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schlevik commited on
Commit
9192d01
1 Parent(s): 6dad2a1

change the bigbio text format to correct text

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Files changed (1) hide show
  1. psytar.py +4 -3
psytar.py CHANGED
@@ -41,6 +41,7 @@ This dataset can be used for:
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  In the source schema, systematic annotation with UMLS and SNOMED-CT concepts are provided.
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  """
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  import re
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  from dataclasses import dataclass
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  from pathlib import Path
@@ -486,14 +487,14 @@ class PsyTARDataset(datasets.GeneratorBasedBuilder):
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  example = {
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  "id": idx,
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  "document_id": f"{row['drug_id']}_{row['sentence_index']}",
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- "text": row["label"],
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- "labels": row["category"],
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  }
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  yield example
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  def _generate_examples(self, filepath) -> Tuple[int, Dict]:
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  """Yields examples as (key, example) tuples."""
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-
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  if self.config.schema == "source":
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  examples = self._convert_xlsx_to_source(filepath)
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  In the source schema, systematic annotation with UMLS and SNOMED-CT concepts are provided.
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  """
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+ import os
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  import re
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  from dataclasses import dataclass
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  from pathlib import Path
 
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  example = {
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  "id": idx,
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  "document_id": f"{row['drug_id']}_{row['sentence_index']}",
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+ "text": row.sentences,
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+ "labels": row["label"],
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  }
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  yield example
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  def _generate_examples(self, filepath) -> Tuple[int, Dict]:
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  """Yields examples as (key, example) tuples."""
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+ filepath = os.path.join(filepath, "PsyTAR_dataset.xlsx")
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  if self.config.schema == "source":
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  examples = self._convert_xlsx_to_source(filepath)
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