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gabrielaltay albertvillanova HF staff commited on
Commit
caa903b
1 Parent(s): b7d5818

Support streaming (#1)

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- Download only required data files (cc09f106da421dba4f66151d3d9c8cbeebaa6204)


Co-authored-by: Albert Villanova <albertvillanova@users.noreply.huggingface.co>

Files changed (1) hide show
  1. hprd50.py +8 -12
hprd50.py CHANGED
@@ -29,8 +29,6 @@ Because the dataset contains entities and relations, it is suitable for Named En
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  Recognition and Relation Extraction.
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  """
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- import os
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- from glob import glob
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  from typing import Dict, List, Tuple
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  from xml.etree import ElementTree
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@@ -81,7 +79,10 @@ _HOMEPAGE = ""
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  _LICENSE = 'License information unavailable'
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  _URLS = {
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- _DATASETNAME: "https://github.com/metalrt/ppi-dataset/zipball/master",
 
 
 
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  }
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  _SUPPORTED_TASKS = [
@@ -285,30 +286,25 @@ class HPRD50Dataset(datasets.GeneratorBasedBuilder):
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  def _split_generators(self, dl_manager) -> List[datasets.SplitGenerator]:
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  """Returns SplitGenerators."""
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  urls = _URLS[_DATASETNAME]
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- data_dir = dl_manager.download_and_extract(urls)
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- # Files are actually a few levels down, under this subdirectory, and
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- # intermediate directory names get hashed so this is the easiest way to find it.
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- data_dir = glob(f"{data_dir}/**/csv_output")[0]
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
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  # Whatever you put in gen_kwargs will be passed to _generate_examples
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  gen_kwargs={
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- "filepath": os.path.join(data_dir, "HPRD50-train.xml"),
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- "split": "train",
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  },
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  ),
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  datasets.SplitGenerator(
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  name=datasets.Split.TEST,
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  gen_kwargs={
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- "filepath": os.path.join(data_dir, "HPRD50-test.xml"),
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- "split": "test",
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  },
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  ),
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  ]
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- def _generate_examples(self, filepath, split: str) -> Tuple[int, Dict]:
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  """Yields examples as (key, example) tuples."""
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  with open(filepath, "r") as f:
 
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  Recognition and Relation Extraction.
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  """
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  from typing import Dict, List, Tuple
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  from xml.etree import ElementTree
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  _LICENSE = 'License information unavailable'
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  _URLS = {
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+ _DATASETNAME: {
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+ "train": "https://github.com/metalrt/ppi-dataset/raw/master/csv_output/HPRD50-train.xml",
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+ "test": "https://github.com/metalrt/ppi-dataset/raw/master/csv_output/HPRD50-test.xml",
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+ },
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  }
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  _SUPPORTED_TASKS = [
 
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  def _split_generators(self, dl_manager) -> List[datasets.SplitGenerator]:
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  """Returns SplitGenerators."""
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  urls = _URLS[_DATASETNAME]
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+ data_dir = dl_manager.download(urls)
 
 
 
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
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  # Whatever you put in gen_kwargs will be passed to _generate_examples
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  gen_kwargs={
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+ "filepath": data_dir["train"],
 
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  },
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  ),
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  datasets.SplitGenerator(
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  name=datasets.Split.TEST,
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  gen_kwargs={
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+ "filepath": data_dir["test"],
 
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  },
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  ),
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  ]
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+ def _generate_examples(self, filepath) -> Tuple[int, Dict]:
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  """Yields examples as (key, example) tuples."""
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  with open(filepath, "r") as f: