gabrielaltay
commited on
Commit
•
c2d7dc4
1
Parent(s):
5c08365
fix parsing imports
Browse files- cellfinder.py +6 -3
cellfinder.py
CHANGED
@@ -31,6 +31,9 @@ import datasets
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from .bigbiohub import kb_features
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from .bigbiohub import BigBioConfig
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from .bigbiohub import Tasks
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_LANGUAGES = ['English']
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_PUBMED = True
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@@ -216,7 +219,7 @@ class CellFinderDataset(datasets.GeneratorBasedBuilder):
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continue
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# Read brat annotations for the given text file and convert example to the source format
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brat_example =
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source_example = self._to_source_example(file, brat_example)
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yield source_example["document_id"], source_example
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@@ -232,8 +235,8 @@ class CellFinderDataset(datasets.GeneratorBasedBuilder):
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continue
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# Read brat annotations for the given text file and convert example to the BigBio-KB format
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brat_example =
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kb_example =
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kb_example["id"] = kb_example["document_id"]
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# Fix text type annotation for the converted example
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from .bigbiohub import kb_features
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from .bigbiohub import BigBioConfig
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from .bigbiohub import Tasks
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from .bigbiohub import parse_brat_file
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from .bigbiohub import brat_parse_to_bigbio_kb
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_LANGUAGES = ['English']
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_PUBMED = True
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continue
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# Read brat annotations for the given text file and convert example to the source format
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brat_example = parse_brat_file(file)
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source_example = self._to_source_example(file, brat_example)
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yield source_example["document_id"], source_example
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continue
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# Read brat annotations for the given text file and convert example to the BigBio-KB format
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brat_example = parse_brat_file(file)
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kb_example = brat_parse_to_bigbio_kb(brat_example)
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kb_example["id"] = kb_example["document_id"]
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# Fix text type annotation for the converted example
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