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boettiger-lab
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carbon

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cboettig commited on Apr 23, 2024

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da43bcd

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map

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README.md +13 -1
map.html +227 -0
map.py +48 -0

README.md CHANGED Viewed

@@ -1,3 +1,15 @@
 ---
-license: cc-by-nc-4.0
 ---

 ---
+license: pddl
 ---
+# Irrecoverable Carbon
+Cloud optimized geotiffs (COGs) of the Conservation International Irrecoverable Carbon layers.
+- Description in original publication: https://doi.org/10.1038/s41893-021-00803-6
+- Raw data accessed from https://doi.org/10.5281/zenodo.4091028
+[Example leaflet map](https://data.source.coop/cboettig/carbon/map.html)

map.html ADDED Viewed

	@@ -0,0 +1,227 @@

+<!DOCTYPE html>
+<html>
+<head>
+    <meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+        <script>
+            L_NO_TOUCH = false;
+            L_DISABLE_3D = false;
+        </script>
+    <style>html, body {width: 100%;height: 100%;margin: 0;padding: 0;}</style>
+    <style>#map {position:absolute;top:0;bottom:0;right:0;left:0;}</style>
+    <script src="https://cdn.jsdelivr.net/npm/leaflet@1.9.3/dist/leaflet.js"></script>
+    <script src="https://code.jquery.com/jquery-3.7.1.min.js"></script>
+    <script src="https://cdn.jsdelivr.net/npm/bootstrap@5.2.2/dist/js/bootstrap.bundle.min.js"></script>
+    <script src="https://cdnjs.cloudflare.com/ajax/libs/Leaflet.awesome-markers/2.0.2/leaflet.awesome-markers.js"></script>
+    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/leaflet@1.9.3/dist/leaflet.css"/>
+    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap@5.2.2/dist/css/bootstrap.min.css"/>
+    <link rel="stylesheet" href="https://netdna.bootstrapcdn.com/bootstrap/3.0.0/css/bootstrap.min.css"/>
+    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/@fortawesome/fontawesome-free@6.2.0/css/all.min.css"/>
+    <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/Leaflet.awesome-markers/2.0.2/leaflet.awesome-markers.css"/>
+    <link rel="stylesheet" href="https://cdn.jsdelivr.net/gh/python-visualization/folium/folium/templates/leaflet.awesome.rotate.min.css"/>
+            <meta name="viewport" content="width=device-width,
+                initial-scale=1.0, maximum-scale=1.0, user-scalable=no" />
+            <style>
+                #map_a38d673f0ca359284ff75234a5c268cd {
+                    position: relative;
+                    width: 100.0%;
+                    height: 100.0%;
+                    left: 0.0%;
+                    top: 0.0%;
+                }
+                .leaflet-container { font-size: 1rem; }
+            </style>
+    <script src="https://cdn.jsdelivr.net/npm/leaflet.fullscreen@3.0.0/Control.FullScreen.min.js"></script>
+    <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/leaflet.fullscreen@3.0.0/Control.FullScreen.css"/>
+    <script src="https://cdnjs.cloudflare.com/ajax/libs/leaflet.draw/1.0.2/leaflet.draw.js"></script>
+    <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/leaflet.draw/1.0.2/leaflet.draw.css"/>
+    <script src="https://cdn.jsdelivr.net/gh/ljagis/leaflet-measure@2.1.7/dist/leaflet-measure.min.js"></script>
+    <link rel="stylesheet" href="https://cdn.jsdelivr.net/gh/ljagis/leaflet-measure@2.1.7/dist/leaflet-measure.min.css"/>
+    <script src="https://unpkg.com/leaflet-control-geocoder/dist/Control.Geocoder.js"></script>
+    <link rel="stylesheet" href="https://unpkg.com/leaflet-control-geocoder/dist/Control.Geocoder.css"/>
+</head>
+<body>
+            <div class="folium-map" id="map_a38d673f0ca359284ff75234a5c268cd" ></div>
+</body>
+<script>
+            var map_a38d673f0ca359284ff75234a5c268cd = L.map(
+                "map_a38d673f0ca359284ff75234a5c268cd",
+                {
+                    center: [35.0, -100.0],
+                    crs: L.CRS.EPSG3857,
+                    zoom: 3,
+                    zoomControl: true,
+                    preferCanvas: false,
+                    drawExport: false,
+                    layersControl: true,
+                }
+            );
+            L.control.scale().addTo(map_a38d673f0ca359284ff75234a5c268cd);
+            var tile_layer_a0f43a1f4ce0b17ace3206fa0fa4c8b7 = L.tileLayer(
+                "https://tile.openstreetmap.org/{z}/{x}/{y}.png",
+                {"attribution": "\u0026copy; \u003ca href=\"https://www.openstreetmap.org/copyright\"\u003eOpenStreetMap\u003c/a\u003e contributors", "detectRetina": false, "maxNativeZoom": 19, "maxZoom": 19, "minZoom": 0, "noWrap": false, "opacity": 1, "subdomains": "abc", "tms": false}
+            );
+            tile_layer_a0f43a1f4ce0b17ace3206fa0fa4c8b7.addTo(map_a38d673f0ca359284ff75234a5c268cd);
+            L.control.fullscreen(
+                {"forceSeparateButton": false, "position": "topleft", "title": "Full Screen", "titleCancel": "Exit Full Screen"}
+            ).addTo(map_a38d673f0ca359284ff75234a5c268cd);
+            var options = {
+              position: "topleft",
+              draw: {},
+              edit: {},
+            }
+            // FeatureGroup is to store editable layers.
+            var drawnItems_draw_control_808af41363548a2d2b92a7aa5eca421a = new L.featureGroup().addTo(
+                map_a38d673f0ca359284ff75234a5c268cd
+            );
+            options.edit.featureGroup = drawnItems_draw_control_808af41363548a2d2b92a7aa5eca421a;
+            var draw_control_808af41363548a2d2b92a7aa5eca421a = new L.Control.Draw(
+                options
+            ).addTo( map_a38d673f0ca359284ff75234a5c268cd );
+            map_a38d673f0ca359284ff75234a5c268cd.on(L.Draw.Event.CREATED, function(e) {
+                var layer = e.layer,
+                    type = e.layerType;
+                var coords = JSON.stringify(layer.toGeoJSON());
+                layer.on('click', function() {
+                    alert(coords);
+                    console.log(coords);
+                });
+                drawnItems_draw_control_808af41363548a2d2b92a7aa5eca421a.addLayer(layer);
+             });
+            map_a38d673f0ca359284ff75234a5c268cd.on('draw:created', function(e) {
+                drawnItems_draw_control_808af41363548a2d2b92a7aa5eca421a.addLayer(e.layer);
+            });
+            var measure_control_0c1c542019b321e96d86057798ae17cd = new L.Control.Measure(
+                {"position": "bottomleft", "primaryAreaUnit": "sqmeters", "primaryLengthUnit": "meters", "secondaryAreaUnit": "acres", "secondaryLengthUnit": "miles"});
+            map_a38d673f0ca359284ff75234a5c268cd.addControl(measure_control_0c1c542019b321e96d86057798ae17cd);
+            // Workaround for using this plugin with Leaflet>=1.8.0
+            // https://github.com/ljagis/leaflet-measure/issues/171
+            L.Control.Measure.include({
+                _setCaptureMarkerIcon: function () {
+                    // disable autopan
+                    this._captureMarker.options.autoPanOnFocus = false;
+                    // default function
+                    this._captureMarker.setIcon(
+                        L.divIcon({
+                            iconSize: this._map.getSize().multiplyBy(2)
+                        })
+                    );
+                },
+            });
+            var geocoderOpts_geocoder_f4b44377845319e1748a4a93f7a8a3c9 = {"collapsed": true, "defaultMarkGeocode": true, "position": "topleft", "provider": "nominatim", "providerOptions": {}, "zoom": 11};
+            // note: geocoder name should start with lowercase
+            var geocoderName_geocoder_f4b44377845319e1748a4a93f7a8a3c9 = geocoderOpts_geocoder_f4b44377845319e1748a4a93f7a8a3c9["provider"];
+            var customGeocoder_geocoder_f4b44377845319e1748a4a93f7a8a3c9 = L.Control.Geocoder[ geocoderName_geocoder_f4b44377845319e1748a4a93f7a8a3c9 ](
+                geocoderOpts_geocoder_f4b44377845319e1748a4a93f7a8a3c9['providerOptions']
+            );
+            geocoderOpts_geocoder_f4b44377845319e1748a4a93f7a8a3c9["geocoder"] = customGeocoder_geocoder_f4b44377845319e1748a4a93f7a8a3c9;
+            L.Control.geocoder(
+                geocoderOpts_geocoder_f4b44377845319e1748a4a93f7a8a3c9
+            ).on('markgeocode', function(e) {
+                var zoom = geocoderOpts_geocoder_f4b44377845319e1748a4a93f7a8a3c9['zoom'] || map_a38d673f0ca359284ff75234a5c268cd.getZoom();
+                map_a38d673f0ca359284ff75234a5c268cd.setView(e.geocode.center, zoom);
+            }).addTo(map_a38d673f0ca359284ff75234a5c268cd);
+            map_a38d673f0ca359284ff75234a5c268cd.fitBounds(
+                [[35, -100], [35, -100]],
+                {"maxZoom": 3}
+            );
+            var tile_layer_09f082ba129b7c369be9eb5354b7a840 = L.tileLayer(
+                "https://titiler.xyz/cog/tiles/WebMercatorQuad/{z}/{x}/{y}@1x?transparent_bg=True\u0026url=https%3A%2F%2Fdata.source.coop%2Fcboettig%2Fcarbon%2Fcogs%2Firrecoverable_c_total_2018.tif\u0026colormap_name=reds\u0026bidx=1\u0026rescale=0.0%2C161.0",
+                {"attribution": ".", "detectRetina": false, "maxNativeZoom": 30, "maxZoom": 30, "minZoom": 0, "noWrap": false, "opacity": 0.8, "subdomains": "abc", "tms": false}
+            );
+            tile_layer_09f082ba129b7c369be9eb5354b7a840.addTo(map_a38d673f0ca359284ff75234a5c268cd);
+            map_a38d673f0ca359284ff75234a5c268cd.fitBounds(
+                [[-60.00068614227767, -179.99999999999994], [84.00039183113232, 180.00000000000006]],
+                {}
+            );
+            var tile_layer_687b2f3cc47d6a32950f67507028fcfc = L.tileLayer(
+                "https://titiler.xyz/cog/tiles/WebMercatorQuad/{z}/{x}/{y}@1x?transparent_bg=True\u0026url=https%3A%2F%2Fdata.source.coop%2Fcboettig%2Fcarbon%2Fcogs%2Fvulnerable_c_total_2018.tif\u0026colormap_name=purples\u0026bidx=1\u0026rescale=0.0%2C218.0",
+                {"attribution": ".", "detectRetina": false, "maxNativeZoom": 30, "maxZoom": 30, "minZoom": 0, "noWrap": false, "opacity": 0.8, "subdomains": "abc", "tms": false}
+            );
+            tile_layer_687b2f3cc47d6a32950f67507028fcfc.addTo(map_a38d673f0ca359284ff75234a5c268cd);
+            map_a38d673f0ca359284ff75234a5c268cd.fitBounds(
+                [[-60.00068614227767, -180.0], [84.00039183113232, 180.0]],
+                {}
+            );
+            var tile_layer_952663c645c5fb6f6915c17e9af14a2e = L.tileLayer(
+                "https://titiler.xyz/cog/tiles/WebMercatorQuad/{z}/{x}/{y}@1x?transparent_bg=True\u0026url=https%3A%2F%2Fdata.source.coop%2Fcboettig%2Fcarbon%2Fcogs%2Fmanageable_c_total_2018.tif\u0026colormap_name=greens\u0026bidx=1\u0026rescale=0.0%2C296.0",
+                {"attribution": ".", "detectRetina": false, "maxNativeZoom": 30, "maxZoom": 30, "minZoom": 0, "noWrap": false, "opacity": 0.8, "subdomains": "abc", "tms": false}
+            );
+            tile_layer_952663c645c5fb6f6915c17e9af14a2e.addTo(map_a38d673f0ca359284ff75234a5c268cd);
+            map_a38d673f0ca359284ff75234a5c268cd.fitBounds(
+                [[-60.0006861422776, -179.99999999999994], [84.00039183113239, 180.00000000000006]],
+                {}
+            );
+            var layer_control_4cd4aee3c1134b6f935f7fe3dd767b0a_layers = {
+                base_layers : {
+                    "openstreetmap" : tile_layer_a0f43a1f4ce0b17ace3206fa0fa4c8b7,
+                },
+                overlays :  {
+                    "irrecoverable carbon" : tile_layer_09f082ba129b7c369be9eb5354b7a840,
+                    "vulnerable carbon" : tile_layer_687b2f3cc47d6a32950f67507028fcfc,
+                    "manageable carbon" : tile_layer_952663c645c5fb6f6915c17e9af14a2e,
+                },
+            };
+            let layer_control_4cd4aee3c1134b6f935f7fe3dd767b0a = L.control.layers(
+                layer_control_4cd4aee3c1134b6f935f7fe3dd767b0a_layers.base_layers,
+                layer_control_4cd4aee3c1134b6f935f7fe3dd767b0a_layers.overlays,
+                {"autoZIndex": true, "collapsed": true, "position": "topright"}
+            ).addTo(map_a38d673f0ca359284ff75234a5c268cd);
+</script>
+</html>

map.py ADDED Viewed

	@@ -0,0 +1,48 @@

+# -*- coding: utf-8 -*-
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+import leafmap.foliumap as leafmap
+# +
+from pathlib import Path
+files = [path for path in Path('.').glob('**/*.tif')]
+done = [path for path in Path('.').glob('cogs/*.tif')]
+# -
+B = [x.name for x in done]
+A = [x.name.lower() for x in files]
+C=[i for i in A if i not in B]
+C
+# +
+for x in inputs:
+    dest = "cogs/" + x.name.lower()
+    leafmap.image_to_cog(str(x), dest)
+# +
+m = leafmap.Map(center=[35, -100], zoom=3)
+#m.add_basemap("Esri.WorldGrayCanvas")
+#m.add_cog_layer("https://data.source.coop/cboettig/mobi/species-richness-all/SpeciesRichness_All.tif", palette="Reds", name="Richness", nodata=0, transparent_bg=True, opacity = 0.9)
+m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/irrecoverable_c_total_2018.tif", palette="reds", name="irrecoverable carbon", transparent_bg=True, opacity = 0.8)
+m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/vulnerable_c_total_2018.tif", palette="purples", name="vulnerable carbon", transparent_bg=True, opacity = 0.8)
+m.add_cog_layer("https://data.source.coop/cboettig/carbon/cogs/manageable_c_total_2018.tif", palette="greens", name="manageable carbon", transparent_bg=True, opacity = 0.8)
+m.to_html("map.html")
+m