gabrielaltay
commited on
Commit
·
2e28435
1
Parent(s):
531566b
fix bigbio imports
Browse files- meddocan.py +5 -3
meddocan.py
CHANGED
@@ -30,6 +30,8 @@ import datasets
|
|
30 |
from .bigbiohub import kb_features
|
31 |
from .bigbiohub import BigBioConfig
|
32 |
from .bigbiohub import Tasks
|
|
|
|
|
33 |
|
34 |
_LANGUAGES = ['Spanish']
|
35 |
_PUBMED = False
|
@@ -232,15 +234,15 @@ class MeddocanDataset(datasets.GeneratorBasedBuilder):
|
|
232 |
|
233 |
if self.config.schema == "source":
|
234 |
for guid, txt_file in enumerate(txt_files):
|
235 |
-
example =
|
236 |
|
237 |
example["id"] = str(guid)
|
238 |
yield guid, example
|
239 |
|
240 |
elif self.config.schema == "bigbio_kb":
|
241 |
for guid, txt_file in enumerate(txt_files):
|
242 |
-
example =
|
243 |
-
|
244 |
)
|
245 |
example["id"] = str(guid)
|
246 |
yield guid, example
|
|
|
30 |
from .bigbiohub import kb_features
|
31 |
from .bigbiohub import BigBioConfig
|
32 |
from .bigbiohub import Tasks
|
33 |
+
from .bigbiohub import parse_brat_file
|
34 |
+
from .bigbiohub import brat_parse_to_bigbio_kb
|
35 |
|
36 |
_LANGUAGES = ['Spanish']
|
37 |
_PUBMED = False
|
|
|
234 |
|
235 |
if self.config.schema == "source":
|
236 |
for guid, txt_file in enumerate(txt_files):
|
237 |
+
example = parse_brat_file(txt_file)
|
238 |
|
239 |
example["id"] = str(guid)
|
240 |
yield guid, example
|
241 |
|
242 |
elif self.config.schema == "bigbio_kb":
|
243 |
for guid, txt_file in enumerate(txt_files):
|
244 |
+
example = brat_parse_to_bigbio_kb(
|
245 |
+
parse_brat_file(txt_file)
|
246 |
)
|
247 |
example["id"] = str(guid)
|
248 |
yield guid, example
|