fix bigbio imports

genia_ptm_event_corpus.py

@@ -30,6 +30,9 @@ import datasets
 from .bigbiohub import kb_features
 from .bigbiohub import BigBioConfig
 from .bigbiohub import Tasks
+from .bigbiohub import parse_brat_file
+from .bigbiohub import brat_parse_to_bigbio_kb
+
 
 _LANGUAGES = ['English']
 _PUBMED = True
@@ -194,7 +197,7 @@ class GeniaPtmEventCorpusDataset(datasets.GeneratorBasedBuilder):
                 if filename.endswith(".txt"):
                     txt_file_path = Path(dirpath, filename)
                     if self.config.schema == "source":
-                        example = parsing.parse_brat_file(
+                        example = parse_brat_file(
                             txt_file_path, annotation_file_suffixes=[".a1", ".a2"]
                         )
                         example["id"] = str(guid)
@@ -202,8 +205,8 @@ class GeniaPtmEventCorpusDataset(datasets.GeneratorBasedBuilder):
                             del example[key]
                         yield guid, example
                     elif self.config.schema == "bigbio_kb":
-                        example = parsing.brat_parse_to_bigbio_kb(
-                            parsing.parse_brat_file(txt_file_path)
+                        example = brat_parse_to_bigbio_kb(
+                            parse_brat_file(txt_file_path)
                         )
                         example["id"] = str(guid)
                         yield guid, example