 : adjacent_5p upward |
|
A26-A27 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A31 : outward |
|
A8-A28 : outward |
|
A9-A27 : outward |
|
A11-A13 : upward |
|
A13-A25 : outward |
|
Number of stackings = 21 |
|
Number of adjacent stackings = 16 |
|
Number of non adjacent stackings = 5 |
|
Base-pairs |
|
A4-A31 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A30 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A10-A13 : U-A Ww/Hh pairing parallel cis XXIII |
|
A11-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A11-B73 : G-ARG pairing one_hbond |
|
A13-A24 : A-U Ww/Ww pairing antiparallel cis XX |
|
A14-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-B70 : G-ARG pairing one_hbond |
|
A15-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : U-A Ww/Ww pairing antiparallel cis XX |
|
Residue conformations |
|
A4 : G C1p_exo anti |
|
A5 : G C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : U C3p_endo anti |
|
A8 : C C3p_endo anti |
|
A9 : G C3p_endo anti |
|
A10 : U C1p_exo anti |
|
A11 : G C2p_endo anti |
|
A12 : U C2p_endo anti |
|
A13 : A C4p_exo anti |
|
A14 : G C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : U C3p_endo anti |
|
A17 : C C2p_endo anti |
|
A18 : A C2p_endo anti |
|
A19 : U C4p_exo anti |
|
A20 : U C2p_endo anti |
|
A21 : A C2p_endo anti |
|
A22 : G C3p_endo anti |
|
A23 : C C4p_exo anti |
|
A24 : U C3p_endo anti |
|
A25 : C C3p_endo anti |
|
A26 : C C3p_endo anti |
|
A27 : G C3p_endo anti |
|
A28 : A C3p_endo anti |
|
A29 : G C3p_endo anti |
|
A30 : C C3p_endo anti |
|
A31 : C C3p_endo anti |
|
B65 : SER |
|
B66 : GLY |
|
B67 : PRO |
|
B68 : ARG |
|
B69 : PRO |
|
B70 : ARG |
|
B71 : GLY |
|
B72 : THR |
|
B73 : ARG |
|
B74 : GLY |
|
B75 : LYS |
|
B76 : GLY |
|
B77 : ARG |
|
B78 : ARG |
|
B79 : ILE |
|
B80 : ARG |
|
B81 : ARG |
|
Adjacent stackings |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A10-A11 : adjacent_5p downward |
|
A13-A14 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A21-A22 : adjacent_5p upward |
|
A22-A23 : adjacent_5p upward |
|
A24-A25 : adjacent_5p upward |
|
A27-A28 : adjacent_5p upward |
|
A28-A29 : adjacent_5p upward |
|
A29-A30 : adjacent_5p upward |
|
A30-A31 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A9-A27 : outward |
|
A13-A25 : outward |
|
Number of stackings = 16 |
|
Number of adjacent stackings = 14 |
|
Number of non adjacent stackings = 2 |
|
Base-pairs |
|
A4-A5 : G-G O2'/Hh adjacent_5p pairing |
|
A4-A31 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A5-A30 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A6-A29 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A28 : U-A Ww/Ww pairing antiparallel cis XX |
|
A8-A27 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A9-A26 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B77 : G-ARG pairing one_hbond |
|
A10-A13 : U-A Ww/Hh pairing parallel cis XXIII |
|
A11-A25 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-A24 : A-U Ww/Ww pairing antiparallel cis XX |
|
A14-A23 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A14-B70 : G-ARG pairing |
|
A15-A22 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A16-A21 : U-A Ww/Ww pairing antiparallel cis XX |
|
A17-A18 : C-A O2'/Hh adjacent_5p pairing |
|
|
