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CodeRAG-Bench 8

from __future__ import print_function, absolute_import, division, unicode_literals try: import numpy except: # NOQA numpy = None def Xtest_numpy(): import srsly.ruamel_yaml if numpy is None: return data = numpy.arange(10) print("data", type(data), data) yaml_str = srsly.ruamel_yaml.dump(data) datb = srsly.ruamel_yaml.load(yaml_str) print("datb", type(datb), datb) print("\nYAML", yaml_str) assert data == datb

"""Tests for tf.keras models using tf.distribute.Strategy.""" from __future__ import absolute_import from __future__ import division from __future__ import print_function from absl.testing import parameterized import numpy as np from tensorflow.python import keras from tensorflow.python.data.experimental.ops import cardinality from tensorflow.python.data.ops import dataset_ops from tensorflow.python.distribute import combinations from tensorflow.python.distribute import distribution_strategy_context from tensorflow.python.distribute import mirrored_strategy from tensorflow.python.distribute import strategy_combinations from tensorflow.python.distribute import tpu_strategy from tensorflow.python.eager import test from tensorflow.python.keras import testing_utils from tensorflow.python.keras.distribute import distributed_training_utils from tensorflow.python.keras.optimizer_v2 import gradient_descent as gradient_descent_keras from tensorflow.python.ops import array_ops from tensorflow.python.ops import math_ops from tensorflow.python.ops.losses import loss_reduction from tensorflow.python.training import gradient_descent from tensorflow.python.training import rmsprop _RANDOM_SEED = 1337 _TRAIN_SIZE = 200 _INPUT_SIZE = (10,) _NUM_CLASS = 2 # Note: Please make sure the tests in this file are also covered in # keras_backward_compat_test for features that are supported with both APIs. # TODO(anjalisridhar): Add a decorator that will allow us to run these tests as # part of the tf.keras unit tests suite. def simple_sequential_model(): model = keras.models.Sequential() model.add(keras.layers.Dense(16, activation='relu', input_shape=_INPUT_SIZE)) model.add(keras.layers.Dropout(0.1)) model.add(keras.layers.Dense(_NUM_CLASS, activation='softmax')) return model def simple_subclassed_model(num_labels=_NUM_CLASS): class _SimpleMLP(keras.Model): def __init__(self, num_labels): super(_SimpleMLP, self).__init__() self.dense = keras.layers.Dense(num_labels) def call(self, inputs): return self.dense(inputs) return _SimpleMLP(num_labels) def simple_multi_inputs_multi_outputs_model(): input_a = keras.layers.Input(shape=(16,), name='input_a') input_b = keras.layers.Input(shape=(16,), name='input_b') merged = keras.layers.concatenate([input_a, input_b], name='merge') output_c = keras.layers.Dense(3, activation='softmax', name='dense_2')(merged) output_d = keras.layers.Dense(2, activation='softmax', name='dense_3')(merged) model = keras.models.Model( inputs=[input_a, input_b], outputs=[output_c, output_d]) return model def get_multi_inputs_multi_outputs_data(): (a_train, c_train), (a_test, c_test) = testing_utils.get_test_data( train_samples=_TRAIN_SIZE, test_samples=50, input_shape=(16,), num_classes=3, random_seed=_RANDOM_SEED) (b_train, d_train), (b_test, d_test) = testing_utils.get_test_data( train_samples=_TRAIN_SIZE, test_samples=50, input_shape=(16,), num_classes=2, random_seed=_RANDOM_SEED) (m_train, _), (m_test, _) = testing_utils.get_test_data( train_samples=_TRAIN_SIZE, test_samples=50, input_shape=(8,), num_classes=2, random_seed=_RANDOM_SEED) c_train = keras.utils.to_categorical(c_train) c_test = keras.utils.to_categorical(c_test) d_train = keras.utils.to_categorical(d_train) d_test = keras.utils.to_categorical(d_test) train_data = { 'input_a': a_train, 'input_b': b_train, 'input_m': m_train, 'output_c': c_train, 'output_d': d_train } test_data = { 'input_a': a_test, 'input_b': b_test, 'input_m': m_test, 'output_c': c_test, 'output_d': d_test } return (train_data, test_data) def batch_wrapper(dataset, batch_size, distribution, repeat=None): if repeat: dataset = dataset.repeat(repeat) # TPUs currently require fully defined input shapes, drop_remainder ensures # the input will have fully defined shapes. if isinstance(distribution, (tpu_strategy.TPUStrategy, tpu_strategy.TPUStrategyV1)): return dataset.batch(batch_size, drop_remainder=True) else: return dataset.batch(batch_size) def get_model(): x = keras.layers.Input(shape=(3,), name='input') y = keras.layers.Dense(4, name='dense')(x) model = keras.Model(x, y) return model def get_sample_weights_model(): x = keras.layers.Input(shape=(1,), name='input') y = keras.layers.Dense( 1, kernel_initializer='ones', bias_initializer='zeros', name='dense')(x) model = keras.Model(x, y) return model def get_dataset(distribution): inputs = np.zeros((10, 3), dtype=np.float32) targets = np.zeros((10, 4), dtype=np.float32) dataset = dataset_ops.Dataset.from_tensor_slices((inputs, targets)) dataset = dataset.repeat(100) dataset = batch_wrapper(dataset, 10, distribution) return dataset def get_predict_dataset(distribution): inputs = np.zeros((10, 3), dtype=np.float32) dataset = dataset_ops.Dataset.from_tensor_slices(inputs) dataset = dataset.repeat(100) dataset = batch_wrapper(dataset, 10, distribution) return dataset def convert_numpy_to_dataset_with_unknown_cardinality(inputs, targets=None): if targets is not None: input_slices = (inputs, targets) dummy_op = (lambda inp, target: True) else: input_slices = inputs dummy_op = (lambda inp: True) original_dataset = (dataset_ops.Dataset.from_tensor_slices( input_slices)) ds_with_unknown_cardinality = (original_dataset.filter(dummy_op). batch(10, drop_remainder=True)) return ds_with_unknown_cardinality def multi_input_output_model(): a = keras.layers.Input(shape=(3,), name='input_a') b = keras.layers.Input(shape=(5,), name='input_b') # TODO(anjalisridhar): Change the output dimension of the second Dense layer # once the iterator output validation issue has been fixed. dense_1 = keras.layers.Dense(7, name='dense_1') dense_2 = keras.layers.Dense(7, name='dense_2') c = dense_1(a) d = dense_2(b) e = keras.layers.Dropout(0.5, name='dropout')(c) model = keras.models.Model([a, b], [d, e]) return model strategies_minus_default_minus_tpu = [ strategy_combinations.one_device_strategy, strategy_combinations.one_device_strategy_gpu, strategy_combinations.mirrored_strategy_with_gpu_and_cpu, strategy_combinations.mirrored_strategy_with_two_gpus ] strategies_minus_tpu = [ strategy_combinations.default_strategy, strategy_combinations.one_device_strategy, strategy_combinations.one_device_strategy_gpu, strategy_combinations.mirrored_strategy_with_gpu_and_cpu, strategy_combinations.mirrored_strategy_with_two_gpus ] tpu_strategies = [ strategy_combinations.tpu_strategy, # steps_per_run=2 strategy_combinations.tpu_strategy_one_step ] def strategy_minus_tpu_combinations(): return combinations.combine(distribution=strategies_minus_tpu, mode=['graph', 'eager']) def tpu_strategy_combinations(): return combinations.combine(distribution=tpu_strategies, mode=['graph', 'eager']) def tpu_strategy_combinations_graph_only(): return combinations.combine(distribution=tpu_strategies, mode=['graph']) def all_strategy_combinations(): return strategy_minus_tpu_combinations() + tpu_strategy_combinations() def all_strategy_combinations_plus_cloning(): return ( combinations.combine( distribution=strategies_minus_tpu, mode=['graph', 'eager'], cloning=[True, False]) + combinations.combine( distribution=tpu_strategies, mode=['graph', 'eager'], cloning=[False])) def all_strategy_minus_default_and_tpu_combinations(): return combinations.combine( distribution=[ strategy_combinations.one_device_strategy, strategy_combinations.one_device_strategy_gpu, strategy_combinations.mirrored_strategy_with_gpu_and_cpu, strategy_combinations.mirrored_strategy_with_two_gpus, ], mode=['graph', 'eager']) def all_strategy_combinations_minus_default(): return (all_strategy_minus_default_and_tpu_combinations() + tpu_strategy_combinations()) def strategy_and_optimizer_combinations(): non_tpu_strategies = combinations.times( strategy_minus_tpu_combinations(), # TODO(b/130808953): Simplify when optimizers v1 work with cloning=False. combinations.combine( optimizer=[ strategy_combinations.adagrad_optimizer_v1_fn, strategy_combinations.adam_optimizer_v1_fn, strategy_combinations.gradient_descent_optimizer_v1_fn, strategy_combinations.rmsprop_optimizer_v1_fn, ], cloning=True) + combinations.combine( optimizer=[ strategy_combinations.adagrad_optimizer_keras_v2_fn, strategy_combinations.adam_optimizer_keras_v2_fn, strategy_combinations.gradient_descent_optimizer_keras_v2_fn, strategy_combinations.rmsprop_optimizer_keras_v2_fn ], cloning=[True, False])) # TODO(b/130808953): Simplify when optimizers v1 work with cloning=False. tpu_strategies_graph = combinations.combine( distribution=tpu_strategies, mode=['graph'], cloning=[True], optimizer=[ strategy_combinations.adagrad_optimizer_v1_fn, strategy_combinations.adam_optimizer_v1_fn, strategy_combinations.gradient_descent_optimizer_v1_fn, strategy_combinations.rmsprop_optimizer_v1_fn, strategy_combinations.adagrad_optimizer_keras_v2_fn, strategy_combinations.adam_optimizer_keras_v2_fn, strategy_combinations.gradient_descent_optimizer_keras_v2_fn, strategy_combinations.rmsprop_optimizer_keras_v2_fn ]) tpu_strategies_eager = combinations.combine( distribution=tpu_strategies, mode=['eager'], cloning=[False], optimizer=[ strategy_combinations.adagrad_optimizer_keras_v2_fn, strategy_combinations.adam_optimizer_keras_v2_fn, strategy_combinations.gradient_descent_optimizer_keras_v2_fn, strategy_combinations.rmsprop_optimizer_keras_v2_fn ]) return non_tpu_strategies + tpu_strategies_eager + tpu_strategies_graph class TestDistributionStrategyWithNumpyArrays(test.TestCase, parameterized.TestCase): @combinations.generate(all_strategy_combinations()) def test_calculating_input_params_no_steps_no_batch_size(self, distribution): # Calculate the per_replica_batch_size scaling factor for strategies # that use per_core_batch_size replica_scale_factor = 1.0 if not distributed_training_utils.global_batch_size_supported(distribution): replica_scale_factor = distribution.num_replicas_in_sync with self.cached_session(): # Input samples of different sizes input_20_samples = np.zeros((20, 3), dtype=np.float32) input_64_samples = np.zeros((64, 3), dtype=np.float32) # Default global batch size 32 for input with 64 samples run in 2 steps steps, batch_size = distributed_training_utils.get_input_params( distribution, input_64_samples, steps=None, batch_size=None) self.assertEqual(batch_size, 32 // replica_scale_factor) self.assertEqual(steps, 2) # Computed global batch size 20 is lower than 32 if we pass less samples. steps, batch_size = distributed_training_utils.get_input_params( distribution, input_20_samples, steps=None, batch_size=None) self.assertEqual(batch_size, 20 // replica_scale_factor) self.assertEqual(steps, 1) @combinations.generate(all_strategy_combinations()) def test_calculating_input_params_with_steps_no_batch_size(self, distribution): # Calculate the per_replica_batch_size scaling factor for strategies # that use per_core_batch_size replica_scale_factor = 1.0 if not distributed_training_utils.global_batch_size_supported(distribution): replica_scale_factor = distribution.num_replicas_in_sync with self.cached_session(): # Input samples of different sizes input_63_samples = np.zeros((63, 3), dtype=np.float32) input_64_samples = np.zeros((64, 3), dtype=np.float32) # Computed global batch size is correct for number of specified 1 step steps, batch_size = distributed_training_utils.get_input_params( distribution, input_64_samples, steps=1, batch_size=None) self.assertEqual(batch_size, 64 // replica_scale_factor) self.assertEqual(steps, 1) # Computed global batch size is correct for number of specified 2 steps steps, batch_size = distributed_training_utils.get_input_params( distribution, input_64_samples, steps=2, batch_size=None) self.assertEqual(batch_size, 32 // replica_scale_factor) self.assertEqual(steps, 2) # All samples can not be consumed in specified number of steps with self.assertRaisesRegexp(ValueError, 'not divisible by steps'): distributed_training_utils.get_input_params( distribution, input_63_samples, steps=2, batch_size=None) # This cases is different for different strategies due to the # difference in supported batch size being global or per-replica. if replica_scale_factor == 1: # Computed global batch size is correct even if not sharadable steps, batch_size = distributed_training_utils.get_input_params( distribution, input_63_samples, steps=3, batch_size=None) self.assertEqual(batch_size, 21) self.assertEqual(steps, 3) else: # Computed global batch size can not be sharded across replicas with self.assertRaisesRegexp(ValueError, 'could not be sharded evenly ' 'across the sync replicas'): distributed_training_utils.get_input_params( distribution, input_63_samples, steps=1, batch_size=None) @combinations.generate(all_strategy_combinations()) def test_calculating_input_params_no_steps_with_batch_size(self, distribution): # Calculate the per_replica_batch_size scaling factor for strategies # that use per_core_batch_size replica_scale_factor = 1.0 if not distributed_training_utils.global_batch_size_supported(distribution): replica_scale_factor = distribution.num_replicas_in_sync with self.cached_session(): input_64_samples = np.zeros((64, 3), dtype=np.float32) # Computed steps is correct for specified batch size steps, batch_size = distributed_training_utils.get_input_params( distribution, input_64_samples, steps=None, batch_size=16) self.assertEqual(batch_size, 16) self.assertEqual(steps, 4 // replica_scale_factor) # Computed steps is correct for specified batch size steps, batch_size = distributed_training_utils.get_input_params( distribution, input_64_samples, steps=None, batch_size=32) self.assertEqual(batch_size, 32) self.assertEqual(steps, 2 // replica_scale_factor) @combinations.generate(all_strategy_combinations()) def test_calculating_input_params_with_steps_with_batch_size(self, distribution): with self.cached_session(): input_64_samples = np.zeros((64, 3), dtype=np.float32) # No change to steps and batch size if both specified and feasible steps, batch_size = distributed_training_utils.get_input_params( distribution, input_64_samples, steps=5, batch_size=3) self.assertEqual(batch_size, 3) self.assertEqual(steps, 5) # Number of samples is less than global batch size * steps with self.assertRaisesRegexp(ValueError, 'less than samples required'): distributed_training_utils.get_input_params( distribution, input_64_samples, steps=10, batch_size=13) @combinations.generate(all_strategy_combinations_plus_cloning()) def test_calling_model_with_numpy_arrays(self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning or not distribution_strategy_context.has_strategy() else gradient_descent_keras.SGD) optimizer = optimizer_fn(0.001) model = get_model() loss = 'mse' metrics = ['mae'] model.compile(optimizer, loss, metrics=metrics, cloning=cloning) inputs = np.zeros((64, 3), dtype=np.float32) targets = np.zeros((64, 4), dtype=np.float32) # Call fit with validation data model.fit(inputs, targets, epochs=1, batch_size=2, verbose=0, validation_data=(inputs, targets)) # TODO(anjalisridhar): We need tests for when the batch size and steps # are smaller and results in a 0 batch_size and steps value. model.evaluate(inputs, targets) # with steps model.evaluate(inputs, targets, steps=2) # with batch_size model.evaluate(inputs, targets, batch_size=8) model.predict(inputs) # with steps model.predict(inputs, steps=2) # with batch_size model.predict(inputs, batch_size=8) @combinations.generate(all_strategy_combinations_plus_cloning()) def test_calling_model_with_nested_numpy_arrays(self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(learning_rate=0.001) model = multi_input_output_model() loss = 'mse' model.compile(optimizer, loss, cloning=cloning) input_a_np = np.asarray(np.random.random((64, 3)), dtype=np.float32) input_b_np = np.asarray(np.random.random((64, 5)), dtype=np.float32) inputs = [input_a_np, input_b_np] output_d_np = np.asarray(np.random.random((64, 7)), dtype=np.float32) output_e_np = np.asarray(np.random.random((64, 7)), dtype=np.float32) targets = [output_d_np, output_e_np] # Call fit with validation data model.fit(inputs, targets, epochs=1, batch_size=8, verbose=0) # TODO(anjalisridhar): We need tests for when the batch size and steps are # smaller and results in a 0 batch_size and steps value. model.evaluate(inputs, targets) # with steps model.evaluate(inputs, targets, steps=2) # with batch_size model.evaluate(inputs, targets, batch_size=8) model.predict(inputs) # with steps model.predict(inputs, steps=2) # with batch_size model.predict(inputs, batch_size=8) @combinations.generate( combinations.combine(distribution=strategies_minus_tpu, mode=['graph', 'eager'])) def test_numpy_with_sample_weights(self, distribution): with self.cached_session(), distribution.scope(): model = get_sample_weights_model() optimizer = rmsprop.RMSPropOptimizer(learning_rate=0.001) loss = 'mse' model.compile(optimizer, loss) inputs = np.array([[0], [1], [2], [3]], np.float32) targets = np.array([[2], [4], [6], [8]], np.float32) sample_weights = np.array([0.25, 0.5, 0.75, 1], np.float32) result = model.evaluate(inputs, targets, batch_size=2, sample_weight=sample_weights, verbose=1) # The per sample loss is multipled by the corresponding sample weight. The # average of these weighted losses is the return value of the `evaluate` # call. For example, in the test above the average weighted loss is # calculated in the following manner: # batch_1 = (((2-0)^2) * 0.25 + ((4-1)^2) * 0.5) / 2 = 5.5 / 2 = 2.75 # batch_2 = (((6-2)^2 * 0.75) + ((8-3)^2 * 1)) / 2 = 37 / 2 = 18.5 # final result = (batch_1 + batch_2) / 2 = 10.625. # The first time we divide by number of input samples and the second time # we divide by number of steps/batches that the loss is aggregated over. self.assertAllClose(result, 10.625) # We now test without passing sample_weights: # batch_1 = ((2-0)^2) + ((4-1)^2) / 2 = 13 / 2 = 6.5 # batch_2 = ((6-2)^2) + ((8-3)^2) / 2 = 41 / 2 = 20.5 # final result = (batch_1 + batch_2) / 2 = 27 / 2 = 13.5 result = model.evaluate(inputs, targets, batch_size=2, verbose=1) self.assertAllClose(result, 13.5) @combinations.generate( combinations.combine(distribution=strategies_minus_default_minus_tpu, mode=['eager'])) def test_numpy_with_sample_weights_eager_with_cloning(self, distribution): with self.cached_session(), distribution.scope(): model = get_sample_weights_model() optimizer = rmsprop.RMSPropOptimizer(learning_rate=0.001) loss = 'mse' model.compile(optimizer, loss, cloning=True) inputs = np.array([[0], [1], [2], [3]], np.float32) targets = np.array([[2], [4], [6], [8]], np.float32) sample_weights = np.array([0.25, 0.5, 0.75, 1], np.float32) with self.assertRaisesRegexp(NotImplementedError, '`sample_weight` is not supported when ' 'using tf.distribute.Strategy in '): model.evaluate(inputs, targets, batch_size=2, sample_weight=sample_weights, verbose=1) @combinations.generate(all_strategy_combinations_plus_cloning()) def test_flatten_predict_outputs(self, distribution, cloning): with self.cached_session(): with distribution.scope(): model = multi_input_output_model() # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(learning_rate=0.001) loss = 'mse' model.compile(optimizer, loss, cloning=cloning) # We take 6 input samples with each input having a dimension of 3 or 5. input_a_np = np.asarray(np.random.random((6, 3)), dtype=np.float32) input_b_np = np.asarray(np.random.random((6, 5)), dtype=np.float32) inputs = [input_a_np, input_b_np] outs = model.predict(inputs, steps=1) # `predict` a list that is equal in length to the number of model outputs. # In this test our model has two outputs and each element of `outs` # corresponds to all the samples of one of the model outputs. self.assertLen(outs, 2) # Each of the output samples have a dimension of 7. We should process all # the available input samples(6). self.assertAllEqual([6, 7], outs[0].shape) self.assertAllEqual([6, 7], outs[1].shape) @combinations.generate( combinations.times(tpu_strategy_combinations_graph_only(), combinations.combine(batch_size=[4, 6]))) def test_evaluate_with_partial_batch(self, distribution, batch_size): with self.cached_session(): optimizer = gradient_descent.GradientDescentOptimizer(0.001) loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] with distribution.scope(): model_with_ds_strategy = get_model() model_with_ds_strategy.compile(optimizer, loss, metrics=metrics) cpu_model = get_model() cpu_model.compile(optimizer, loss, metrics=metrics) x = np.random.random((10, 3)).astype('float32') y = np.random.random((10, 4)).astype('float32') # As sample size is 10, we batch by 4 so that the last batch is # a partial batch. Also `evaluate()` using numpy array as inputs without # distribution strategy uses entire sample as a single batch. As so, # we remove parameters `batch_size` and `steps`. cpu_model.set_weights(model_with_ds_strategy.get_weights()) evaluate_ground_truth = cpu_model.evaluate(x, y) # We don't compare the loss as loss is currently not computed as metric # in Keras, the loss value is inaccurate for last partial batch due to # more weights for the last batch samples. steps = np.ceil(10.0 / batch_size) self.assertAllClose( model_with_ds_strategy.evaluate( x, y, batch_size=batch_size, steps=steps)[1:], evaluate_ground_truth[1:], atol=1e-5, rtol=1e-5) # Test that `steps` is inferred correctly when final partial batch exists. self.assertAllClose( model_with_ds_strategy.evaluate(x, y, batch_size=batch_size)[1:], evaluate_ground_truth[1:], atol=1e-5, rtol=1e-5) @combinations.generate( combinations.times(tpu_strategy_combinations_graph_only(), combinations.combine(cloning=[True, False]))) def test_predict_with_partial_batch(self, distribution, cloning): with self.cached_session(): optimizer = gradient_descent.GradientDescentOptimizer(0.001) loss = 'mse' with distribution.scope(): model_with_ds_strategy = get_model() model_with_ds_strategy.compile(optimizer, loss, cloning=cloning) cpu_model = get_model() cpu_model.compile(optimizer, loss) inputs = np.random.random((10, 3)).astype(np.float32) # As sample size is 10, we batch by 4 so that the last batch is # a partial batch. Also `predict()` using numpy array as inputs without # distribution strategy uses entire sample as a single batch. As so, # we remove parameters `batch_size` and `steps`. cpu_model.set_weights(model_with_ds_strategy.get_weights()) predict_ground_truth = cpu_model.predict(inputs) self.assertAllClose( model_with_ds_strategy.predict(inputs, batch_size=4, steps=3), predict_ground_truth, atol=1e-5, rtol=1e-5) # Test that `steps` is inferred correctly when final partial batch exists. self.assertAllClose( model_with_ds_strategy.predict(inputs, batch_size=4), predict_ground_truth, atol=1e-5, rtol=1e-5) @combinations.generate(tpu_strategy_combinations_graph_only()) def test_no_target_model(self, distribution): with self.cached_session(): optimizer = gradient_descent.GradientDescentOptimizer(0.001) class MyLayer(keras.layers.Layer): def call(self, inputs, training=None): self.add_loss(math_ops.reduce_sum(inputs), inputs=True) return inputs with distribution.scope(): model = keras.models.Sequential() model.add(keras.layers.Dense(16, activation='relu', input_shape=_INPUT_SIZE)) model.add(MyLayer()) model.add(keras.layers.Dense(_NUM_CLASS, activation='softmax')) model.compile(optimizer) inputs = np.zeros((20, 10), np.float32) model.fit(inputs, epochs=1, steps_per_epoch=2) model.predict(inputs, steps=1) model.evaluate(inputs, steps=1) @combinations.generate( combinations.times(tpu_strategy_combinations_graph_only(), combinations.combine(cloning=[True, False]))) def test_predict_multi_output_model_with_partial_batch( self, distribution, cloning): with self.cached_session(): optimizer = gradient_descent.GradientDescentOptimizer(0.001) loss = 'mse' with distribution.scope(): model_with_ds_strategy = simple_multi_inputs_multi_outputs_model() model_with_ds_strategy.compile(optimizer, loss, cloning=cloning) cpu_model = simple_multi_inputs_multi_outputs_model() cpu_model.compile(optimizer, loss) input_data, _ = get_multi_inputs_multi_outputs_data() input_dict = { 'input_a': input_data['input_a'], 'input_b': input_data['input_b'], } # As sample size is 200, we batch by 18 so that the last batch is # a partial batch. Also `fit()` using numpy array as inputs without # distribution strategy uses entire sample as a single batch. As so, # we remove parameters `batch_size` and `steps`. cpu_model.set_weights(model_with_ds_strategy.get_weights()) self.assertAllClose( model_with_ds_strategy.predict(input_dict, batch_size=18, steps=12), cpu_model.predict(input_dict), atol=1e-4, rtol=1e-4) class TestDistributionStrategyWithDatasets(test.TestCase, parameterized.TestCase): @combinations.generate(all_strategy_combinations_plus_cloning()) def test_calling_model_on_same_dataset(self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(0.001) model = get_model() loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] model.compile(optimizer, loss, metrics=metrics, cloning=cloning) dataset = get_dataset(distribution) # Call fit with validation data model.fit(dataset, epochs=1, steps_per_epoch=2, verbose=0, validation_data=dataset, validation_steps=2) model.fit(dataset, epochs=1, steps_per_epoch=2, verbose=0, validation_data=dataset, validation_steps=2) model.predict(get_predict_dataset(distribution), steps=2) @combinations.generate(all_strategy_combinations_plus_cloning()) def test_model_interleaved_eval_same_as_direct_eval(self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) user_controlled_model = get_model() user_controlled_model.compile( optimizer_fn(0.001), loss='mse', metrics=['mae', keras.metrics.CategoricalAccuracy()], cloning=cloning) interleaved_model = get_model() interleaved_model.set_weights(user_controlled_model.get_weights()) interleaved_model.compile( optimizer_fn(0.001), loss='mse', metrics=['mae', keras.metrics.CategoricalAccuracy()], cloning=cloning) dataset = get_dataset(distribution) # Call fit with validation interleaved interleaved_output = interleaved_model.fit( dataset, epochs=2, steps_per_epoch=2, verbose=1, validation_data=dataset, validation_steps=2, shuffle=False) # Manually control the validation running after each epoch. user_controlled_output = [] for _ in range(2): user_controlled_model.fit( dataset, epochs=1, steps_per_epoch=2, verbose=1, shuffle=False) user_controlled_output.append( user_controlled_model.evaluate(dataset, steps=2)) self.assertEqual(interleaved_output.history['val_loss'], [x[0] for x in user_controlled_output]) val_mean_absolute_error = interleaved_output.history.get( 'val_mean_absolute_error') if not val_mean_absolute_error: # The name of the metric changed in TF2.0 val_mean_absolute_error = interleaved_output.history['val_mae'] self.assertEqual(val_mean_absolute_error, [x[1] for x in user_controlled_output]) self.assertEqual(interleaved_output.history['val_categorical_accuracy'], [x[2] for x in user_controlled_output]) # TODO(priyag): Enable this test for TPU. Currently tuples/dict don't work # as clone_model's input_tensors argument only seems to accept list and not # tuples or dict. @combinations.generate( combinations.combine( distribution=[ strategy_combinations.mirrored_strategy_with_gpu_and_cpu ], mode=['graph', 'eager'], cloning=[True, False])) def test_fit_with_tuple_and_dict_dataset_inputs(self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(learning_rate=0.001) model = multi_input_output_model() loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] model.compile(optimizer, loss, metrics=metrics, cloning=cloning) input_a_np = np.random.random((10, 3)) input_b_np = np.random.random((10, 5)) output_d_np = np.random.random((10, 7)) output_e_np = np.random.random((10, 7)) # Test with tuples dataset_tuple = dataset_ops.Dataset.from_tensor_slices(( (input_a_np, input_b_np), (output_d_np, output_e_np))) dataset_tuple = dataset_tuple.repeat(100) dataset_tuple = dataset_tuple.batch(10) model.fit(dataset_tuple, epochs=1, steps_per_epoch=2, verbose=1) # Test with dict dataset_dict = dataset_ops.Dataset.from_tensor_slices(( {'input_a': input_a_np, 'input_b': input_b_np}, (output_d_np, output_e_np))) dataset_dict = dataset_dict.repeat(100) dataset_dict = dataset_dict.batch(10) model.fit(dataset_dict, epochs=1, steps_per_epoch=2, verbose=1) @combinations.generate(all_strategy_combinations_plus_cloning()) def test_fit_eval_and_predict_methods_on_dataset_without_steps( self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(0.001) model = get_model() loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] model.compile(optimizer, loss, metrics=metrics, cloning=cloning) inputs = np.zeros((1000, 3), dtype=np.float32) targets = np.zeros((1000, 4), dtype=np.float32) # steps/steps_per_epoch are calculated when using numpy arrays as # input data. fit_with_numpy = model.fit(inputs, targets, epochs=1, batch_size=10).history eval_with_numpy = model.evaluate(inputs, targets, batch_size=10) predict_with_numpy = model.predict(inputs, batch_size=10) dataset = dataset_ops.Dataset.from_tensor_slices((inputs, targets)) dataset = dataset.batch(10, drop_remainder=True) fit_with_ds = model.fit(dataset, epochs=1).history eval_with_ds = model.evaluate(dataset) predict_dataset = dataset_ops.Dataset.from_tensor_slices(inputs) predict_dataset = predict_dataset.batch(10, drop_remainder=True) predict_with_ds = model.predict(predict_dataset) self.assertAllClose( fit_with_numpy, fit_with_ds, atol=1e-4, rtol=1e-4) self.assertAllClose( eval_with_numpy, eval_with_ds, atol=1e-4, rtol=1e-4) self.assertAllClose( predict_with_numpy, predict_with_ds, atol=1e-4, rtol=1e-4) @combinations.generate( combinations.times(strategy_minus_tpu_combinations(), combinations.combine(cloning=[True, False]))) def test_on_dataset_with_unknown_cardinality_without_steps( self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(0.001) model = get_model() loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] model.compile(optimizer, loss, metrics=metrics, cloning=cloning) inputs = np.zeros((1000, 3), dtype=np.float32) targets = np.zeros((1000, 4), dtype=np.float32) # steps/steps_per_epoch are calculated when using numpy arrays as # input data. fit_with_numpy = model.fit(inputs, targets, epochs=1, batch_size=10).history fit_with_numpy_multiple_epochs = model.fit( inputs, targets, epochs=2, batch_size=10).history eval_with_numpy = model.evaluate(inputs, targets, batch_size=10) predict_with_numpy = model.predict(inputs, batch_size=10) dataset = convert_numpy_to_dataset_with_unknown_cardinality( inputs, targets) predict_dataset = convert_numpy_to_dataset_with_unknown_cardinality( inputs) self.assertEqual(keras.backend.get_value(cardinality.cardinality( dataset)), cardinality.UNKNOWN) self.assertEqual(keras.backend.get_value(cardinality.cardinality( predict_dataset)), cardinality.UNKNOWN) eval_with_ds = model.evaluate(dataset) predict_with_ds = model.predict(predict_dataset) self.assertAllClose( eval_with_numpy, eval_with_ds, atol=1e-4, rtol=1e-4) self.assertAllClose( predict_with_numpy, predict_with_ds, atol=1e-4, rtol=1e-4) fit_with_ds = model.fit(dataset, epochs=1).history fit_with_ds_multiple_epochs = model.fit(dataset, epochs=2).history self.assertAllClose( fit_with_numpy, fit_with_ds, atol=1e-4, rtol=1e-4) self.assertAllClose( fit_with_numpy_multiple_epochs, fit_with_ds_multiple_epochs, atol=1e-4, rtol=1e-4) @combinations.generate( combinations.times(tpu_strategy_combinations(), combinations.combine(cloning=[True, False]))) def test_on_dataset_with_unknown_cardinality(self, distribution, cloning): with self.cached_session(): with distribution.scope(): model = get_model() loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] model.compile( gradient_descent.GradientDescentOptimizer(0.001), loss, metrics=metrics, cloning=cloning) inputs = np.zeros((1000, 3), dtype=np.float32) targets = np.zeros((1000, 4), dtype=np.float32) # steps/steps_per_epoch are calculated when using numpy arrays as # input data. eval_with_numpy = model.evaluate(inputs, targets, batch_size=10) predict_with_numpy = model.predict(inputs, batch_size=10) dataset = convert_numpy_to_dataset_with_unknown_cardinality( inputs, targets) predict_dataset = convert_numpy_to_dataset_with_unknown_cardinality( inputs) self.assertEqual( keras.backend.get_value(cardinality.cardinality(dataset)), cardinality.UNKNOWN) self.assertEqual( keras.backend.get_value(cardinality.cardinality(predict_dataset)), cardinality.UNKNOWN) eval_with_ds = model.evaluate(dataset, steps=100) predict_with_ds = model.predict(predict_dataset, steps=100) self.assertAllClose(eval_with_numpy, eval_with_ds, atol=1e-4, rtol=1e-4) self.assertAllClose( predict_with_numpy, predict_with_ds, atol=1e-4, rtol=1e-4) with self.assertRaisesRegexp(ValueError, 'Number of steps could not be infered'): model.fit(dataset, epochs=1) @combinations.generate(all_strategy_combinations_plus_cloning()) def test_fit_eval_and_predict_methods_on_dataset(self, distribution, cloning): with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(0.001) model = get_model() loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] model.compile(optimizer, loss, metrics=metrics, cloning=cloning) dataset = get_dataset(distribution) model.fit(dataset, epochs=1, steps_per_epoch=2, verbose=1) model.evaluate(dataset, steps=2, verbose=1) model.predict(get_predict_dataset(distribution), steps=2) @combinations.generate(strategy_and_optimizer_combinations()) def test_fit_eval_and_predict_with_optimizer(self, distribution, optimizer, cloning): with self.cached_session(): with distribution.scope(): model = get_model() loss = 'mse' model.compile(optimizer(), loss, cloning=cloning) dataset = get_dataset(distribution) model.fit(dataset, epochs=1, steps_per_epoch=2, verbose=1) model.evaluate(dataset, steps=2, verbose=1) model.predict(get_predict_dataset(distribution), steps=2) @combinations.generate( combinations.combine( distribution=[ strategy_combinations.mirrored_strategy_with_gpu_and_cpu, strategy_combinations.one_device_strategy ], mode=['graph', 'eager'], cloning=[True, False])) def test_dataset_wrong_input_shape(self, distribution, cloning, mode): if cloning or mode == 'graph': self.skipTest('TODO(b/120943676, b/120957836): Re-enable for cloning=True' ' once the validation code is restored.') with self.cached_session(): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( rmsprop.RMSPropOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(learning_rate=0.001) model = get_model() loss = 'mse' model.compile(optimizer, loss, cloning=cloning) # Wrong input shape inputs = np.zeros((10, 5), dtype=np.float32) targets = np.zeros((10, 4), dtype=np.float32) dataset = dataset_ops.Dataset.from_tensor_slices((inputs, targets)) dataset = dataset.repeat(100) dataset = dataset.batch(10) with self.assertRaisesRegexp(ValueError, 'expected input to have shape'): model.fit(dataset, epochs=1, steps_per_epoch=2, verbose=0) @combinations.generate( combinations.combine( distribution=[ strategy_combinations.mirrored_strategy_with_gpu_and_cpu ], mode=['graph', 'eager'], cloning=[True, False])) def test_dataset_no_batch_input_validation(self, distribution, cloning, mode): if cloning or mode == 'graph': self.skipTest('TODO(b/120943676, b/120957836): Re-enable for cloning=True' ' once the validation code is restored.') with self.cached_session(): with distribution.scope(): model = get_model() optimizer = rmsprop.RMSPropOptimizer(learning_rate=0.001) loss = 'mse' model.compile(optimizer, loss, cloning=cloning) # User forgets to batch the dataset inputs = np.zeros((10, 6), dtype=np.float32) targets = np.zeros((10, 4), dtype=np.float32) dataset = dataset_ops.Dataset.from_tensor_slices((inputs, targets)) dataset = dataset.repeat(100) with self.assertRaisesRegexp(ValueError, 'Call.*batch.*on.*Dataset'): model.fit(dataset, epochs=1, steps_per_epoch=2, verbose=0) @combinations.generate( combinations.combine( distribution=[ strategy_combinations.mirrored_strategy_with_gpu_and_cpu, strategy_combinations.mirrored_strategy_with_two_gpus ], mode=['graph', 'eager'], cloning=[True, False])) def test_learning_phase_value(self, distribution, cloning): # TODO(anjalisridhar): Modify this test to use Lambdas since we can compare # meaningful values. Currently we don't pass the learning phase if the # Lambda layer uses the learning phase. with self.cached_session(): with distribution.scope(): x = keras.layers.Input(shape=(1,), name='input') y = keras.layers.Dense(1, kernel_initializer='ones')(x) z = keras.layers.Dropout(0.9999)(y) model = keras.Model(x, z) initial_weights = model.get_weights() # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( gradient_descent.GradientDescentOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(0.005) loss = 'mse' metrics = ['acc'] model.compile(optimizer, loss, metrics=metrics, cloning=cloning) batch_size = 8 if isinstance(distribution, mirrored_strategy.MirroredStrategy): # MirroredStrategy uses global batch size. batch_size = 8 * distribution.num_replicas_in_sync inputs = np.ones((10, 1), dtype=np.float32) targets = np.ones((10, 1), dtype=np.float32) dataset = dataset_ops.Dataset.from_tensor_slices((inputs, targets)) dataset = dataset.repeat().batch(batch_size) hist = model.fit(dataset, epochs=1, steps_per_epoch=20, verbose=1) self.assertAlmostEqual(hist.history['acc'][0], 0, 0) with distribution.scope(): model.set_weights(initial_weights) # TODO(psv/anjalisridhar): Enable these lines after we fix b/117431185. # evaluate_output = model.evaluate(dataset, steps=20) # self.assertAlmostEqual(evaluate_output[1], 1, 0) inputs = np.ones((10, 1), dtype=np.float32) predict_dataset = dataset_ops.Dataset.from_tensor_slices(inputs) predict_dataset = predict_dataset.repeat().batch(batch_size) output = model.predict(predict_dataset, steps=10) # `predict` runs for 10 steps ref_output = np.ones((160, 1), dtype=np.float32) self.assertArrayNear(output, ref_output, 1e-1) @combinations.generate(all_strategy_combinations_plus_cloning()) def testOptimizerWithCallbacks(self, distribution, cloning): with self.cached_session(): with distribution.scope(): model = get_model() optimizer = gradient_descent_keras.SGD(0.01) loss = 'mse' model.compile(optimizer, loss, cloning=cloning) dataset = get_dataset(distribution) def schedule(_): return 0.001 model.fit(dataset, epochs=1, steps_per_epoch=2, verbose=0, callbacks=[keras.callbacks.LearningRateScheduler(schedule)]) self.assertAllClose(0.001, keras.backend.get_value(model.optimizer.lr)) @combinations.generate( combinations.times(tpu_strategy_combinations_graph_only(), combinations.combine(batch_size=[4, 6]))) def test_evaluate_with_dataset_with_partial_batch(self, distribution, batch_size): with self.cached_session(): optimizer = gradient_descent.GradientDescentOptimizer(0.001) loss = 'mse' metrics = ['mae', keras.metrics.CategoricalAccuracy()] with distribution.scope(): model_with_ds_strategy = get_model() model_with_ds_strategy.compile(optimizer, loss, metrics=metrics) cpu_model = get_model() cpu_model.compile(optimizer, loss, metrics=metrics) x = np.random.random((10, 3)).astype('float32') y = np.random.random((10, 4)).astype('float32') dataset = dataset_ops.Dataset.from_tensor_slices((x, y)) # As sample size is 10, we make the last batch a partial batch. cpu_model.set_weights(model_with_ds_strategy.get_weights()) dataset_with_partial_batch = dataset.batch(batch_size) # We don't compare the loss as loss is currently not computed as metric # in Keras, the loss value is inaccurate for last partial batch due to # more weights for the last batch samples. steps = np.ceil(10.0 / batch_size) self.assertAllClose( model_with_ds_strategy.evaluate( dataset_with_partial_batch, steps=steps)[1:], cpu_model.evaluate(dataset_with_partial_batch, steps=steps)[1:], atol=1e-5, rtol=1e-5) self.assertAllClose( model_with_ds_strategy.evaluate(dataset_with_partial_batch)[1:], cpu_model.evaluate(dataset_with_partial_batch)[1:], atol=1e-5, rtol=1e-5) @combinations.generate( combinations.times(tpu_strategy_combinations_graph_only(), combinations.combine(cloning=[True, False]))) def test_predict_with_dataset_with_partial_batch(self, distribution, cloning): with self.cached_session(): optimizer = gradient_descent.GradientDescentOptimizer(0.001) loss = 'mse' with distribution.scope(): model_with_ds_strategy = get_model() model_with_ds_strategy.compile(optimizer, loss, cloning=cloning) cpu_model = get_model() cpu_model.compile(optimizer, loss) inputs = np.random.random((10, 3)).astype(np.float32) dataset = dataset_ops.Dataset.from_tensor_slices((inputs)) # As sample size is 10, we batch by 4 so that the last batch is # a partial batch. dataset_with_partial_batch = dataset.batch(4) cpu_model.set_weights(model_with_ds_strategy.get_weights()) self.assertAllClose( model_with_ds_strategy.predict(dataset_with_partial_batch, steps=3), cpu_model.predict(dataset_with_partial_batch, steps=3), atol=1e-5, rtol=1e-5) @combinations.generate( combinations.times(tpu_strategy_combinations_graph_only(), combinations.combine(cloning=[True, False]))) def test_predict_multi_output_model_with_dataset_with_partial_batch( self, distribution, cloning): with self.cached_session(): optimizer = gradient_descent.GradientDescentOptimizer(0.001) loss = 'mse' with distribution.scope(): model_with_ds_strategy = simple_multi_inputs_multi_outputs_model() model_with_ds_strategy.compile(optimizer, loss, cloning=cloning) cpu_model = simple_multi_inputs_multi_outputs_model() cpu_model.compile(optimizer, loss) input_data, _ = get_multi_inputs_multi_outputs_data() input_dict = { 'input_a': input_data['input_a'], 'input_b': input_data['input_b'], } dataset = dataset_ops.Dataset.from_tensor_slices(input_dict) # As sample size is 200, we batch by 18 using 12 steps per epoch so # that the last batch is a partial batch. dataset_with_partial_batch = dataset.batch(18) cpu_model.set_weights(model_with_ds_strategy.get_weights()) self.assertAllClose( model_with_ds_strategy.predict(dataset_with_partial_batch, steps=12), cpu_model.predict(dataset_with_partial_batch, steps=12), atol=1e-4, rtol=1e-4) @combinations.generate(all_strategy_combinations_minus_default()) def test_match_model_input_matches_with_dataset_tensors(self, distribution): def _create_model_input_output_tensors(): input_a = keras.layers.Input(shape=(16,), name='z_input_sorted_last') input_b = keras.layers.Input(shape=(32,), name='a_input_sorted_first') intermediate_a = keras.layers.Dense(10)(input_a) intermediate_b = keras.layers.Dense(10)(input_b) merged = keras.layers.Add()([intermediate_a, intermediate_b]) output = keras.layers.Dense(2)(merged) return input_a, input_b, output input_dict = { 'z_input_sorted_last': np.random.rand(32, 16).astype(np.float32), 'a_input_sorted_first': np.random.rand(32, 32).astype(np.float32) } target = np.ones((32, 2), dtype=np.float32) dataset = dataset_ops.Dataset.from_tensor_slices((input_dict, target)) dataset = dataset.batch(4, drop_remainder=True) with self.cached_session(): with distribution.scope(): input_a, input_b, output = _create_model_input_output_tensors() # `input_a`, which has input name that comes last in alphanumeric # order, is the first input of the model input layers. If tensors # from `input_dict` is blindly flattened and passed to model # inputs incorrectly, this would result in `input_a` input layer # matching with tensor `a_input_sorted_first` and would result in # shape mismatch. model_with_array_input = keras.models.Model( inputs=[input_a, input_b], outputs=output) model_with_array_input.compile('sgd', 'mse') model_weights = model_with_array_input.get_weights() model_with_array_input_fit = model_with_array_input.fit( dataset, steps_per_epoch=1, epochs=1).history input_a, input_b, output = _create_model_input_output_tensors() model_with_dict_input = keras.models.Model( inputs={ 'z_input_sorted_last': input_a, 'a_input_sorted_first': input_b, }, outputs=output) model_with_dict_input.compile('sgd', 'mse') model_with_dict_input.set_weights(model_weights) model_with_dict_input_fit = model_with_dict_input.fit( dataset, steps_per_epoch=1, epochs=1).history self.assertAllClose( model_with_dict_input_fit, model_with_array_input_fit, atol=1e-4, rtol=1e-4) @combinations.generate( combinations.combine(distribution=strategies_minus_tpu, mode=['graph', 'eager'])) def test_dataset_with_sample_weights(self, distribution): with self.cached_session(), distribution.scope(): model = get_sample_weights_model() optimizer = rmsprop.RMSPropOptimizer(learning_rate=0.001) loss = 'mse' model.compile(optimizer, loss) inputs = np.array([[0], [1], [2], [3]], np.float32) targets = np.array([[2], [4], [6], [8]], np.float32) sample_weights = np.array([0.25, 0.5, 0.75, 1], np.float32) ds = dataset_ops.Dataset.from_tensor_slices((inputs, targets, sample_weights)).batch(2) result = model.evaluate(ds, verbose=1) # The per sample loss is multipled by the corresponding sample weight. The # average of these weighted losses is the return value of the `evaluate` # call. For example, in the test above the average weighted loss is # calculated in the following manner: # batch_1 = (((2-0)^2) * 0.25 + ((4-1)^2) * 0.5) / 2 = 5.5 / 2 = 2.75 # batch_2 = (((6-2)^2 * 0.75) + ((8-3)^2 * 1)) / 2 = 37 / 2 = 18.5 # final result = (batch_1 + batch_2) / 2 = 10.625. # The first time we divide by number of input samples and the second time # we divide by number of steps/batches that the loss is aggregated over. self.assertAllClose(result, 10.625) # We now test without passing sample_weights: # batch_1 = ((2-0)^2) + ((4-1)^2) / 2 = 13 / 2 = 6.5 # batch_2 = ((6-2)^2) + ((8-3)^2) / 2 = 41 / 2 = 20.5 # final result = (batch_1 + batch_2) / 2 = 27 / 2 = 13.5 ds = dataset_ops.Dataset.from_tensor_slices((inputs, targets)).batch(2) result = model.evaluate(ds, verbose=1) self.assertAllClose(result, 13.5) @combinations.generate( combinations.combine(distribution=strategies_minus_default_minus_tpu, mode=['eager'])) def test_dataset_with_sample_weights_eager_with_cloning(self, distribution): with self.cached_session(), distribution.scope(): model = get_sample_weights_model() optimizer = rmsprop.RMSPropOptimizer(learning_rate=0.001) loss = 'mse' model.compile(optimizer, loss, cloning=True) inputs = np.array([[0], [1], [2], [3]], np.float32) targets = np.array([[2], [4], [6], [8]], np.float32) sample_weights = np.array([0.25, 0.5, 0.75, 1], np.float32) ds = dataset_ops.Dataset.from_tensor_slices((inputs, targets, sample_weights)).batch(2) with self.assertRaisesRegexp(NotImplementedError, '`sample_weight` is not supported when ' 'using tf.distribute.Strategy in '): model.evaluate(ds, verbose=1) class TestRegularizerLoss(test.TestCase, parameterized.TestCase): class IdentityRegularizer(keras.regularizers.Regularizer): def __call__(self, x): return array_ops.identity(x) class AddLayer(keras.layers.Layer): def build(self, _): self.v = self.add_weight( 'v', (), initializer='ones', regularizer=TestRegularizerLoss.IdentityRegularizer()) def call(self, inputs): return inputs + self.v @staticmethod def loss_fn(_, y_pred): return math_ops.reduce_mean(y_pred) @combinations.generate( combinations.times( strategy_combinations.all_strategy_combinations_minus_default(), combinations.combine(cloning=[True, False]))) def test_regularizer_loss(self, distribution, cloning): batch_size = 2 if not distributed_training_utils.global_batch_size_supported(distribution): batch_size //= distribution.num_replicas_in_sync # Given an input x, which is always 1, and variable v, this model computes # Loss=x+v+regularizer_loss, where regularizer_loss=v and the variable is # initialized to 1. Therefore, this model computes Loss=1+2v, and so the # gradient dLoss/dv = 2. This gradient of 2 is averaged over all examples # in a batch and then multiplied by the learning rate of 1. As a result, # the model update for one batch should subtract 2 from v, resulting in v # being -1. If the regularizer loss is not scaled correctly by number of # replicas, the variable value will be incorrect when number of replicas # >1. For e.g. it will be -2 if num replicas = 2. with distribution.scope(): x = keras.layers.Input(shape=(1,), batch_size=batch_size) y = TestRegularizerLoss.AddLayer()(x) model = keras.models.Model(inputs=x, outputs=y) opt = gradient_descent_keras.SGD(1.) model.compile(opt, loss=TestRegularizerLoss.loss_fn, cloning=cloning) model.fit( x=np.array([[1.], [1.]], dtype=np.float32), y=np.array([[1.], [1.]], dtype=np.float32), batch_size=batch_size) v = model.get_weights()[0] self.assertEqual(-1.0, v) class TestDistributionStrategyWithKerasModels(test.TestCase, parameterized.TestCase): @combinations.generate(all_strategy_combinations_plus_cloning()) def test_distribution_strategy_on_sequential_model(self, distribution, cloning): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( rmsprop.RMSPropOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(learning_rate=0.001) model = simple_sequential_model() loss = 'mse' model.compile(optimizer, loss, cloning=cloning) inputs = np.zeros((20, 10), np.float32) targets = np.zeros((20, 2), np.float32) model.fit(inputs, targets, epochs=1, steps_per_epoch=2) model.predict(inputs, steps=1) model.evaluate(inputs, targets, steps=1) @combinations.generate(all_strategy_combinations_plus_cloning()) def test_distribution_strategy_on_functional_model(self, distribution, cloning): with distribution.scope(): # TODO(b/130808953): Re-enable the V1 optimizer after iterations is # mirrored. optimizer_fn = ( rmsprop.RMSPropOptimizer if cloning else gradient_descent_keras.SGD) optimizer = optimizer_fn(learning_rate=0.001) model = get_model() loss = 'mse' model.compile(optimizer, loss, cloning=cloning) inputs = np.zeros((64, 3), dtype=np.float32) targets = np.zeros((64, 4), dtype=np.float32) model.fit(inputs, targets, epochs=1, steps_per_epoch=2) model.predict(inputs, steps=1) model.evaluate(inputs, targets, steps=1) @combinations.generate( combinations.times( all_strategy_minus_default_and_tpu_combinations() + tpu_strategy_combinations(), combinations.combine(cloning=[True, False]))) def test_distribution_strategy_one_dimensional(self, distribution, cloning): with distribution.scope(): inp = keras.layers.Input(shape=(10,)) out = keras.layers.Dense(3, activation='softmax')(inp) model = keras.Model(inputs=[inp], outputs=[out]) model.compile( optimizer='rmsprop', loss='sparse_categorical_crossentropy', metrics=['sparse_categorical_accuracy'], cloning=cloning) x = np.random.random((64, 10)).astype('float32') y = np.random.randint(3, size=64) model.fit(x, y, epochs=1, steps_per_epoch=2) @combinations.generate( combinations.combine( distribution=[ strategy_combinations.mirrored_strategy_with_gpu_and_cpu, strategy_combinations.mirrored_strategy_with_two_gpus ], mode=['graph', 'eager'], cloning=[True, False], reduction=[ loss_reduction.ReductionV2.SUM_OVER_BATCH_SIZE, loss_reduction.ReductionV2.SUM ])) def test_distribution_strategy_with_loss_reduction_types( self, distribution, cloning, reduction): np.random.seed(_RANDOM_SEED) def _get_model(): inputs = keras.Input((10,)) x1 = keras.layers.Dense(10, kernel_initializer='zeros')(inputs) x2 = keras.layers.Dense(10, kernel_initializer='zeros')(x1) outputs = keras.layers.Dense(1, kernel_initializer='zeros')(x2) model = keras.Model(inputs, outputs) return model x = np.random.random((64, 10)) y = np.random.random((64, 1)) dataset = dataset_ops.Dataset.from_tensor_slices((x, y)) dataset = dataset.batch(32) model = _get_model() model.compile( 'sgd', loss=keras.losses.MeanSquaredError(reduction=reduction)) history = model.fit(dataset, steps_per_epoch=2, epochs=1, shuffle=False) with distribution.scope(): ds_model = _get_model() ds_model.compile( 'sgd', loss=keras.losses.MeanSquaredError(reduction=reduction), cloning=cloning) ds_history = ds_model.fit( dataset, steps_per_epoch=2, epochs=1, shuffle=False) self.assertArrayNear(history.history['loss'], ds_history.history['loss'], 1e-5) @combinations.generate( combinations.times(all_strategy_minus_default_and_tpu_combinations(), combinations.combine(cloning=[True, False]))) def test_distribution_strategy_with_symbolic_add_loss(self, distribution, cloning): def _make_model_with_add_loss(): inputs = keras.Input((10,)) x1 = keras.layers.Dense(10, kernel_initializer='zeros')(inputs) x2 = keras.layers.Dense(10, kernel_initializer='zeros')(x1) outputs = keras.layers.Dense(1, kernel_initializer='zeros')(x2) model = keras.Model(inputs, outputs) model.add_loss(math_ops.reduce_mean(x1)) model.add_loss(math_ops.reduce_mean(outputs)) return model x = np.ones((64, 10)).astype('float32') model = _make_model_with_add_loss() model.compile('sgd') history = model.fit(x, steps_per_epoch=2, epochs=1) with distribution.scope(): ds_model = _make_model_with_add_loss() ds_model.compile('sgd', cloning=cloning) ds_history = ds_model.fit(x, steps_per_epoch=2, epochs=1) self.assertAllClose(history.history, ds_history.history) # TODO(omalleyt): Investigate flakiness and re-enable. @combinations.generate(all_strategy_minus_default_and_tpu_combinations()) def DISABLED_test_distribution_strategy_with_callable_add_loss( self, distribution): def _make_model(): inputs = keras.Input((10,)) x1 = keras.layers.Dense(10, kernel_initializer='zeros')(inputs) x2 = keras.layers.Dense(10, kernel_initializer='zeros')(x1) d = keras.layers.Dense(1, kernel_initializer='zeros') outputs = d(x2) model = keras.Model(inputs, outputs) model.add_loss(lambda: 100. * math_ops.reduce_mean(d.kernel)) return model x = np.ones((64, 10)).astype('float32') y = np.ones((64, 1)).astype('float32') model = _make_model() self.assertLen(model.losses, 1) model.compile('sgd', 'mse') history = model.fit(x, y, steps_per_epoch=2, epochs=1) with distribution.scope(): ds_model = _make_model() self.assertLen(ds_model.losses, 1) ds_model.compile('sgd', 'mse') ds_history = ds_model.fit(x, y, steps_per_epoch=2, epochs=1) self.assertAllClose(history.history, ds_history.history) @combinations.generate( combinations.times(all_strategy_minus_default_and_tpu_combinations(), combinations.combine(cloning=[True, False]))) def test_distribution_strategy_with_add_metric_in_call( self, distribution, cloning): class Bias(keras.layers.Layer): def build(self, input_shape): self.bias = self.add_weight(name='bias', initializer='zeros', shape=()) def call(self, inputs): self.add_metric( math_ops.reduce_mean(inputs), name='bias', aggregation='mean') return inputs + self.bias def _make_model_with_add_metric(): inputs = keras.Input((10,)) x1 = keras.layers.Dense(10, kernel_initializer='zeros')(inputs) x2 = Bias()(x1) outputs = keras.layers.Dense(1, kernel_initializer='zeros')(x2) model = keras.Model(inputs, outputs) return model x = np.ones((64, 10)).astype('float32') y = np.ones((64, 1)).astype('float32') model = _make_model_with_add_metric() self.assertLen(model.metrics, 1) model.compile('sgd', 'mse') history = model.fit( x, y, steps_per_epoch=2, validation_data=(x, y), validation_steps=2, epochs=2) with distribution.scope(): ds_model = _make_model_with_add_metric() self.assertLen(ds_model.metrics, 1) ds_model.compile('sgd', 'mse', cloning=cloning) ds_history = ds_model.fit( x, y, steps_per_epoch=2, validation_data=(x, y), validation_steps=2, epochs=2) self.assertLen(ds_model.metrics, 1) self.assertAllClose(history.history, ds_history.history) @combinations.generate( combinations.combine( distribution=[ strategy_combinations.one_device_strategy, strategy_combinations.one_device_strategy_gpu, strategy_combinations.mirrored_strategy_with_gpu_and_cpu, strategy_combinations.mirrored_strategy_with_two_gpus, ], mode=['eager'], cloning=[False])) def test_distribution_strategy_with_add_metric_object(self, distribution, cloning): class Bias(keras.layers.Layer): def build(self, input_shape): self.bias = self.add_weight(name='bias', initializer='zeros', shape=()) self.mean = keras.metrics.Mean(name='mean') def call(self, inputs): self.add_metric(self.mean(inputs)) return inputs + self.bias def _make_model_with_add_metric_object(): inputs = keras.Input((10,)) x1 = keras.layers.Dense(10, kernel_initializer='zeros')(inputs) x2 = Bias()(x1) outputs = keras.layers.Dense(1, kernel_initializer='zeros')(x2) model = keras.Model(inputs, outputs) return model x = np.ones((64, 10)).astype('float32') y = np.ones((64, 1)).astype('float32') model = _make_model_with_add_metric_object() self.assertLen(model.metrics, 1) model.compile('sgd', 'mse') history = model.fit( x, y, steps_per_epoch=2, validation_data=(x, y), validation_steps=2, epochs=2) with distribution.scope(): ds_model = _make_model_with_add_metric_object() self.assertLen(ds_model.metrics, 1) ds_model.compile('sgd', 'mse', cloning=cloning) ds_history = ds_model.fit( x, y, steps_per_epoch=2, validation_data=(x, y), validation_steps=2, epochs=2) self.assertLen(ds_model.metrics, 1) self.assertAllClose(history.history, ds_history.history) @combinations.generate( combinations.times(all_strategy_minus_default_and_tpu_combinations(), combinations.combine(cloning=[True, False]))) def test_distribution_strategy_with_add_metric_outside_call( self, distribution, cloning): def _make_model_with_add_metric(): inputs = keras.Input((10,)) x1 = keras.layers.Dense(10, kernel_initializer='zeros')(inputs) outputs = keras.layers.Dense(1, kernel_initializer='zeros')(x1) model = keras.Model(inputs, outputs) model.add_metric( math_ops.reduce_mean(x1), name='mid_mean', aggregation='mean') return model x = np.ones((64, 10)).astype('float32') y = np.ones((64, 1)).astype('float32') model = _make_model_with_add_metric() self.assertLen(model.metrics, 1) model.compile('sgd', 'mse') history = model.fit( x, y, steps_per_epoch=2, validation_data=(x, y), validation_steps=2, epochs=2) with distribution.scope(): ds_model = _make_model_with_add_metric() self.assertLen(ds_model.metrics, 1) ds_model.compile('sgd', 'mse', cloning=cloning) ds_history = ds_model.fit( x, y, steps_per_epoch=2, validation_data=(x, y), validation_steps=2, epochs=2) self.assertLen(ds_model.metrics, 1) self.assertAllClose(history.history, ds_history.history) if __name__ == '__main__': test.main()

""" Module for producing the Project Summary Report Note: Much of this code was written by Pontus and lifted from the SciLifeLab repo """ from collections import defaultdict, OrderedDict import os from string import ascii_uppercase as alphabets import ngi_reports.reports class Report(ngi_reports.reports.BaseReport): ## initialize class and assign basic variables def __init__(self, LOG, working_dir, **kwargs): # Initialise the parent class super(Report, self).__init__(LOG, working_dir, **kwargs) # general initialization self.tables_info = defaultdict(dict) self.report_info = {} # report name and directory to be created self.report_dir = os.path.join(working_dir, 'reports') self.report_basename = '' self.signature = kwargs.get('signature') def generate_report_template(self, proj, template, support_email): ## Check and exit if signature not provided if not self.signature: self.LOG.error('It is required to provide Signature/Name while generating \'project_summary\' report, see -s opition in help') raise SystemExit else: self.report_info['signature'] = self.signature ## Helper vars seq_methods = OrderedDict() ## Get information for the report self.report_basename = proj.ngi_name self.report_info['support_email'] = support_email self.report_info['dates'] = self.get_order_dates(proj.dates) self.report_info['report_date'] = self.creation_date self.report_info['accredit'] = self.get_accredit_info(proj.accredited, proj.library_construction, proj.ngi_name) ## Get sequecing method for the flowcell seq_template = '{}) Samples were sequenced on {} ({}) with a {} setup '\ 'using {}. The Bcl to FastQ conversion was performed using {} from the CASAVA software '\ 'suite. The quality scale used is Sanger / phred33 / Illumina 1.8+.' ## Collect required information for all flowcell run for the project for fc in proj.flowcells.values(): ## Sort by the order of readss run_setup = sorted(fc.run_setup, key=lambda k: k['Number']) run_setup_text = '' read_count = 0 index_count = 0 for read in run_setup: run_setup_text += read['NumCycles'] run_setup_text += 'nt' if read['IsIndexedRead'] == 'N': read_count += 1 run_setup_text += '(Read' run_setup_text += str(read_count) elif read['IsIndexedRead'] == 'Y': index_count += 1 run_setup_text += '(Index' run_setup_text += str(index_count) if run_setup.index(read) == len(run_setup)-1: run_setup_text += ')' else: run_setup_text += ')-' if fc.type == 'NovaSeq6000': fc_chem = '\'{}\' workflow in \'{}\' mode flowcell'.format(fc.chemistry.get('WorkflowType'), fc.chemistry.get('FlowCellMode')) elif fc.type == 'NextSeq500': fc_chem = '\'{}-Output\' chemistry'.format(fc.chemistry.get('Chemistry')) elif fc.type == 'NextSeq2000': fc_chem = '\'{}\' flowcell'.format(fc.chemistry.get('Chemistry')) else: fc_chem = '\'{}\' chemistry'.format(fc.chemistry.get('Chemistry')) applicationName = 'MSC' if fc.type == "MiSeq" else fc.seq_software.get('ApplicationName') seq_software = "{} {}/RTA {}".format(applicationName, fc.seq_software.get('ApplicationVersion'), fc.seq_software.get('RTAVersion')) tmp_method = seq_template.format('SECTION', fc.type, seq_software, run_setup_text, fc_chem, fc.casava) ## to make sure the sequencing methods are unique if tmp_method not in list(seq_methods.keys()): seq_methods[tmp_method] = alphabets[len(list(seq_methods.keys()))] fc.seq_meth = seq_methods[tmp_method] ## give proper section name for the methods self.report_info['sequencing_methods'] = "\n\n".join([m.replace('SECTION',seq_methods[m]) for m in seq_methods]) ## Check if sequencing info is complete if not self.report_info['sequencing_methods']: self.LOG.warn('Sequencing methods may have some missing information, kindly check your inputs.') ############################################################################### ##### Create table text and header explanation from collected information ##### ############################################################################### ## sample_info table unit_magnitude = {'#reads' : '', 'Kreads': ' Thousand','Mreads': ' Million'} sample_header = ['NGI ID', 'User ID', proj.samples_unit, '≥Q30'] sample_filter = ['ngi_id', 'customer_name', 'total_reads', 'qscore'] self.tables_info['tables']['sample_info'] = self.create_table_text(proj.samples.values(), filter_keys=sample_filter, header=sample_header) self.tables_info['header_explanation']['sample_info'] = '* _NGI ID:_ Internal NGI sample identifier\n'\ '* _User ID:_ Sample name submitted by user\n'\ '* _{}:_ Total{} reads (or pairs) for a sample\n'\ '* _≥Q30:_ Aggregated percentage of bases that have a quality score ≥ Q30'\ .format(proj.samples_unit, unit_magnitude[proj.samples_unit]) ## library_info table library_header = ['NGI ID', 'Index', 'Lib Prep', 'Avg. FS', 'Lib QC'] library_filter = ['ngi_id', 'barcode', 'label', 'avg_size', 'qc_status'] library_list = [] for s, v in list(proj.samples.items()): for p in list(v.preps.values()): p = vars(p) p['ngi_id'] = s library_list.append(p) self.tables_info['tables']['library_info'] = self.create_table_text(sorted(library_list, key=lambda d: d['ngi_id']), filter_keys=library_filter, header=library_header) self.tables_info['header_explanation']['library_info'] = '* _NGI ID:_ Internal NGI sample identifier\n'\ '* _Index:_ Barcode sequence used for the sample\n'\ '* _Lib. Prep:_ NGI library identifier. The first library prep will be marked "A", the second "B" and so on.\n'\ '* _Avg. FS:_ Average fragment size of the library\n'\ '* _Lib. QC:_ Library quality control status\n' ## lanes_info table lanes_header = ['Date', 'FC id', 'Lane', 'Cluster(M)', 'Phix', '≥Q30(%)', 'Method'] lanes_filter = ['date', 'name', 'id', 'cluster', 'phix', 'avg_qval', 'seq_meth'] lanes_list = [] for f, v in list(proj.flowcells.items()): for l in list(v.lanes.values()): l = vars(l) l['date'] = v.date l['name'] = v.name l['seq_meth'] = v.seq_meth lanes_list.append(l) self.tables_info['tables']['lanes_info'] = self.create_table_text(sorted(lanes_list, key=lambda d: '{}_{}'.format(d['date'],d['id'])), filter_keys=lanes_filter, header=lanes_header) self.tables_info['header_explanation']['lanes_info'] = '* _Date:_ Date of sequencing\n'\ '* _Flowcell:_ Flowcell identifier\n'\ '* _Lane:_ Flowcell lane number\n'\ '* _Clusters:_ Number of clusters that passed the read filters (millions)\n'\ '* _≥Q30:_ Aggregated percentage of bases that have a quality score ≥ Q30\n'\ '* _PhiX:_ Average PhiX error rate for the lane\n'\ '* _Method:_ Sequencing method used. See description under Sequencing heading above.\n' # Make the file basename output_bn = os.path.realpath(os.path.join(self.working_dir, self.report_dir, '{}_project_summary'.format(self.report_basename))) # Parse the template try: md = template.render(project=proj, tables=self.tables_info['header_explanation'], report_info=self.report_info) return {output_bn: md} except: self.LOG.error('Could not parse the project_summary template') raise ##################################################### ##### Helper methods to get certain information ##### ##################################################### def create_table_text(self, ip, filter_keys=None, header=None, sep='\t'): """ Create a single text string that will be saved in a file in TABLE format from given dict and filtered based upon mentioned header. :param dict/list ip: Input dictionary/list to be convertead as table string :param list filter: A list of keys that will be used to filter the ip_dict :param list header: A list that will be used as header :param str sep: A string that will be used as separator """ op_string = [] if isinstance(ip, dict): ip = list(ip.values()) if header: op_string.append(sep.join(header)) if not filter_keys: filter_keys = [] for i in ip: filter_keys.extend(list(i.keys())) filter_keys = sorted(list(set(filter_keys))) for i in ip: row = [] for k in filter_keys: if type(i) is dict: row.append(i.get(k,'NA')) else: row.append(getattr(i, k, 'NA')) row = list(map(str, row)) op_string.append(sep.join(row)) return '\n'.join(op_string) def get_order_dates(self, project_dates): """ Get order dates as a markdown string. Ignore if unavailable """ dates = [] for item in project_dates: if project_dates.get(item): dates.append('_{}:_ {}'.format(item.replace('_', ' ').capitalize(), project_dates[item])) return ', '.join(dates) def get_accredit_info(self, accredit_dict, library_construction, proj_name): """Get swedac accreditation info for given step 'k' :param Project proj: Project object containing details of the relevant project """ accredit_info = {} for key in accredit_dict: accredit = accredit_dict[key] ## For "finished library" projects, set certain accredation steps as "NA" even if not set by default if key in ['library_preparation','data_analysis'] and library_construction == 'Library was prepared by user.': accredit_info[key] = 'Not Applicable' elif accredit in ['Yes','No']: accredit_info[key] = '{} under ISO/IEC 17025'.format(['[cross] Not accredited','[tick] Accredited'][accredit == 'Yes']) elif accredit == 'N/A': accredit_info[key] = 'Not Applicable' else: self.LOG.error('Accreditation step {} for project {} is found, but no value is set'.format(key, proj_name)) return accredit_info # Generate CSV files for the tables def create_txt_files(self, op_dir=None): """ Generate the CSV files for mentioned tables i.e. a dictionary with table name as key, which will be used as file name and the content of file in single string as value to put in the TXT file :param str op_dir: Path where the TXT files should be created, current dir is default """ for tb_nm, tb_cont in list(self.tables_info['tables'].items()): op_fl = '{}_{}.txt'.format(self.report_basename, tb_nm) if op_dir: op_fl = os.path.join(op_dir, op_fl) with open(op_fl, 'w') as TXT: TXT.write(tb_cont)

"""Wordcount exercise Google's Python class The main() below is already defined and complete. It calls print_words() and print_top() functions which you write. 1. For the --count flag, implement a print_words(filename) function that counts how often each word appears in the text and prints: word1 count1 word2 count2 ... Print the above list in order sorted by word (python will sort punctuation to come before letters -- that's fine). Store all the words as lowercase, so 'The' and 'the' count as the same word. 2. For the --topcount flag, implement a print_top(filename) which is similar to print_words() but which prints just the top 20 most common words sorted so the most common word is first, then the next most common, and so on. Use str.split() (no arguments) to split on all whitespace. Workflow: don't build the whole program at once. Get it to an intermediate milestone and print your data structure and sys.exit(0). When that's working, try for the next milestone. Optional: define a helper function to avoid code duplication inside print_words() and print_top(). """ import sys # +++your code here+++ # Define print_words(filename) and print_top(filename) functions. # You could write a helper utility function that reads a file # and builds and returns a word/count dict for it. # Then print_words() and print_top() can just call the utility function. def build_dict(file_name): dict = {} f = open(file_name, 'rU') for line in f: list = line.split() for word in list: if word.lower() in dict: dict[word.lower()] = dict[word.lower()] + 1 else: dict[word.lower()] = 1 f.close() return dict def print_words(file_name): dict = build_dict(file_name) for k, v in sorted(dict.items()): print k, ' ', v def get_count(word_count_tuple): return word_count_tuple[1] def print_top(file_name): dict = build_dict(file_name) sortedlist = sorted(dict.items(), key=get_count, reverse=True) for k, v in sortedlist[:20]: print k, ' ', v ### # This basic command line argument parsing code is provided and # calls the print_words() and print_top() functions which you must define. def main(): if len(sys.argv) != 3: print 'usage: ./wordcount.py {--count | --topcount} file' sys.exit(1) option = sys.argv[1] filename = sys.argv[2] if option == '--count': print_words(filename) elif option == '--topcount': print_top(filename) else: print 'unknown option: ' + option sys.exit(1) if __name__ == '__main__': main()

from preggy import expect from tests.base import FilterTestCase class QualityFilterTestCase(FilterTestCase): def test_quality_filter(self): image = self.get_filtered('source.jpg', 'thumbor.filters.quality', 'quality(10)') expected = self.get_fixture('quality-10%.jpg') expect(self.context.request.quality).to_equal(10) ssim = self.get_ssim(image, expected) expect(ssim).to_be_greater_than(0.99)

'''@file multi_target_dummy_processor.py contains the MultiTargetDummyProcessor class''' import os import subprocess import StringIO import scipy.io.wavfile as wav import numpy as np import processor from nabu.processing.feature_computers import feature_computer_factory import pdb class MultiTargetDummyProcessor(processor.Processor): '''a processor for audio files, this will compute the multiple targets''' def __init__(self, conf, segment_lengths): '''MultiTargetDummyProcessor constructor Args: conf: MultiTargetDummyProcessor configuration as a dict of strings segment_lengths: A list containing the desired lengths of segments. Possibly multiple segment lengths''' #create the feature computer self.comp = feature_computer_factory.factory(conf['feature'])(conf) #set the length of the segments. Possibly multiple segment lengths self.segment_lengths = segment_lengths #initialize the metadata self.nrS = int(conf['nrs']) self.target_dim = self.comp.get_dim() self.nontime_dims=[self.target_dim,self.nrS] super(MultiTargetDummyProcessor, self).__init__(conf) def __call__(self, dataline): '''process the data in dataline Args: dataline: either a path to a wav file or a command to read and pipe an audio file Returns: segmented_data: The segmented targets as a list of numpy arrays per segment length utt_info: some info on the utterance''' utt_info= dict() targets = None for ind in range(self.nrS): #read the wav file rate, utt = _read_wav(dataline) #compute the features features = self.comp(utt, rate) features = np.expand_dims(features, 2) if targets is None: targets = features else: targets = np.append(targets,features,2) # split the data for all desired segment lengths segmented_data = self.segment_data(targets) return segmented_data, utt_info def write_metadata(self, datadir): '''write the processor metadata to disk Args: dir: the directory where the metadata should be written''' for i,seg_length in enumerate(self.segment_lengths): seg_dir = os.path.join(datadir,seg_length) with open(os.path.join(seg_dir, 'nrS'), 'w') as fid: fid.write(str(self.nrS)) with open(os.path.join(seg_dir, 'dim'), 'w') as fid: fid.write(str(self.target_dim)) with open(os.path.join(seg_dir, 'nontime_dims'), 'w') as fid: fid.write(str(self.nontime_dims)[1:-1]) def _read_wav(wavfile): ''' read a wav file Args: wavfile: either a path to a wav file or a command to read and pipe an audio file Returns: - the sampling rate - the utterance as a numpy array ''' if os.path.exists(wavfile): #its a file (rate, utterance) = wav.read(wavfile) elif wavfile[-1] == '|': #its a command #read the audio file pid = subprocess.Popen(wavfile + ' tee', shell=True, stdout=subprocess.PIPE) output, _ = pid.communicate() output_buffer = StringIO.StringIO(output) (rate, utterance) = wav.read(output_buffer) else: #its a segment of an utterance split = wavfile.split(' ') begin = float(split[-2]) end = float(split[-1]) unsegmented = ' '.join(split[:-2]) rate, full_utterance = _read_wav(unsegmented) utterance = full_utterance[int(begin*rate):int(end*rate)] return rate, utterance

import datetime from south.db import db from south.v2 import SchemaMigration from django.db import models class Migration(SchemaMigration): def forwards(self, orm): # Adding field 'Observation.send' db.add_column('notification_observation', 'send', self.gf('django.db.models.fields.BooleanField')(default=True), keep_default=False) def backwards(self, orm): # Deleting field 'Observation.send' db.delete_column('notification_observation', 'send') models = { 'auth.group': { 'Meta': {'object_name': 'Group'}, 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}), 'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': "orm['auth.Permission']", 'symmetrical': 'False', 'blank': 'True'}) }, 'auth.permission': { 'Meta': {'ordering': "('content_type__app_label', 'content_type__model', 'codename')", 'unique_together': "(('content_type', 'codename'),)", 'object_name': 'Permission'}, 'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}), 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['contenttypes.ContentType']"}), 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'}) }, 'auth.user': { 'Meta': {'object_name': 'User'}, 'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}), 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}), 'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}), 'groups': ('django.db.models.fields.related.ManyToManyField', [], {'to': "orm['auth.Group']", 'symmetrical': 'False', 'blank': 'True'}), 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}), 'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}), 'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}), 'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}), 'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}), 'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}), 'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': "orm['auth.Permission']", 'symmetrical': 'False', 'blank': 'True'}), 'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'}) }, 'contenttypes.contenttype': { 'Meta': {'ordering': "('name',)", 'unique_together': "(('app_label', 'model'),)", 'object_name': 'ContentType', 'db_table': "'django_content_type'"}, 'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}), 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}), 'name': ('django.db.models.fields.CharField', [], {'max_length': '100'}) }, 'notification.notice': { 'Meta': {'ordering': "['-added']", 'object_name': 'Notice'}, 'added': ('django.db.models.fields.DateTimeField', [], {}), 'archived': ('django.db.models.fields.BooleanField', [], {'default': 'False'}), 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['contenttypes.ContentType']"}), 'data': ('picklefield.fields.PickledObjectField', [], {}), 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'notice_type': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['notification.NoticeType']"}), 'object_id': ('django.db.models.fields.PositiveIntegerField', [], {}), 'recipient': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['auth.User']"}), 'unseen': ('django.db.models.fields.BooleanField', [], {'default': 'True'}) }, 'notification.noticesetting': { 'Meta': {'unique_together': "(('user', 'notice_type', 'medium'),)", 'object_name': 'NoticeSetting'}, 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'medium': ('django.db.models.fields.CharField', [], {'max_length': '1'}), 'notice_type': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['notification.NoticeType']"}), 'send': ('django.db.models.fields.BooleanField', [], {'default': 'False'}), 'user': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['auth.User']"}) }, 'notification.noticetype': { 'Meta': {'object_name': 'NoticeType'}, 'default': ('django.db.models.fields.IntegerField', [], {}), 'description': ('django.db.models.fields.CharField', [], {'max_length': '100'}), 'display': ('django.db.models.fields.CharField', [], {'max_length': '50'}), 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'label': ('django.db.models.fields.CharField', [], {'max_length': '40'}) }, 'notification.observation': { 'Meta': {'ordering': "['-added']", 'object_name': 'Observation'}, 'added': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}), 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['contenttypes.ContentType']"}), 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}), 'notice_type': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['notification.NoticeType']"}), 'object_id': ('django.db.models.fields.PositiveIntegerField', [], {}), 'send': ('django.db.models.fields.BooleanField', [], {'default': 'True'}), 'user': ('django.db.models.fields.related.ForeignKey', [], {'to': "orm['auth.User']"}) } } complete_apps = ['notification']

import pickle from django.conf import settings from django_redis.serializers.pickle import PickleSerializer from testil import eq def test_highest_protocol(): assert pickle.HIGHEST_PROTOCOL <= 5, """ The highest pickle procol supported by Python at time of writing this test is 5. Support for newer protocols must be added or the default version used by libraries such as django_redis must be limited to 5 or less so pickles written by a newer Python can be read by an older Python after a downgrade. """ def test_pickle_5(): eq(pickle.loads(b'\x80\x05\x89.'), False) def test_dump_and_load_all_protocols(): def test(protocol): eq(pickle.loads(pickle.dumps(False, protocol=protocol)), False) for protocol in range(1, pickle.HIGHEST_PROTOCOL + 1): yield test, protocol def test_django_redis_protocol(): # Override default pickle protocol to allow smoother Python upgrades. # Heroics like this will not be necessary once we have upgraded to a # version of django_redis that uses pickle.DEFAULT_PROTOCOL. See: # https://github.com/jazzband/django-redis/issues/547 # https://github.com/jazzband/django-redis/pull/555 # # This test may be removed after upgrading django_redis. # In the mean time, test for effective protocol override in settings.py pkl = PickleSerializer(settings.CACHES['default'].get("OPTIONS", {})) eq(pkl.dumps(False)[1], pickle.DEFAULT_PROTOCOL)

import os from setuptools import setup, find_packages long_description = open( os.path.join( os.path.dirname(__file__), 'README.rst' ) ).read() setup( name='prompt_toolkit', author='Jonathan Slenders', version='0.52', license='LICENSE.txt', url='https://github.com/jonathanslenders/python-prompt-toolkit', description='Library for building powerful interactive command lines in Python', long_description=long_description, packages=find_packages('.'), install_requires = [ 'pygments', 'six>=1.9.0', 'wcwidth', ], )

import os,uuid,sys import requests,subprocess,shutil from pprint import pprint from KBaseReport.KBaseReportClient import KBaseReport from biokbase.workspace.client import Workspace as workspaceService from ReadsUtils.ReadsUtilsClient import ReadsUtils #END_HEADER class kb_fastqc: ''' Module Name: kb_fastqc Module Description: A KBase module: kb_fastqc ''' ######## WARNING FOR GEVENT USERS ####### noqa # Since asynchronous IO can lead to methods - even the same method - # interrupting each other, you must be *very* careful when using global # state. A method could easily clobber the state set by another while # the latter method is running. ######################################### noqa VERSION = "1.0.1" GIT_URL = "https://github.com/rsutormin/kb_fastqc" GIT_COMMIT_HASH = "82f3adf025cccb35b247652439709a64a78ca74b" #BEGIN_CLASS_HEADER def _get_input_file_ref_from_params(self, params): if 'input_file_ref' in params: return params['input_file_ref'] else: if 'input_ws' not in params and 'input_file' not in params: raise ValueError('Either the "input_file_ref" field or the "input_ws" with' + '"input_file" fields must be set.') return str(params['input_ws']) + '/' + str(params['input_file']) #END_CLASS_HEADER # config contains contents of config file in a hash or None if it couldn't # be found def __init__(self, config): #BEGIN_CONSTRUCTOR self.workspaceURL = config['workspace-url'] self.scratch = os.path.abspath(config['scratch']) self.callback_url = os.environ['SDK_CALLBACK_URL'] #END_CONSTRUCTOR pass def runFastQC(self, ctx, input_params): """ :param input_params: instance of type "FastQCParams" -> structure: parameter "input_ws" of String, parameter "input_file" of String, parameter "input_file_ref" of String :returns: instance of type "FastQCOutput" -> structure: parameter "report_name" of String, parameter "report_ref" of String """ # ctx is the context object # return variables are: reported_output #BEGIN runFastQC token = ctx['token'] wsClient = workspaceService(self.workspaceURL, token=token) headers = {'Authorization': 'OAuth '+token} uuid_string = str(uuid.uuid4()) read_file_path=self.scratch+"/"+uuid_string os.mkdir(read_file_path) input_file_ref = self._get_input_file_ref_from_params(input_params) library=None try: library = wsClient.get_objects2({'objects': [{'ref': input_file_ref}]})['data'][0] except Exception as e: raise ValueError('Unable to get read library object from workspace: (' + input_file_ref + ')' + str(e)) download_read_params = {'read_libraries': [], 'interleaved':"false"} if("SingleEnd" in library['info'][2] or "PairedEnd" in library['info'][2]): download_read_params['read_libraries'].append(library['info'][7]+"/"+library['info'][1]) elif("SampleSet" in library['info'][2]): for sample_id in library['data']['sample_ids']: if("/" in sample_id): download_read_params['read_libraries'].append(sample_id) else: if(sample_id.isdigit()): download_read_params['read_libraries'].append(library['info'][6]+"/"+sample_id) else: download_read_params['read_libraries'].append(library['info'][7]+"/"+sample_id) ru = ReadsUtils(os.environ['SDK_CALLBACK_URL']) ret = ru.download_reads(download_read_params) read_file_list=list() for file in ret['files']: files = ret['files'][file]['files'] fwd_name=files['fwd'].split('/')[-1] fwd_name=fwd_name.replace('.gz','') shutil.move(files['fwd'],os.path.join(read_file_path, fwd_name)) read_file_list.append(os.path.join(read_file_path, fwd_name)) if(files['rev'] is not None): rev_name=files['rev'].split('/')[-1] rev_name=rev_name.replace('.gz','') shutil.move(files['rev'],os.path.join(read_file_path, rev_name)) read_file_list.append(os.path.join(read_file_path, rev_name)) subprocess.check_output(["fastqc"]+read_file_list) report = "Command run: "+" ".join(["fastqc"]+read_file_list) output_html_files = list() output_zip_files = list() first_file="" html_string = "" html_count = 0 with open('/kb/data/index_start.txt', 'r') as start_file: html_string=start_file.read() #Make HTML folder os.mkdir(os.path.join(read_file_path, 'html')) for file in os.listdir(read_file_path): label=".".join(file.split(".")[1:]) if(file.endswith(".zip")): output_zip_files.append({'path' : os.path.join(read_file_path,file), 'name' : file, 'label' : label, 'description' : 'Zip file generated by fastqc that contains ' + \ 'original images seen in the report'}) if(file.endswith(".html")): #Move html into html folder shutil.move(os.path.join(read_file_path,file),os.path.join(read_file_path,'html',file)) # file = os.path.join('html',file) if(first_file==""): first_file=file html_string+=" <button data-button=\"page "+str(html_count) + \ "\" data-page=\""+file+"\">Page "+str(html_count+1)+"</button>\n" html_count+=1 html_string+=" </div> </div> <div id=\"body\">\n <iframe id=\"content\" " + \ "style=\"width: 100%; border: none; \" src=\""+first_file+"\"></iframe>\n </div>" output_html_files.append({'path' : os.path.join(read_file_path,'html'), 'name' : 'html files', 'label' : 'html files', 'description' : 'HTML files generated by fastqc that ' + \ 'contains report on quality of reads'}) with open('/kb/data/index_end.txt', 'r') as end_file: html_string+=end_file.read() with open(os.path.join(read_file_path,'html',"index.html"),'w') as index_file: index_file.write(html_string) # output_html_files.append({'path' : read_file_path+"/index.html", # 'name' : "index.html", # 'label' : "index.html", # 'description' : 'HTML file generated by fastqc that contains report on quality of reads'}) report_params = { 'objects_created' : [], # 'message' : report, 'direct_html' : html_string, # 'direct_html_link_index' : 1, 'file_links' : output_zip_files, 'html_links' : output_html_files, 'workspace_name' : input_params['input_ws'], 'report_object_name' : 'kb_fastqc_report_' + uuid_string } kbase_report_client = KBaseReport(self.callback_url, token=token) output = kbase_report_client.create_extended_report(report_params) reported_output = { 'report_name': output['name'], 'report_ref': output['ref'] } #Remove temp reads directory shutil.rmtree(read_file_path, ignore_errors=True) #END runFastQC # At some point might do deeper type checking... if not isinstance(reported_output, dict): raise ValueError('Method runFastQC return value ' + 'reported_output is not type dict as required.') # return the results return [reported_output] def status(self, ctx): #BEGIN_STATUS returnVal = {'state': "OK", 'message': "", 'version': self.VERSION, 'git_url': self.GIT_URL, 'git_commit_hash': self.GIT_COMMIT_HASH} #END_STATUS return [returnVal]

from __future__ import unicode_literals from django.db import migrations, models class Migration(migrations.Migration): dependencies = [ ('icekit_events', '0014_eventbase_human_times'), ('fluent_contents', '0001_initial'), ] operations = [ migrations.CreateModel( name='TodaysOccurrences', fields=[ ('contentitem_ptr', models.OneToOneField(to='fluent_contents.ContentItem', primary_key=True, auto_created=True, parent_link=True, serialize=False)), ('include_finished', models.BooleanField(default=False, help_text=b'include occurrences that have already finished today')), ('types_to_show', models.ManyToManyField(blank=True, db_table=b'ik_todays_occurrences_types', to='icekit_events.EventType', help_text=b'Leave empty to show all events.')), ], options={ 'verbose_name': "Today's events", 'db_table': 'contentitem_ik_events_todays_occurrences_todaysoccurrences', }, bases=('fluent_contents.contentitem',), ), ]

"""Implementation of an S3-like storage server based on local files. Useful to test features that will eventually run on S3, or if you want to run something locally that was once running on S3. We don't support all the features of S3, but it does work with the standard S3 client for the most basic semantics. To use the standard S3 client with this module: c = S3.AWSAuthConnection("", "", server="localhost", port=8888, is_secure=False) c.create_bucket("mybucket") c.put("mybucket", "mykey", "a value") print c.get("mybucket", "mykey").body """ import bisect import datetime import hashlib import os import os.path import urllib from tornado import escape from tornado import httpserver from tornado import ioloop from tornado import web from tornado.util import unicode_type from tornado.options import options, define try: long except NameError: long = int define("port", default=9888, help="TCP port to listen on") define("root_directory", default="/tmp/s3", help="Root storage directory") define("bucket_depth", default=0, help="Bucket file system depth limit") def start(port, root_directory, bucket_depth): """Starts the mock S3 server on the given port at the given path.""" application = S3Application(root_directory, bucket_depth) http_server = httpserver.HTTPServer(application) http_server.listen(port) ioloop.IOLoop.current().start() class S3Application(web.Application): """Implementation of an S3-like storage server based on local files. If bucket depth is given, we break files up into multiple directories to prevent hitting file system limits for number of files in each directories. 1 means one level of directories, 2 means 2, etc. """ def __init__(self, root_directory, bucket_depth=0): web.Application.__init__(self, [ (r"/", RootHandler), (r"/([^/]+)/(.+)", ObjectHandler), (r"/([^/]+)/", BucketHandler), ]) self.directory = os.path.abspath(root_directory) if not os.path.exists(self.directory): os.makedirs(self.directory) self.bucket_depth = bucket_depth class BaseRequestHandler(web.RequestHandler): SUPPORTED_METHODS = ("PUT", "GET", "DELETE") def render_xml(self, value): assert isinstance(value, dict) and len(value) == 1 self.set_header("Content-Type", "application/xml; charset=UTF-8") name = list(value.keys())[0] parts = [] parts.append('<' + name + ' xmlns="http://doc.s3.amazonaws.com/2006-03-01">') self._render_parts(value[name], parts) parts.append('</' + name + '>') self.finish('<?xml version="1.0" encoding="UTF-8"?>\n' + ''.join(parts)) def _render_parts(self, value, parts=[]): if isinstance(value, (unicode_type, bytes)): parts.append(escape.xhtml_escape(value)) elif isinstance(value, (int, long)): parts.append(str(value)) elif isinstance(value, datetime.datetime): parts.append(value.strftime("%Y-%m-%dT%H:%M:%S.000Z")) elif isinstance(value, dict): for name, subvalue in value.items(): if not isinstance(subvalue, list): subvalue = [subvalue] for subsubvalue in subvalue: parts.append('<' + name + '>') self._render_parts(subsubvalue, parts) parts.append('</' + name + '>') else: raise Exception("Unknown S3 value type %r", value) def _object_path(self, bucket, object_name): if self.application.bucket_depth < 1: return os.path.abspath(os.path.join( self.application.directory, bucket, object_name)) hash = hashlib.md5(object_name).hexdigest() path = os.path.abspath(os.path.join( self.application.directory, bucket)) for i in range(self.application.bucket_depth): path = os.path.join(path, hash[:2 * (i + 1)]) return os.path.join(path, object_name) class RootHandler(BaseRequestHandler): def get(self): names = os.listdir(self.application.directory) buckets = [] for name in names: path = os.path.join(self.application.directory, name) info = os.stat(path) buckets.append({ "Name": name, "CreationDate": datetime.datetime.utcfromtimestamp( info.st_ctime), }) self.render_xml({"ListAllMyBucketsResult": { "Buckets": {"Bucket": buckets}, }}) class BucketHandler(BaseRequestHandler): def get(self, bucket_name): prefix = self.get_argument("prefix", u"") marker = self.get_argument("marker", u"") max_keys = int(self.get_argument("max-keys", 50000)) path = os.path.abspath(os.path.join(self.application.directory, bucket_name)) terse = int(self.get_argument("terse", 0)) if not path.startswith(self.application.directory) or \ not os.path.isdir(path): raise web.HTTPError(404) object_names = [] for root, dirs, files in os.walk(path): for file_name in files: object_names.append(os.path.join(root, file_name)) skip = len(path) + 1 for i in range(self.application.bucket_depth): skip += 2 * (i + 1) + 1 object_names = [n[skip:] for n in object_names] object_names.sort() contents = [] start_pos = 0 if marker: start_pos = bisect.bisect_right(object_names, marker, start_pos) if prefix: start_pos = bisect.bisect_left(object_names, prefix, start_pos) truncated = False for object_name in object_names[start_pos:]: if not object_name.startswith(prefix): break if len(contents) >= max_keys: truncated = True break object_path = self._object_path(bucket_name, object_name) c = {"Key": object_name} if not terse: info = os.stat(object_path) c.update({ "LastModified": datetime.datetime.utcfromtimestamp( info.st_mtime), "Size": info.st_size, }) contents.append(c) marker = object_name self.render_xml({"ListBucketResult": { "Name": bucket_name, "Prefix": prefix, "Marker": marker, "MaxKeys": max_keys, "IsTruncated": truncated, "Contents": contents, }}) def put(self, bucket_name): path = os.path.abspath(os.path.join( self.application.directory, bucket_name)) if not path.startswith(self.application.directory) or \ os.path.exists(path): raise web.HTTPError(403) os.makedirs(path) self.finish() def delete(self, bucket_name): path = os.path.abspath(os.path.join( self.application.directory, bucket_name)) if not path.startswith(self.application.directory) or \ not os.path.isdir(path): raise web.HTTPError(404) if len(os.listdir(path)) > 0: raise web.HTTPError(403) os.rmdir(path) self.set_status(204) self.finish() class ObjectHandler(BaseRequestHandler): def get(self, bucket, object_name): object_name = urllib.unquote(object_name) path = self._object_path(bucket, object_name) if not path.startswith(self.application.directory) or \ not os.path.isfile(path): raise web.HTTPError(404) info = os.stat(path) self.set_header("Content-Type", "application/unknown") self.set_header("Last-Modified", datetime.datetime.utcfromtimestamp( info.st_mtime)) object_file = open(path, "rb") try: self.finish(object_file.read()) finally: object_file.close() def put(self, bucket, object_name): object_name = urllib.unquote(object_name) bucket_dir = os.path.abspath(os.path.join( self.application.directory, bucket)) if not bucket_dir.startswith(self.application.directory) or \ not os.path.isdir(bucket_dir): raise web.HTTPError(404) path = self._object_path(bucket, object_name) if not path.startswith(bucket_dir) or os.path.isdir(path): raise web.HTTPError(403) directory = os.path.dirname(path) if not os.path.exists(directory): os.makedirs(directory) object_file = open(path, "w") object_file.write(self.request.body) object_file.close() self.finish() def delete(self, bucket, object_name): object_name = urllib.unquote(object_name) path = self._object_path(bucket, object_name) if not path.startswith(self.application.directory) or \ not os.path.isfile(path): raise web.HTTPError(404) os.unlink(path) self.set_status(204) self.finish() if __name__ == "__main__": options.parse_command_line() start(options.port, options.root_directory, options.bucket_depth)

import os import StringIO import cProfile from datetime import datetime import pytz from django.shortcuts import * from django.utils import timezone class TimezoneMiddleware(object): def process_request(self, request): if request.user.is_authenticated(): tzname = request.user.profile.timezone if tzname: timezone.activate(pytz.timezone(tzname)) else: if "/settings" not in request.path and "/admin" not in request.path and "/static" not in request.path: return redirect('/settings') from django.conf import settings from django.http import HttpResponseRedirect class SSLMiddleware(object): def process_request(self, request): if not any([settings.DEBUG, request.is_secure(), request.META.get("HTTP_X_FORWARDED_PROTO", "") == 'https']): url = request.build_absolute_uri(request.get_full_path()) secure_url = url.replace("http://", "https://") return HttpResponseRedirect(secure_url)

from qingcloud.cli.misc.utils import explode_array from qingcloud.cli.iaas_client.actions.base import BaseAction class LeaveVxnetAction(BaseAction): action = 'LeaveVxnet' command = 'leave-vxnet' usage = '%(prog)s --instances "instance_id, ..." --vxnet <vxnet_id> [-f <conf_file>]' @classmethod def add_ext_arguments(cls, parser): parser.add_argument('-i', '--instances', dest='instances', action='store', type=str, default='', help='the IDs of instances that will leave a vxnet.') parser.add_argument('-v', '--vxnet', dest='vxnet', action='store', type=str, default='', help='the ID of the vxnet the instances will leave. ') @classmethod def build_directive(cls, options): instances = explode_array(options.instances) if not options.vxnet or not instances: print('error: [instances] and [vxnet] should be specified') return None return { 'vxnet': options.vxnet, 'instances': instances, }

import datetime import tzlocal def now_tz(): """Get the current local time as a time zone aware datetime.""" now = datetime.datetime.now(datetime.timezone.utc) return now.astimezone() def start_of_day_tz(): """Get the start of the current day as a time zone aware datetime.""" now = now_tz() return now.replace(hour=0, minute=0, second=0, microsecond=0) def end_of_day_tz(): """Get the end of the current day as a time zone aware datetime.""" now = now_tz() return now.replace(hour=23, minute=59, second=59, microsecond=9999) def parse_date_tz(date): """Parse an ISO8601 date string returning a time zone aware datetime. If you want parsing of times and time zones, try the dateutil package. """ parsed = datetime.datetime.strptime(date, "%Y-%m-%d") time_zone = tzlocal.get_localzone() return time_zone.localize(parsed)

"""Helper classes for Google Assistant integration.""" from __future__ import annotations from abc import ABC, abstractmethod from asyncio import gather from collections.abc import Mapping from http import HTTPStatus import logging import pprint from aiohttp.web import json_response from homeassistant.components import webhook from homeassistant.const import ( ATTR_DEVICE_CLASS, ATTR_SUPPORTED_FEATURES, CLOUD_NEVER_EXPOSED_ENTITIES, CONF_NAME, STATE_UNAVAILABLE, ) from homeassistant.core import Context, HomeAssistant, State, callback from homeassistant.helpers import start from homeassistant.helpers.area_registry import AreaEntry from homeassistant.helpers.device_registry import DeviceEntry from homeassistant.helpers.entity_registry import RegistryEntry from homeassistant.helpers.event import async_call_later from homeassistant.helpers.network import get_url from homeassistant.helpers.storage import Store from . import trait from .const import ( CONF_ALIASES, CONF_ROOM_HINT, DEVICE_CLASS_TO_GOOGLE_TYPES, DOMAIN, DOMAIN_TO_GOOGLE_TYPES, ERR_FUNCTION_NOT_SUPPORTED, NOT_EXPOSE_LOCAL, SOURCE_LOCAL, STORE_AGENT_USER_IDS, ) from .error import SmartHomeError SYNC_DELAY = 15 _LOGGER = logging.getLogger(__name__) async def _get_entity_and_device( hass, entity_id ) -> tuple[RegistryEntry, DeviceEntry] | None: """Fetch the entity and device entries for a entity_id.""" dev_reg, ent_reg = await gather( hass.helpers.device_registry.async_get_registry(), hass.helpers.entity_registry.async_get_registry(), ) if not (entity_entry := ent_reg.async_get(entity_id)): return None, None device_entry = dev_reg.devices.get(entity_entry.device_id) return entity_entry, device_entry async def _get_area(hass, entity_entry, device_entry) -> AreaEntry | None: """Calculate the area for an entity.""" if entity_entry and entity_entry.area_id: area_id = entity_entry.area_id elif device_entry and device_entry.area_id: area_id = device_entry.area_id else: return None area_reg = await hass.helpers.area_registry.async_get_registry() return area_reg.areas.get(area_id) async def _get_device_info(device_entry) -> dict[str, str] | None: """Retrieve the device info for a device.""" if not device_entry: return None device_info = {} if device_entry.manufacturer: device_info["manufacturer"] = device_entry.manufacturer if device_entry.model: device_info["model"] = device_entry.model if device_entry.sw_version: device_info["swVersion"] = device_entry.sw_version return device_info class AbstractConfig(ABC): """Hold the configuration for Google Assistant.""" _unsub_report_state = None def __init__(self, hass): """Initialize abstract config.""" self.hass = hass self._store = None self._google_sync_unsub = {} self._local_sdk_active = False async def async_initialize(self): """Perform async initialization of config.""" self._store = GoogleConfigStore(self.hass) await self._store.async_load() if not self.enabled: return async def sync_google(_): """Sync entities to Google.""" await self.async_sync_entities_all() start.async_at_start(self.hass, sync_google) @property def enabled(self): """Return if Google is enabled.""" return False @property def entity_config(self): """Return entity config.""" return {} @property def secure_devices_pin(self): """Return entity config.""" return None @property def is_reporting_state(self): """Return if we're actively reporting states.""" return self._unsub_report_state is not None @property def is_local_sdk_active(self): """Return if we're actively accepting local messages.""" return self._local_sdk_active @property def should_report_state(self): """Return if states should be proactively reported.""" return False @property def local_sdk_webhook_id(self): """Return the local SDK webhook ID. Return None to disable the local SDK. """ return None @property def local_sdk_user_id(self): """Return the user ID to be used for actions received via the local SDK.""" raise NotImplementedError @abstractmethod def get_agent_user_id(self, context): """Get agent user ID from context.""" @abstractmethod def should_expose(self, state) -> bool: """Return if entity should be exposed.""" def should_2fa(self, state): """If an entity should have 2FA checked.""" # pylint: disable=no-self-use return True async def async_report_state(self, message, agent_user_id: str): """Send a state report to Google.""" raise NotImplementedError async def async_report_state_all(self, message): """Send a state report to Google for all previously synced users.""" jobs = [ self.async_report_state(message, agent_user_id) for agent_user_id in self._store.agent_user_ids ] await gather(*jobs) @callback def async_enable_report_state(self): """Enable proactive mode.""" # Circular dep # pylint: disable=import-outside-toplevel from .report_state import async_enable_report_state if self._unsub_report_state is None: self._unsub_report_state = async_enable_report_state(self.hass, self) @callback def async_disable_report_state(self): """Disable report state.""" if self._unsub_report_state is not None: self._unsub_report_state() self._unsub_report_state = None async def async_sync_entities(self, agent_user_id: str): """Sync all entities to Google.""" # Remove any pending sync self._google_sync_unsub.pop(agent_user_id, lambda: None)() status = await self._async_request_sync_devices(agent_user_id) if status == HTTPStatus.NOT_FOUND: await self.async_disconnect_agent_user(agent_user_id) return status async def async_sync_entities_all(self): """Sync all entities to Google for all registered agents.""" res = await gather( *( self.async_sync_entities(agent_user_id) for agent_user_id in self._store.agent_user_ids ) ) return max(res, default=204) @callback def async_schedule_google_sync(self, agent_user_id: str): """Schedule a sync.""" async def _schedule_callback(_now): """Handle a scheduled sync callback.""" self._google_sync_unsub.pop(agent_user_id, None) await self.async_sync_entities(agent_user_id) self._google_sync_unsub.pop(agent_user_id, lambda: None)() self._google_sync_unsub[agent_user_id] = async_call_later( self.hass, SYNC_DELAY, _schedule_callback ) @callback def async_schedule_google_sync_all(self): """Schedule a sync for all registered agents.""" for agent_user_id in self._store.agent_user_ids: self.async_schedule_google_sync(agent_user_id) async def _async_request_sync_devices(self, agent_user_id: str) -> int: """Trigger a sync with Google. Return value is the HTTP status code of the sync request. """ raise NotImplementedError async def async_connect_agent_user(self, agent_user_id: str): """Add an synced and known agent_user_id. Called when a completed sync response have been sent to Google. """ self._store.add_agent_user_id(agent_user_id) async def async_disconnect_agent_user(self, agent_user_id: str): """Turn off report state and disable further state reporting. Called when the user disconnects their account from Google. """ self._store.pop_agent_user_id(agent_user_id) @callback def async_enable_local_sdk(self): """Enable the local SDK.""" if (webhook_id := self.local_sdk_webhook_id) is None: return try: webhook.async_register( self.hass, DOMAIN, "Local Support", webhook_id, self._handle_local_webhook, ) except ValueError: _LOGGER.info("Webhook handler is already defined!") return self._local_sdk_active = True @callback def async_disable_local_sdk(self): """Disable the local SDK.""" if not self._local_sdk_active: return webhook.async_unregister(self.hass, self.local_sdk_webhook_id) self._local_sdk_active = False async def _handle_local_webhook(self, hass, webhook_id, request): """Handle an incoming local SDK message.""" # Circular dep # pylint: disable=import-outside-toplevel from . import smart_home payload = await request.json() if _LOGGER.isEnabledFor(logging.DEBUG): _LOGGER.debug("Received local message:\n%s\n", pprint.pformat(payload)) if not self.enabled: return json_response(smart_home.turned_off_response(payload)) result = await smart_home.async_handle_message( self.hass, self, self.local_sdk_user_id, payload, SOURCE_LOCAL ) if _LOGGER.isEnabledFor(logging.DEBUG): _LOGGER.debug("Responding to local message:\n%s\n", pprint.pformat(result)) return json_response(result) class GoogleConfigStore: """A configuration store for google assistant.""" _STORAGE_VERSION = 1 _STORAGE_KEY = DOMAIN def __init__(self, hass): """Initialize a configuration store.""" self._hass = hass self._store = Store(hass, self._STORAGE_VERSION, self._STORAGE_KEY) self._data = {STORE_AGENT_USER_IDS: {}} @property def agent_user_ids(self): """Return a list of connected agent user_ids.""" return self._data[STORE_AGENT_USER_IDS] @callback def add_agent_user_id(self, agent_user_id): """Add an agent user id to store.""" if agent_user_id not in self._data[STORE_AGENT_USER_IDS]: self._data[STORE_AGENT_USER_IDS][agent_user_id] = {} self._store.async_delay_save(lambda: self._data, 1.0) @callback def pop_agent_user_id(self, agent_user_id): """Remove agent user id from store.""" if agent_user_id in self._data[STORE_AGENT_USER_IDS]: self._data[STORE_AGENT_USER_IDS].pop(agent_user_id, None) self._store.async_delay_save(lambda: self._data, 1.0) async def async_load(self): """Store current configuration to disk.""" if data := await self._store.async_load(): self._data = data class RequestData: """Hold data associated with a particular request.""" def __init__( self, config: AbstractConfig, user_id: str, source: str, request_id: str, devices: list[dict] | None, ) -> None: """Initialize the request data.""" self.config = config self.source = source self.request_id = request_id self.context = Context(user_id=user_id) self.devices = devices @property def is_local_request(self): """Return if this is a local request.""" return self.source == SOURCE_LOCAL def get_google_type(domain, device_class): """Google type based on domain and device class.""" typ = DEVICE_CLASS_TO_GOOGLE_TYPES.get((domain, device_class)) return typ if typ is not None else DOMAIN_TO_GOOGLE_TYPES[domain] class GoogleEntity: """Adaptation of Entity expressed in Google's terms.""" def __init__( self, hass: HomeAssistant, config: AbstractConfig, state: State ) -> None: """Initialize a Google entity.""" self.hass = hass self.config = config self.state = state self._traits = None @property def entity_id(self): """Return entity ID.""" return self.state.entity_id @callback def traits(self): """Return traits for entity.""" if self._traits is not None: return self._traits state = self.state domain = state.domain attributes = state.attributes features = attributes.get(ATTR_SUPPORTED_FEATURES, 0) if not isinstance(features, int): _LOGGER.warning( "Entity %s contains invalid supported_features value %s", self.entity_id, features, ) return [] device_class = state.attributes.get(ATTR_DEVICE_CLASS) self._traits = [ Trait(self.hass, state, self.config) for Trait in trait.TRAITS if Trait.supported(domain, features, device_class, attributes) ] return self._traits @callback def should_expose(self): """If entity should be exposed.""" return self.config.should_expose(self.state) @callback def should_expose_local(self) -> bool: """Return if the entity should be exposed locally.""" return ( self.should_expose() and get_google_type( self.state.domain, self.state.attributes.get(ATTR_DEVICE_CLASS) ) not in NOT_EXPOSE_LOCAL and not self.might_2fa() ) @callback def is_supported(self) -> bool: """Return if the entity is supported by Google.""" return bool(self.traits()) @callback def might_2fa(self) -> bool: """Return if the entity might encounter 2FA.""" if not self.config.should_2fa(self.state): return False return self.might_2fa_traits() @callback def might_2fa_traits(self) -> bool: """Return if the entity might encounter 2FA based on just traits.""" state = self.state domain = state.domain features = state.attributes.get(ATTR_SUPPORTED_FEATURES, 0) device_class = state.attributes.get(ATTR_DEVICE_CLASS) return any( trait.might_2fa(domain, features, device_class) for trait in self.traits() ) async def sync_serialize(self, agent_user_id): """Serialize entity for a SYNC response. https://developers.google.com/actions/smarthome/create-app#actiondevicessync """ state = self.state entity_config = self.config.entity_config.get(state.entity_id, {}) name = (entity_config.get(CONF_NAME) or state.name).strip() domain = state.domain device_class = state.attributes.get(ATTR_DEVICE_CLASS) entity_entry, device_entry = await _get_entity_and_device( self.hass, state.entity_id ) traits = self.traits() device_type = get_google_type(domain, device_class) device = { "id": state.entity_id, "name": {"name": name}, "attributes": {}, "traits": [trait.name for trait in traits], "willReportState": self.config.should_report_state, "type": device_type, } # use aliases if aliases := entity_config.get(CONF_ALIASES): device["name"]["nicknames"] = [name] + aliases if self.config.is_local_sdk_active and self.should_expose_local(): device["otherDeviceIds"] = [{"deviceId": self.entity_id}] device["customData"] = { "webhookId": self.config.local_sdk_webhook_id, "httpPort": self.hass.http.server_port, "httpSSL": self.hass.config.api.use_ssl, "uuid": await self.hass.helpers.instance_id.async_get(), "baseUrl": get_url(self.hass, prefer_external=True), "proxyDeviceId": agent_user_id, } for trt in traits: device["attributes"].update(trt.sync_attributes()) if room := entity_config.get(CONF_ROOM_HINT): device["roomHint"] = room else: area = await _get_area(self.hass, entity_entry, device_entry) if area and area.name: device["roomHint"] = area.name if device_info := await _get_device_info(device_entry): device["deviceInfo"] = device_info return device @callback def query_serialize(self): """Serialize entity for a QUERY response. https://developers.google.com/actions/smarthome/create-app#actiondevicesquery """ state = self.state if state.state == STATE_UNAVAILABLE: return {"online": False} attrs = {"online": True} for trt in self.traits(): deep_update(attrs, trt.query_attributes()) return attrs @callback def reachable_device_serialize(self): """Serialize entity for a REACHABLE_DEVICE response.""" return {"verificationId": self.entity_id} async def execute(self, data, command_payload): """Execute a command. https://developers.google.com/actions/smarthome/create-app#actiondevicesexecute """ command = command_payload["command"] params = command_payload.get("params", {}) challenge = command_payload.get("challenge", {}) executed = False for trt in self.traits(): if trt.can_execute(command, params): await trt.execute(command, data, params, challenge) executed = True break if not executed: raise SmartHomeError( ERR_FUNCTION_NOT_SUPPORTED, f"Unable to execute {command} for {self.state.entity_id}", ) @callback def async_update(self): """Update the entity with latest info from Home Assistant.""" self.state = self.hass.states.get(self.entity_id) if self._traits is None: return for trt in self._traits: trt.state = self.state def deep_update(target, source): """Update a nested dictionary with another nested dictionary.""" for key, value in source.items(): if isinstance(value, Mapping): target[key] = deep_update(target.get(key, {}), value) else: target[key] = value return target @callback def async_get_entities(hass, config) -> list[GoogleEntity]: """Return all entities that are supported by Google.""" entities = [] for state in hass.states.async_all(): if state.entity_id in CLOUD_NEVER_EXPOSED_ENTITIES: continue entity = GoogleEntity(hass, config, state) if entity.is_supported(): entities.append(entity) return entities

from odoo import api, models from odoo.tools.translate import _ PARAMS = [ ("web_debranding.new_name", _("Software")), ("web_debranding.new_title", _("Software")), ("web_debranding.new_website", "example.com"), ("web_debranding.new_documentation_website", ""), ("web_debranding.favicon_url", ""), ("web_debranding.send_publisher_warranty_url", "0"), ("web_debranding.icon_url", ""), ("web_debranding.apple_touch_icon_url", ""), ] def get_debranding_parameters_env(env): res = {} for param, default in PARAMS: value = env["ir.config_parameter"].sudo().get_param(param, default) res[param] = value.strip() return res class IrConfigParameter(models.Model): _inherit = "ir.config_parameter" @api.model def get_debranding_parameters(self): return get_debranding_parameters_env(self.env) @api.model def create_debranding_parameters(self): for param, default in PARAMS: if not self.env["ir.config_parameter"].sudo().get_param(param): self.env["ir.config_parameter"].sudo().set_param(param, default or " ")

from __future__ import unicode_literals from django import forms from django.contrib import admin from django.contrib.auth import get_user_model from django.db.models import Q from django.utils.translation import ugettext_lazy as _ from reviewers import review_group_name from reviewers.models import Review, Reviewer from .actions import export_as_csv_action class ReviewAdminForm(forms.ModelForm): class Meta: model = Review fields = "__all__" def __init__(self, *args, **kwargs): super(ReviewAdminForm, self).__init__(*args, **kwargs) self.fields["user"].queryset = get_user_model().objects.filter( Q(groups__name=review_group_name) | Q(is_superuser=True) ) def clean(self): cleaned_data = super(ReviewAdminForm, self).clean() user = cleaned_data.get("user") proposal = cleaned_data.get("proposal") if user == proposal.speaker.user: raise forms.ValidationError("You can not asign a review to its author!") @admin.register(Review) class ReviewAdmin(admin.ModelAdmin): list_display = ["id", "proposal", "user", "relevance", "interest", "newness", "get_avg", "conflict", "finished", "created"] list_filter = ["proposal", "user", "conflict", "finished"] actions = [ export_as_csv_action("CSV Export", fields=[ "id", "proposal", "user", "relevance", "interest", "newness", "avg_property", "conflict", "finished", "created", ]) ] form = ReviewAdminForm def get_avg(self, instance): return instance.avg() get_avg.short_description = _("Media") @admin.register(Reviewer) class ReviewerAdmin(admin.ModelAdmin): list_display = ["id", "user", "get_reviews", "created"] def get_reviews(self, instance): return instance.reviews_count() get_reviews.short_description = _("Revisiones")

from __future__ import print_function import time import re import sys from google.appengine.ext import db def iterate(query, callback=lambda x: x, batch_size=1000, verbose=True): """Utility for iterating over a query, applying the callback to each row.""" start = time.time() count = 0 results = query.fetch(batch_size) while results: rstart = time.time() for row in results: output = callback(row) if output: print(output) count += 1 if verbose: print('%s rows processed in %.1fs' % (count, time.time() - rstart)) print('total time: %.1fs' % (time.time() - start)) results = query.with_cursor(query.cursor()).fetch(batch_size) callback() print('total rows: %s, total time: %.1fs' % (count, time.time() - start)) def dangling_pic(pic): """Filter for photos with no referencing person.""" ppl = pic.person_set.fetch(100) if not ppl: return pic.key().id() ids = [] def dangling_pic_list(pic): """Track photos with no referencing person.""" if pic and not pic.person_set.count(): ids.append(pic.key().id())

# Copyright 2009, Jean-Michel Sizun # Copyright 2009 Frank Scholz <coherence@beebits.net> import os.path import time from twisted.internet import threads from twisted.web import server, static from twisted.web.error import PageRedirect from coherence.upnp.core.utils import ReverseProxyUriResource from twisted.internet import task from coherence.upnp.core import utils from coherence.upnp.core import DIDLLite from coherence.backend import BackendStore, BackendItem, Container, LazyContainer, \ AbstractBackendStore from coherence import log from urlparse import urlsplit import gdata.photos.service import gdata.media import gdata.geo DEFAULT_NAME = 'Picasa Web Albums' FEED_URI = 'http://picasaweb.google.com/data/feed/api/featured' class PicasaProxy(ReverseProxyUriResource): def __init__(self, uri): ReverseProxyUriResource.__init__(self, uri) def render(self, request): request.requestHeaders.removeHeader('referer') return ReverseProxyUriResource.render(self, request) class PicasaPhotoItem(BackendItem): def __init__(self, photo): BackendItem.__init__(self) #print photo self.photo = photo self.name = photo.summary.text if self.name is None: self.name = photo.title.text self.duration = None self.size = None self.mimetype = photo.content.type self.description = photo.summary.text self.date = None self.item = None self.photo_url = photo.content.src self.thumbnail_url = photo.media.thumbnail[0].url self.url = None self.location = PicasaProxy(self.photo_url) def replace_by(self, item): #print photo self.photo = item.photo self.name = photo.summary.text if self.name is None: self.name = photo.title.text self.mimetype = self.photo.content.type self.description = self.photo.summary.text self.photo_url = self.photo.content.src self.thumbnail_url = self.photo.media.thumbnail[0].url self.location = PicasaProxy(self.photo_url) return True def get_item(self): if self.item == None: upnp_id = self.get_id() upnp_parent_id = self.parent.get_id() self.item = DIDLLite.Photo(upnp_id, upnp_parent_id, self.name) res = DIDLLite.Resource(self.url, 'http-get:*:%s:*' % self.mimetype) self.item.res.append(res) self.item.childCount = 0 return self.item def get_path(self): return self.url def get_id(self): return self.storage_id class PicasaStore(AbstractBackendStore): logCategory = 'picasa_store' implements = ['MediaServer'] description = ('Picasa Web Albums', 'connects to the Picasa Web Albums service and exposes the featured photos and albums for a given user.', None) options = [{'option': 'name', 'text': 'Server Name:', 'type': 'string', 'default': 'my media', 'help': 'the name under this MediaServer shall show up with on other UPnP clients'}, {'option': 'version', 'text': 'UPnP Version:', 'type': 'int', 'default': 2, 'enum': (2, 1), 'help': 'the highest UPnP version this MediaServer shall support', 'level': 'advance'}, {'option': 'uuid', 'text': 'UUID Identifier:', 'type': 'string', 'help': 'the unique (UPnP) identifier for this MediaServer, usually automatically set', 'level': 'advance'}, {'option': 'refresh', 'text': 'Refresh period', 'type': 'string'}, {'option': 'login', 'text': 'User ID:', 'type': 'string', 'group': 'User Account'}, {'option': 'password', 'text': 'Password:', 'type': 'string', 'group': 'User Account'}, ] def __init__(self, server, **kwargs): AbstractBackendStore.__init__(self, server, **kwargs) self.name = kwargs.get('name', DEFAULT_NAME) self.refresh = int(kwargs.get('refresh', 60)) * 60 self.login = kwargs.get('userid', kwargs.get('login', '')) self.password = kwargs.get('password', '') rootContainer = Container(None, self.name) self.set_root_item(rootContainer) self.AlbumsContainer = LazyContainer(rootContainer, 'My Albums', None, self.refresh, self.retrieveAlbums) rootContainer.add_child(self.AlbumsContainer) self.FeaturedContainer = LazyContainer(rootContainer, 'Featured photos', None, self.refresh, self.retrieveFeaturedPhotos) rootContainer.add_child(self.FeaturedContainer) self.init_completed() def __repr__(self): return self.__class__.__name__ def upnp_init(self): self.current_connection_id = None if self.server: self.server.connection_manager_server.set_variable(0, 'SourceProtocolInfo', 'http-get:*:image/jpeg:DLNA.ORG_PN=JPEG_TN;DLNA.ORG_OP=01;DLNA.ORG_FLAGS=00f00000000000000000000000000000,' 'http-get:*:image/jpeg:DLNA.ORG_PN=JPEG_SM;DLNA.ORG_OP=01;DLNA.ORG_FLAGS=00f00000000000000000000000000000,' 'http-get:*:image/jpeg:DLNA.ORG_PN=JPEG_MED;DLNA.ORG_OP=01;DLNA.ORG_FLAGS=00f00000000000000000000000000000,' 'http-get:*:image/jpeg:DLNA.ORG_PN=JPEG_LRG;DLNA.ORG_OP=01;DLNA.ORG_FLAGS=00f00000000000000000000000000000,' 'http-get:*:image/jpeg:*,' 'http-get:*:image/gif:*,' 'http-get:*:image/png:*', default=True) self.wmc_mapping = {'16': self.get_root_id()} self.gd_client = gdata.photos.service.PhotosService() self.gd_client.email = self.login self.gd_client.password = self.password self.gd_client.source = 'Coherence UPnP backend' if len(self.login) > 0: d = threads.deferToThread(self.gd_client.ProgrammaticLogin) def retrieveAlbums(self, parent=None): albums = threads.deferToThread(self.gd_client.GetUserFeed) def gotAlbums(albums): if albums is None: print "Unable to retrieve albums" return for album in albums.entry: title = album.title.text album_id = album.gphoto_id.text item = LazyContainer(parent, title, album_id, self.refresh, self.retrieveAlbumPhotos, album_id=album_id) parent.add_child(item, external_id=album_id) def gotError(error): print "ERROR: %s" % error albums.addCallbacks(gotAlbums, gotError) return albums def retrieveFeedPhotos (self, parent=None, feed_uri=''): #print feed_uri photos = threads.deferToThread(self.gd_client.GetFeed, feed_uri) def gotPhotos(photos): if photos is None: print "Unable to retrieve photos for feed %s" % feed_uri return for photo in photos.entry: photo_id = photo.gphoto_id.text item = PicasaPhotoItem(photo) item.parent = parent parent.add_child(item, external_id=photo_id) def gotError(error): print "ERROR: %s" % error photos.addCallbacks(gotPhotos, gotError) return photos def retrieveAlbumPhotos (self, parent=None, album_id=''): album_feed_uri = '/data/feed/api/user/%s/albumid/%s?kind=photo' % (self.login, album_id) return self.retrieveFeedPhotos(parent, album_feed_uri) def retrieveFeaturedPhotos (self, parent=None): return self.retrieveFeedPhotos(parent, FEED_URI)

""" pyhik.constants ~~~~~~~~~~~~~~~~~~~~ Constants list Copyright (c) 2016-2021 John Mihalic <https://github.com/mezz64> Licensed under the MIT license. """ MAJOR_VERSION = 0 MINOR_VERSION = 3 SUB_MINOR_VERSION = 1 __version__ = '{}.{}.{}'.format( MAJOR_VERSION, MINOR_VERSION, SUB_MINOR_VERSION) CONNECT_TIMEOUT = 10 READ_TIMEOUT = 60 DEFAULT_PORT = 80 XML_ENCODING = 'UTF-8' XML_NAMESPACE = 'http://www.hikvision.com/ver20/XMLSchema' DEFAULT_HEADERS = { 'Content-Type': "application/xml; charset='UTF-8'", 'Accept': "*/*" } SENSOR_MAP = { 'vmd': 'Motion', 'linedetection': 'Line Crossing', 'fielddetection': 'Field Detection', 'tamperdetection': 'Tamper Detection', 'shelteralarm': 'Tamper Detection', 'defocus': 'Tamper Detection', 'diskfull': 'Disk Full', 'diskerror': 'Disk Error', 'nicbroken': 'Net Interface Broken', 'ipconflict': 'IP Conflict', 'illaccess': 'Illegal Access', 'videomismatch': 'Video Mismatch', 'badvideo': 'Bad Video', 'pir': 'PIR Alarm', 'facedetection': 'Face Detection', 'scenechangedetection': 'Scene Change Detection', 'io': 'I/O', 'unattendedbaggage': 'Unattended Baggage', 'attendedbaggage': 'Attended Baggage', 'recordingfailure': 'Recording Failure', 'regionexiting': "Exiting Region", 'regionentrance': "Entering Region", 'duration': "Ongoing Events" } # The name 'id' should always be last CHANNEL_NAMES = ['dynVideoInputChannelID', 'videoInputChannelID', 'dynInputIOPortID', 'inputIOPortID', 'id'] ID_TYPES = ['channelID', 'dynChannelID', 'inputIOPortID', 'dynInputIOPortID'] CAM_DEVICE = 'CAM' NVR_DEVICE = 'NVR' CONTEXT_INFO = 'INFO' CONTEXT_TRIG = 'TRIGGERS' CONTEXT_ALERT = 'ALERTS' CONTEXT_MOTION = 'MOTION'

from django.forms import CharField, Form, ModelChoiceField from django.utils.translation import ugettext_lazy as _ from sendinel.backend.authhelper import format_and_validate_phonenumber from sendinel.backend.models import get_enabled_wocs from sendinel.infoservices.models import InfoMessage, InfoService class RegisterPatientForMedicineForm(Form): phone_number = CharField(validators = [format_and_validate_phonenumber], error_messages={'required':_('Please enter a phone number')}) way_of_communication = ModelChoiceField( queryset = get_enabled_wocs(), error_messages={'required': \ _('Please choose a way of communication')}) medicine = ModelChoiceField( queryset=InfoService.objects.filter(type='medicine'), error_messages={'required': \ _('Please choose a medicine'), 'invalid_choice': _('Please choose a medicine')}) class MedicineMessageValidationForm(Form): medicine = ModelChoiceField( queryset=InfoService.objects.filter(type='medicine'), error_messages={'required': \ _('Please choose a medicine'), \ 'invalid_choice': \ _('Please choose a medicine')}) text = CharField(error_messages={ \ 'required': _('Please enter a text to send'), \ 'invalid': _('The text contains invalid characters')})

"""Helpers to build or extract data from feaLib AST objects.""" from __future__ import print_function, division, absolute_import, unicode_literals from fontTools.feaLib import ast from fontTools import unicodedata import collections import re # we re-export here all the feaLib AST classes so they can be used from # writer modules with a single `from ufo2ft.featureWriters import ast` import sys self = sys.modules[__name__] for name in getattr(ast, "__all__", dir(ast)): if isinstance(getattr(ast, name), type): setattr(self, name, getattr(ast, name)) del sys, self, name def getScriptLanguageSystems(feaFile): """Return dictionary keyed by Unicode script code containing lists of (OT_SCRIPT_TAG, [OT_LANGUAGE_TAG, ...]) tuples (excluding "DFLT"). """ languagesByScript = collections.OrderedDict() for ls in [ st for st in feaFile.statements if isinstance(st, ast.LanguageSystemStatement) ]: if ls.script == "DFLT": continue languagesByScript.setdefault(ls.script, []).append(ls.language) langSysMap = collections.OrderedDict() for script, languages in languagesByScript.items(): sc = unicodedata.ot_tag_to_script(script) langSysMap.setdefault(sc, []).append((script, languages)) return langSysMap def iterFeatureBlocks(feaFile, tag=None): for statement in feaFile.statements: if isinstance(statement, ast.FeatureBlock): if tag is not None and statement.name != tag: continue yield statement def findFeatureTags(feaFile): return {f.name for f in iterFeatureBlocks(feaFile)} def iterClassDefinitions(feaFile, featureTag=None): if featureTag is None: # start from top-level class definitions for s in feaFile.statements: if isinstance(s, ast.GlyphClassDefinition): yield s # then iterate over per-feature class definitions for fea in iterFeatureBlocks(feaFile, tag=featureTag): for s in fea.statements: if isinstance(s, ast.GlyphClassDefinition): yield s LOOKUP_FLAGS = { "RightToLeft": 1, "IgnoreBaseGlyphs": 2, "IgnoreLigatures": 4, "IgnoreMarks": 8, } def makeLookupFlag(name=None, markAttachment=None, markFilteringSet=None): value = 0 if name is None else LOOKUP_FLAGS[name] if markAttachment is not None: assert isinstance(markAttachment, ast.GlyphClassDefinition) markAttachment = ast.GlyphClassName(markAttachment) if markFilteringSet is not None: assert isinstance(markFilteringSet, ast.GlyphClassDefinition) markFilteringSet = ast.GlyphClassName(markFilteringSet) return ast.LookupFlagStatement( value, markAttachment=markAttachment, markFilteringSet=markFilteringSet ) def makeGlyphClassDefinitions(groups, feaFile=None, stripPrefix=""): """ Given a groups dictionary ({str: list[str]}), create feaLib GlyphClassDefinition objects for each group. Return a dict keyed by the original group name. If `stripPrefix` (str) is provided and a group name starts with it, the string will be stripped from the beginning of the class name. """ classDefs = {} if feaFile is not None: classNames = {cdef.name for cdef in iterClassDefinitions(feaFile)} else: classNames = set() lengthPrefix = len(stripPrefix) for groupName, members in sorted(groups.items()): originalGroupName = groupName if stripPrefix and groupName.startswith(stripPrefix): groupName = groupName[lengthPrefix:] className = makeFeaClassName(groupName, classNames) classNames.add(className) classDef = makeGlyphClassDefinition(className, members) classDefs[originalGroupName] = classDef return classDefs def makeGlyphClassDefinition(className, members): glyphNames = [ast.GlyphName(g) for g in members] glyphClass = ast.GlyphClass(glyphNames) classDef = ast.GlyphClassDefinition(className, glyphClass) return classDef def makeFeaClassName(name, existingClassNames=None): """Make a glyph class name which is legal to use in feature text. Ensures the name only includes characters in "A-Za-z0-9._", and isn't already defined. """ name = re.sub(r"[^A-Za-z0-9._]", r"", name) if existingClassNames is None: return name i = 1 origName = name while name in existingClassNames: name = "%s_%d" % (origName, i) i += 1 return name def addLookupReferences( feature, lookups, script=None, languages=None, exclude_dflt=False ): """Add references to named lookups to the feature's statements. If `script` (str) and `languages` (sequence of str) are provided, only register the lookup for the given script and languages, optionally with `exclude_dflt` directive. Otherwise add a global reference which will be registered for all the scripts and languages in the feature file's `languagesystems` statements. """ assert lookups if not script: for lookup in lookups: feature.statements.append(ast.LookupReferenceStatement(lookup)) return feature.statements.append(ast.ScriptStatement(script)) if exclude_dflt: for language in languages or ("dflt",): feature.statements.append( ast.LanguageStatement(language, include_default=False) ) for lookup in lookups: feature.statements.append(ast.LookupReferenceStatement(lookup)) else: feature.statements.append(ast.LanguageStatement("dflt", include_default=True)) for lookup in lookups: feature.statements.append(ast.LookupReferenceStatement(lookup)) for language in languages or (): if language == "dflt": continue feature.statements.append( ast.LanguageStatement(language, include_default=True) ) _GDEFGlyphClasses = collections.namedtuple( "_GDEFGlyphClasses", "base ligature mark component" ) def getGDEFGlyphClasses(feaLib): """Return GDEF GlyphClassDef base/mark/ligature/component glyphs, or None if no GDEF table is defined in the feature file. """ for st in feaLib.statements: if isinstance(st, ast.TableBlock) and st.name == "GDEF": for st in st.statements: if isinstance(st, ast.GlyphClassDefStatement): return _GDEFGlyphClasses( frozenset(st.baseGlyphs.glyphSet()) if st.baseGlyphs is not None else frozenset(), frozenset(st.ligatureGlyphs.glyphSet()) if st.ligatureGlyphs is not None else frozenset(), frozenset(st.markGlyphs.glyphSet()) if st.markGlyphs is not None else frozenset(), frozenset(st.componentGlyphs.glyphSet()) if st.componentGlyphs is not None else frozenset(), ) return _GDEFGlyphClasses(None, None, None, None)

""" The classes in this module provide a property-like interface to widget instance variables in a class. These properties translate essential pieces of widget state into more convenient python objects (for example, the check state of a button to a bool). Example Use:: class Foo(object): bar = ButtonProperty('_button') def __init__(self): self._button = QtGui.QCheckBox() f = Foo() f.bar = True # equivalent to f._button.setChecked(True) assert f.bar == True """ from .qtutil import pretty_number class WidgetProperty(object): """ Base class for widget properties Subclasses implement, at a minimum, the "get" and "set" methods, which translate between widget states and python variables """ def __init__(self, att): """ :param att: The location, within a class instance, of the widget to wrap around. If the widget is nested inside another variable, normal '.' syntax can be used (e.g. 'sub_window.button') :type att: str""" self._att = att.split('.') def __get__(self, instance, type=None): widget = reduce(getattr, [instance] + self._att) return self.getter(widget) def __set__(self, instance, value): widget = reduce(getattr, [instance] + self._att) self.setter(widget, value) def getter(self, widget): """ Return the state of a widget. Depends on type of widget, and must be overridden""" raise NotImplementedError() def setter(self, widget, value): """ Set the state of a widget to a certain value""" raise NotImplementedError() class ButtonProperty(WidgetProperty): """Wrapper around the check state for QAbstractButton widgets""" def getter(self, widget): return widget.isChecked() def setter(self, widget, value): widget.setChecked(value) class FloatLineProperty(WidgetProperty): """Wrapper around the text state for QLineEdit widgets. Assumes that the text is a floating point number """ def getter(self, widget): try: return float(widget.text()) except ValueError: return 0 def setter(self, widget, value): widget.setText(pretty_number(value)) widget.editingFinished.emit()

import matplotlib from getdist import plots, MCSamples import getdist import numpy as np import matplotlib.pyplot as plt import astropy from loadMontePython import load as loadMCMC import glob basedir = '../chains/nonzero_model/' #"/home/zequnl/Projects/isocurvature_2017/analysis/plot_triangle/nonzero/" burnin = 1000 data1 = loadMCMC('../chains/planckdata/r1.txt', '../chains/planckdata/param') data2 = loadMCMC('../chains/planckdata/r2.txt', '../chains/planckdata/param') data = astropy.table.vstack( [data1[burnin:], data2[burnin:]]) data_planck = data[:] weights_planck = data['acceptance'][:] for col in ['likelihood', 'acceptance','omega_b','omega_cdm','100theta_s','tau_reio']: data.remove_column(col) nparr_planck = np.array(data.as_array().tolist()[:]) planck = MCSamples(samples=nparr_planck,names = data.colnames, labels = data.colnames, name_tag='Planck') ## C folder = basedir + 'fC/' files = glob.glob(folder + "*__*.txt") params = glob.glob(folder + "*_.paramnames") datalist = [] for f in files: datalist.append( loadMCMC(f, params[0]) ) data = astropy.table.vstack( datalist ) data_sim = data[:] weights_act = data['acceptance'][:] for col in ['likelihood', 'acceptance','omega_b','omega_cdm','100theta_s','tau_reio']: data.remove_column(col) nparr_act = np.array(data.as_array().tolist()[:]) planck_s4 = MCSamples(samples=nparr_act,names = data.colnames, labels = data.colnames, name_tag='Planck low_l + S4') ## E folder = basedir + 'fE/' files = glob.glob(folder + "*__*.txt") params = glob.glob(folder + "*_.paramnames") datalist = [] for f in files: datalist.append( loadMCMC(f, params[0]) ) data = astropy.table.vstack( datalist ) data_sim = data[:] weights_act = data['acceptance'][:] for col in ['likelihood', 'acceptance','omega_b','omega_cdm','100theta_s','tau_reio']: data.remove_column(col) nparr_act = np.array(data.as_array().tolist()[:]) pixie_planck = MCSamples(samples=nparr_act,names = data.colnames, labels = data.colnames, name_tag='PIXIE low_l + Planck high_l') ## F folder = basedir + 'fF/' files = glob.glob(folder + "*__*.txt") params = glob.glob(folder + "*_.paramnames") datalist = [] for f in files: datalist.append( loadMCMC(f, params[0]) ) data = astropy.table.vstack( datalist ) data_sim = data[:] weights_act = data['acceptance'][:] for col in ['likelihood', 'acceptance','omega_b','omega_cdm','100theta_s','tau_reio']: data.remove_column(col) nparr_act = np.array(data.as_array().tolist()[:]) pixie_s4 = MCSamples(samples=nparr_act,names = data.colnames, labels = data.colnames, name_tag='PIXIE low_l + S4') #Triangle plot g = plots.getSubplotPlotter() g.triangle_plot([ planck_s4, pixie_planck, pixie_s4], filled=True) # now we add some boundaries # P_II^1 for ax in g.subplots[:,2]: if ax != None: ax.set_xlim(0,ax.get_xlim()[1]) for ax in g.subplots[2,:]: if ax != None: ax.set_ylim(0,ax.get_ylim()[1]) # P_II^2 for ax in g.subplots[:,3]: if ax != None: ax.set_xlim(0,ax.get_xlim()[1]) for ax in g.subplots[3,:]: if ax != None: ax.set_ylim(0,ax.get_ylim()[1]) plt.savefig('../../figures/nonzero_forecast_all_overplotted.pdf') plt.show()

import sys from typing import cast, Iterable, List, Tuple, TYPE_CHECKING, Union from pyspark import since, SparkContext from pyspark.sql.column import _to_seq, _to_java_column from py4j.java_gateway import JavaObject if TYPE_CHECKING: from pyspark.sql._typing import ColumnOrName, ColumnOrName_ __all__ = ["Window", "WindowSpec"] def _to_java_cols(cols: Tuple[Union["ColumnOrName", List["ColumnOrName_"]], ...]) -> int: sc = SparkContext._active_spark_context if len(cols) == 1 and isinstance(cols[0], list): cols = cols[0] # type: ignore[assignment] assert sc is not None return _to_seq(sc, cast(Iterable["ColumnOrName"], cols), _to_java_column) class Window: """ Utility functions for defining window in DataFrames. .. versionadded:: 1.4 Notes ----- When ordering is not defined, an unbounded window frame (rowFrame, unboundedPreceding, unboundedFollowing) is used by default. When ordering is defined, a growing window frame (rangeFrame, unboundedPreceding, currentRow) is used by default. Examples -------- >>> # ORDER BY date ROWS BETWEEN UNBOUNDED PRECEDING AND CURRENT ROW >>> window = Window.orderBy("date").rowsBetween(Window.unboundedPreceding, Window.currentRow) >>> # PARTITION BY country ORDER BY date RANGE BETWEEN 3 PRECEDING AND 3 FOLLOWING >>> window = Window.orderBy("date").partitionBy("country").rangeBetween(-3, 3) """ _JAVA_MIN_LONG = -(1 << 63) # -9223372036854775808 _JAVA_MAX_LONG = (1 << 63) - 1 # 9223372036854775807 _PRECEDING_THRESHOLD = max(-sys.maxsize, _JAVA_MIN_LONG) _FOLLOWING_THRESHOLD = min(sys.maxsize, _JAVA_MAX_LONG) unboundedPreceding: int = _JAVA_MIN_LONG unboundedFollowing: int = _JAVA_MAX_LONG currentRow: int = 0 @staticmethod @since(1.4) def partitionBy(*cols: Union["ColumnOrName", List["ColumnOrName_"]]) -> "WindowSpec": """ Creates a :class:`WindowSpec` with the partitioning defined. Parameters ---------- cols : str, :class:`Column` or list names of columns or expressions """ sc = SparkContext._active_spark_context assert sc is not None and sc._jvm is not None jspec = sc._jvm.org.apache.spark.sql.expressions.Window.partitionBy(_to_java_cols(cols)) return WindowSpec(jspec) @staticmethod @since(1.4) def orderBy(*cols: Union["ColumnOrName", List["ColumnOrName_"]]) -> "WindowSpec": """ Creates a :class:`WindowSpec` with the ordering defined. Parameters ---------- cols : str, :class:`Column` or list names of columns or expressions """ sc = SparkContext._active_spark_context assert sc is not None and sc._jvm is not None jspec = sc._jvm.org.apache.spark.sql.expressions.Window.orderBy(_to_java_cols(cols)) return WindowSpec(jspec) @staticmethod def rowsBetween(start: int, end: int) -> "WindowSpec": """ Creates a :class:`WindowSpec` with the frame boundaries defined, from `start` (inclusive) to `end` (inclusive). Both `start` and `end` are relative positions from the current row. For example, "0" means "current row", while "-1" means the row before the current row, and "5" means the fifth row after the current row. We recommend users use ``Window.unboundedPreceding``, ``Window.unboundedFollowing``, and ``Window.currentRow`` to specify special boundary values, rather than using integral values directly. A row based boundary is based on the position of the row within the partition. An offset indicates the number of rows above or below the current row, the frame for the current row starts or ends. For instance, given a row based sliding frame with a lower bound offset of -1 and a upper bound offset of +2. The frame for row with index 5 would range from index 4 to index 7. .. versionadded:: 2.1.0 Parameters ---------- start : int boundary start, inclusive. The frame is unbounded if this is ``Window.unboundedPreceding``, or any value less than or equal to -9223372036854775808. end : int boundary end, inclusive. The frame is unbounded if this is ``Window.unboundedFollowing``, or any value greater than or equal to 9223372036854775807. Examples -------- >>> from pyspark.sql import Window >>> from pyspark.sql import functions as func >>> df = spark.createDataFrame( ... [(1, "a"), (1, "a"), (2, "a"), (1, "b"), (2, "b"), (3, "b")], ["id", "category"]) >>> df.show() +---+--------+ | id|category| +---+--------+ | 1| a| | 1| a| | 2| a| | 1| b| | 2| b| | 3| b| +---+--------+ Calculate sum of ``id`` in the range from currentRow to currentRow + 1 in partition ``category`` >>> window = Window.partitionBy("category").orderBy("id").rowsBetween(Window.currentRow, 1) >>> df.withColumn("sum", func.sum("id").over(window)).sort("id", "category", "sum").show() +---+--------+---+ | id|category|sum| +---+--------+---+ | 1| a| 2| | 1| a| 3| | 1| b| 3| | 2| a| 2| | 2| b| 5| | 3| b| 3| +---+--------+---+ """ if start <= Window._PRECEDING_THRESHOLD: start = Window.unboundedPreceding if end >= Window._FOLLOWING_THRESHOLD: end = Window.unboundedFollowing sc = SparkContext._active_spark_context assert sc is not None and sc._jvm is not None jspec = sc._jvm.org.apache.spark.sql.expressions.Window.rowsBetween(start, end) return WindowSpec(jspec) @staticmethod def rangeBetween(start: int, end: int) -> "WindowSpec": """ Creates a :class:`WindowSpec` with the frame boundaries defined, from `start` (inclusive) to `end` (inclusive). Both `start` and `end` are relative from the current row. For example, "0" means "current row", while "-1" means one off before the current row, and "5" means the five off after the current row. We recommend users use ``Window.unboundedPreceding``, ``Window.unboundedFollowing``, and ``Window.currentRow`` to specify special boundary values, rather than using integral values directly. A range-based boundary is based on the actual value of the ORDER BY expression(s). An offset is used to alter the value of the ORDER BY expression, for instance if the current ORDER BY expression has a value of 10 and the lower bound offset is -3, the resulting lower bound for the current row will be 10 - 3 = 7. This however puts a number of constraints on the ORDER BY expressions: there can be only one expression and this expression must have a numerical data type. An exception can be made when the offset is unbounded, because no value modification is needed, in this case multiple and non-numeric ORDER BY expression are allowed. .. versionadded:: 2.1.0 Parameters ---------- start : int boundary start, inclusive. The frame is unbounded if this is ``Window.unboundedPreceding``, or any value less than or equal to max(-sys.maxsize, -9223372036854775808). end : int boundary end, inclusive. The frame is unbounded if this is ``Window.unboundedFollowing``, or any value greater than or equal to min(sys.maxsize, 9223372036854775807). Examples -------- >>> from pyspark.sql import Window >>> from pyspark.sql import functions as func >>> df = spark.createDataFrame( ... [(1, "a"), (1, "a"), (2, "a"), (1, "b"), (2, "b"), (3, "b")], ["id", "category"]) >>> df.show() +---+--------+ | id|category| +---+--------+ | 1| a| | 1| a| | 2| a| | 1| b| | 2| b| | 3| b| +---+--------+ Calculate sum of ``id`` in the range from ``id`` of currentRow to ``id`` of currentRow + 1 in partition ``category`` >>> window = Window.partitionBy("category").orderBy("id").rangeBetween(Window.currentRow, 1) >>> df.withColumn("sum", func.sum("id").over(window)).sort("id", "category").show() +---+--------+---+ | id|category|sum| +---+--------+---+ | 1| a| 4| | 1| a| 4| | 1| b| 3| | 2| a| 2| | 2| b| 5| | 3| b| 3| +---+--------+---+ """ if start <= Window._PRECEDING_THRESHOLD: start = Window.unboundedPreceding if end >= Window._FOLLOWING_THRESHOLD: end = Window.unboundedFollowing sc = SparkContext._active_spark_context assert sc is not None and sc._jvm is not None jspec = sc._jvm.org.apache.spark.sql.expressions.Window.rangeBetween(start, end) return WindowSpec(jspec) class WindowSpec: """ A window specification that defines the partitioning, ordering, and frame boundaries. Use the static methods in :class:`Window` to create a :class:`WindowSpec`. .. versionadded:: 1.4.0 """ def __init__(self, jspec: JavaObject) -> None: self._jspec = jspec def partitionBy(self, *cols: Union["ColumnOrName", List["ColumnOrName_"]]) -> "WindowSpec": """ Defines the partitioning columns in a :class:`WindowSpec`. .. versionadded:: 1.4.0 Parameters ---------- cols : str, :class:`Column` or list names of columns or expressions """ return WindowSpec(self._jspec.partitionBy(_to_java_cols(cols))) def orderBy(self, *cols: Union["ColumnOrName", List["ColumnOrName_"]]) -> "WindowSpec": """ Defines the ordering columns in a :class:`WindowSpec`. .. versionadded:: 1.4.0 Parameters ---------- cols : str, :class:`Column` or list names of columns or expressions """ return WindowSpec(self._jspec.orderBy(_to_java_cols(cols))) def rowsBetween(self, start: int, end: int) -> "WindowSpec": """ Defines the frame boundaries, from `start` (inclusive) to `end` (inclusive). Both `start` and `end` are relative positions from the current row. For example, "0" means "current row", while "-1" means the row before the current row, and "5" means the fifth row after the current row. We recommend users use ``Window.unboundedPreceding``, ``Window.unboundedFollowing``, and ``Window.currentRow`` to specify special boundary values, rather than using integral values directly. .. versionadded:: 1.4.0 Parameters ---------- start : int boundary start, inclusive. The frame is unbounded if this is ``Window.unboundedPreceding``, or any value less than or equal to max(-sys.maxsize, -9223372036854775808). end : int boundary end, inclusive. The frame is unbounded if this is ``Window.unboundedFollowing``, or any value greater than or equal to min(sys.maxsize, 9223372036854775807). """ if start <= Window._PRECEDING_THRESHOLD: start = Window.unboundedPreceding if end >= Window._FOLLOWING_THRESHOLD: end = Window.unboundedFollowing return WindowSpec(self._jspec.rowsBetween(start, end)) def rangeBetween(self, start: int, end: int) -> "WindowSpec": """ Defines the frame boundaries, from `start` (inclusive) to `end` (inclusive). Both `start` and `end` are relative from the current row. For example, "0" means "current row", while "-1" means one off before the current row, and "5" means the five off after the current row. We recommend users use ``Window.unboundedPreceding``, ``Window.unboundedFollowing``, and ``Window.currentRow`` to specify special boundary values, rather than using integral values directly. .. versionadded:: 1.4.0 Parameters ---------- start : int boundary start, inclusive. The frame is unbounded if this is ``Window.unboundedPreceding``, or any value less than or equal to max(-sys.maxsize, -9223372036854775808). end : int boundary end, inclusive. The frame is unbounded if this is ``Window.unboundedFollowing``, or any value greater than or equal to min(sys.maxsize, 9223372036854775807). """ if start <= Window._PRECEDING_THRESHOLD: start = Window.unboundedPreceding if end >= Window._FOLLOWING_THRESHOLD: end = Window.unboundedFollowing return WindowSpec(self._jspec.rangeBetween(start, end)) def _test() -> None: import doctest from pyspark.sql import SparkSession import pyspark.sql.window globs = pyspark.sql.window.__dict__.copy() spark = SparkSession.builder.master("local[4]").appName("sql.window tests").getOrCreate() globs["spark"] = spark (failure_count, test_count) = doctest.testmod( pyspark.sql.window, globs=globs, optionflags=doctest.NORMALIZE_WHITESPACE ) spark.stop() if failure_count: sys.exit(-1) if __name__ == "__main__": _test()

import re from subprocess import Popen, PIPE import sys # Super hacky but easier to do than calling Keystone and Heat's APIs process = Popen(('heat', 'stack-show', 'overcloud'), stdout=PIPE, stderr=PIPE) output = process.stdout.read() # If we're in a HA mode (i.e. more than one controller), make sure the # NtpServer parameters are set. controller_count = int(re.search(r'"Controller-[^":]*::count"\s*:\s*"([^"]*)"', output).group(1)) if controller_count > 1: print "This is a HA setup, checking whether NTP is configured." ntp_servers = re.findall(r'"(Controller|Compute)-[^":]*::NtpServer"\s*:\s*"([^"]*)"', output) if all(t[1] for t in ntp_servers): print "SUCCESS: Controller and Compute nodes are configured with NTP." else: print "ERROR: NTP server is not configured for Controller or Compute nodes!" sys.exit(1) else: print "SUCESS: This is not a HA setup, we don't need NTP configured."

""" Provides BaseConfig - a class that makes a config file act like a dictionary myconf = BaseConfig("myfile.ini") val = myconf["mysection"]["mykey"] for each value you read, it tries to return int, failing this float, failing this returns bool for special string values 'true' / 'false' (case insensitive test), failing this returns string added feature is that if the value does not exist in the config, then you get None instead of an exception Another added feature is that in any string value, you can have a substring which is substituted using another variable, in the format {{var:[section]key}}. Substitutions also include other substitutions. Documenting by example: [mysection] topdir=/some/path [othersection] dir1={{var:[mysection]topdir}}/some/subdirectory dir2={{var:[othersection]dir1}}/bar It is entirely the user's responsibility not to set up loops when doing this. You can also have expression substitutions, in the format {{eval:python_code}} e.g. {{eval:1+1}}. These are evaluated with eval. They do not have to return a string type, although in that case they should be constitute the whole of the value as otherwise there will be an error from concatenating a string with another type. Expression substitutions are evaluated after variable substitutions. Another added feature is compulsory variables. The presence of these variables will be checked for at the time that the config is read, and an exception raised if not. The compulsory variable section is empty in this class, but may be overridden to useful effect in a subclass. Variables can be overridden via environment vars called CONFIG__<section>__<key> e.g. in the example above setting CONFIG__mysection__topdir=/some/other/path will override any value in the file and will also find its way into any substitutions """ import ConfigParser import sys import os import time import re import settings class ConfigSection(dict): """ A class to make a section act as a dictionary. This class is unlikely to be instantiated directly by calling code. """ _varSubsRe = re.compile("\$\(([a-zA-Z_]+)\:(.*?)\)") _evalSubsRe = re.compile("\{\{eval:(.*?)\}\}") def __init__(self, config=None, section=None, parent=None): d = super(ConfigSection, self) d.__init__() self.parent = parent # used for substitutions self.section = section if config: for opt in config.options(section): value = config.get(section, opt) d.__setitem__(opt, value) def __getitem__(self, key): return self.lookup(key) def lookup(self, key, default=None): """ Look up a single key, doing any substitutions as described in the module-level docstring. """ value = None if self.section: try: value = os.environ["CONFIG__%s__%s" % (self.section, key)] except KeyError: pass if value == None: d = super(ConfigSection, self) try: value = d.__getitem__(key) except KeyError: pass if value != None: return self.mapValue(value) else: return default def mapValue(self, value): """ map a string value from the config file to something that has potentially different type and also has the special tokens substituted """ if not isinstance(value, str): return value try: return int(value) except ValueError: pass try: return float(value) except ValueError: pass upper = value.upper() if upper == "TRUE": return True if upper == "FALSE": return False if value == "None": return None value = self.doSubs(value, self.parent) return value def getVarSub(self, config, section, key): """ get substitution text that will be used to replace a {{var:[section]key}} token - i.e. the variable referred to or else the empty string """ if config: try: return config[section][key] except KeyError: pass return "" def doSub(self, str_, matchobj, sub): """ Given a string, a re.match object and a substitution value, return the result of substituting it. The substitution value should normally be a string, but in the case where the match constitutes the whole string, then just the substitution value itself, so it can then be another data type. """ string1 = str_[ : matchobj.start()] string2 = str_[matchobj.end() : ] if (not string1) and (not string2): return sub return string1 + sub + string2 def doSubs(self, str_, config): """ Given a string and a config object, return a revised value after expanding all special tokens (i.e. if none are found then just get the original string back) """ while True: m = self._varSubsRe.search(str_) if not m: break section = m.group(1) key = m.group(2) sub = self.getVarSub(config, section, key) str_ = self.doSub(str_, m, sub) while isinstance(str_, str): m = self._evalSubsRe.search(str_) if not m: break code = m.group(1) try: sub = eval(code) except: sub = "" str_ = self.doSub(str_, m, sub) return str_ class BaseConfig(dict): """ See module-level doc for details. Note not "AbstractConfig" - this can meaningfully be instantiated, although in fact GlobalConfig and DatasetConfig do subclass it to add extra functionality. """ compulsoryVars = [] def __init__(self, config_file_path, missing_ok = False): """ Instantiate based on given path to config file """ self.d = super(BaseConfig, self) self.d.__init__() self.config_file_path = config_file_path self.missing_ok = missing_ok self.settings = [] self.reread() def __getitem__(self, key): """ Return a ConfigSection object based on the specified section of the file (or an empty ConfigSection if none) """ if not self.d.has_key(key): self.d.__setitem__(key, ConfigSection()) # create an empty section return self.d.__getitem__(key) def _readConfig(self, config): retval = config.read(self.config_file_path) if not retval and not self.missing_ok: raise RuntimeError("Could not read config file %s" % self.config_file_path) def reread(self): """ Unconditionally reread the config file. Returns nothing if file disappeared. """ if not os.path.exists(self.config_file_path): return self.clear() config = ConfigParser.ConfigParser() self._readConfig(config) for section in config.sections(): self.d.__setitem__(section, ConfigSection(config, section, parent=self)) # go through the default settings and update the config with the # defaults if none have been set so far for s in self.settings: if not self.checkSet(s[0] + "." + s[1]): if not config.has_section(s[0]): config.add_section(s[0]) self.d.__setitem__(s[0], ConfigSection(config, s[0], parent=self)) self.set(s[0] + "." + s[1], s[2]) self.time_last_read = time.time() self.checkCompulsoryVars() def readDefaults(self): ''' Read global default values from python settings.py file ''' self.settings = [] defaults = dir(settings) for default in defaults: if not default.startswith("__"): c = getattr(settings, default) d = default.split("_") for k in c: e = d[0] self.settings.append((e, k, c[k])) def checkCompulsoryVars(self): """ Raise an exception if any compulsory variable does not exist or has wrong type. Note that there are no compulsory variables except where a subclass (e.g. GlobalConfig / DatasetConfig) defines some. """ for sect, varnames in self.compulsoryVars: s = self[sect] for v in varnames: if isinstance(v, str): varname, vartype = v, None else: varname, vartype = v if varname not in s: raise Exception("Compulsory variable %s::%s not in %s" % (sect, varname, self.config_file_path)) value = s[varname] type_ = type(value) if vartype and not isinstance(value, vartype): raise Exception("Compulsory variable %s::%s in %s has type %s (value %s), should be %s" % (sect, varname, self.config_file_path, type_, value, vartype)) def rereadIfUpdated(self): """ Re-reads the config file, if necessary. Return value is whether it actually reread or not """ # note: duplicates a test in FileUtils but prefer not to depend on that module here if not os.path.exists(self.config_file_path): # config has been deleted, maybe intentionally, so don't reread return False mtime = os.path.getmtime(self.config_file_path) if mtime + 1 > self.time_last_read: self.reread() return True else: return False # set a value for a key def set(self, key, value): try: sk = key.split(".") a = self.d.__getitem__(sk[0]) #b = a[sk[1]] a[sk[1]] = value self.d.__setitem__(sk[0], a); except Exception, ex: print str(ex) # get the value for a key def get(self, key): b = None try: sk = key.split(".") a = self.d.__getitem__(sk[0]) b = a[sk[1]] except Exception, ex: print str(ex) return b # check if a key is set and it has # somesort of value def checkSet(self, key): try: a = self.get(key) if a: return True return False except: return False # if a keys is set (with the appropriate value), # then ensure the other # relavent keys are set def checkSetIf(self, key, val, keys): rv = [] if self.checkSet(key) == True and self.get(key) != val: for k in keys: if self.checkSet(k) == False: rv.append(k) if len(rv) == 0: return None return rv return None def dump(self, stream = sys.stdout): """ For debugging. """ stream.write("\n===Config dump===\n") stream.write("Filename = %s\n" % self.config_file_path) sections = self.keys() sections.sort() for section in sections: s = self[section] stream.write("[%s]\n" % section) keys = s.keys() keys.sort() for k in keys: stream.write(" %s = %s (%s)\n" % (k, s[k], type(s[k]).__name__)) stream.write("===End of config dump===\n\n") if __name__ == '__main__': for file in ["../conf/dataset_hadgem2_2xco2.ini", "../conf/global.ini"]: a = BaseConfig(file) # main test - can we dump the config a.dump() print "these should be None:" print a["asdadsasklejklj"]["adsfasdf"] for sect in a: print a[sect]["asdfasdfasdfad"] # test we can put stuff to existing and non-existing section print "Put test:" sects = [a.keys()[0], "mysect"] for s in sects: for k in ["username", "mykey"]: print s, k, a[s][k], a[s][k] = "foo" print a[s][k] print "Reread test:" # rereading the config file will wipe the value that we wrote, but we are calling # rereadIfUpdated(), so it will only happen if the file modification time is updated a["rsync"]["cmd"] = "FOO" print a["rsync"]["cmd"] a.rereadIfUpdated() print a["rsync"]["cmd"] os.system("touch %s" % file) a.rereadIfUpdated() print a["rsync"]["cmd"]

import pytest from selenium.webdriver.common.by import By @pytest.mark.xfail_safari def test_should_fire_click_event_when_clicking(driver, pages): pages.load("javascriptPage.html") _click_on_element_which_records_events(driver) _assert_event_fired(driver, "click") @pytest.mark.xfail_safari def test_should_fire_mouse_down_event_when_clicking(driver, pages): pages.load("javascriptPage.html") _click_on_element_which_records_events(driver) _assert_event_fired(driver, "mousedown") @pytest.mark.xfail_safari def test_should_fire_mouse_up_event_when_clicking(driver, pages): pages.load("javascriptPage.html") _click_on_element_which_records_events(driver) _assert_event_fired(driver, "mouseup") @pytest.mark.xfail_safari def test_should_issue_mouse_down_events(driver, pages): pages.load("javascriptPage.html") driver.find_element(By.ID, "mousedown").click() result = driver.find_element(By.ID, "result").text assert result == "mouse down" @pytest.mark.xfail_safari def test_should_issue_click_events(driver, pages): pages.load("javascriptPage.html") driver.find_element(By.ID, "mouseclick").click() result = driver.find_element(By.ID, "result").text assert result == "mouse click" @pytest.mark.xfail_safari def test_should_issue_mouse_up_events(driver, pages): pages.load("javascriptPage.html") driver.find_element(By.ID, "mouseup").click() result = driver.find_element(By.ID, "result").text assert result == "mouse up" @pytest.mark.xfail_safari def test_mouse_events_should_bubble_up_to_containing_elements(driver, pages): pages.load("javascriptPage.html") driver.find_element(By.ID, "child").click() result = driver.find_element(By.ID, "result").text assert result == "mouse down" @pytest.mark.xfail_safari def test_should_emit_on_change_events_when_selecting_elements(driver, pages): pages.load("javascriptPage.html") select = driver.find_element(By.ID, 'selector') options = select.find_elements(By.TAG_NAME, 'option') initialTextValue = driver.find_element(By.ID, "result").text select.click() assert driver.find_element(By.ID, "result").text == initialTextValue options[1].click() assert driver.find_element(By.ID, "result").text == "bar" @pytest.mark.xfail_safari def test_should_emit_on_change_events_when_changing_the_state_of_acheckbox(driver, pages): pages.load("javascriptPage.html") checkbox = driver.find_element(By.ID, "checkbox") checkbox.click() assert driver.find_element(By.ID, "result").text == "checkbox thing" def test_should_emit_click_event_when_clicking_on_atext_input_element(driver, pages): pages.load("javascriptPage.html") clicker = driver.find_element(By.ID, "clickField") clicker.click() assert clicker.get_attribute("value") == "Clicked" @pytest.mark.xfail_safari def test_clearing_an_element_should_cause_the_on_change_handler_to_fire(driver, pages): pages.load("javascriptPage.html") element = driver.find_element(By.ID, "clearMe") element.clear() result = driver.find_element(By.ID, "result") assert result.text == "Cleared" # TODO Currently Failing and needs fixing # def test_sending_keys_to_another_element_should_cause_the_blur_event_to_fire(driver, pages): # pages.load("javascriptPage.html") # element = driver.find_element(By.ID, "theworks") # element.send_keys("foo") # element2 = driver.find_element(By.ID, "changeable") # element2.send_keys("bar") # _assertEventFired(driver, "blur") # TODO Currently Failing and needs fixing # def test_sending_keys_to_an_element_should_cause_the_focus_event_to_fire(driver, pages): # pages.load("javascriptPage.html") # element = driver.find_element(By.ID, "theworks") # element.send_keys("foo") # _assertEventFired(driver, "focus") def _click_on_element_which_records_events(driver): driver.find_element(By.ID, "plainButton").click() def _assert_event_fired(driver, eventName): result = driver.find_element(By.ID, "result") text = result.text assert eventName in text, "No " + eventName + " fired: " + text

from ez_setup import use_setuptools use_setuptools() from setuptools import setup, find_packages extra = {} try: from nowin_core.scripts import setup_cmd extra['cmdclass'] = { 'initdb': setup_cmd.InitdbCommand, 'shell': setup_cmd.ShellCommand } except ImportError: pass tests_require = [ 'mock', 'pytest', 'pytest-cov', 'pytest-xdist', 'pytest-capturelog', 'pytest-mock', ] setup( name='nowin_core', packages=find_packages(), install_requires=[ 'psutil', 'SQLAlchemy', 'zope.sqlalchemy', 'transaction', 'nose', 'PyYaml', 'Twisted', 'zope.sqlalchemy', ], tests_require=[ 'nose-cov' ], extras_require=dict( tests=tests_require, ), **extra )

from __future__ import unicode_literals from django.conf import settings from django.db import migrations, models import django.db.models.deletion class Migration(migrations.Migration): dependencies = [ migrations.swappable_dependency(settings.AUTH_USER_MODEL), ('pastebin', '0007_auto_20170129_1536'), ] operations = [ migrations.CreateModel( name='UserPasteStats', fields=[ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), ('paste_count', models.IntegerField(verbose_name='paste count')), ('bio', models.TextField()), ('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)), ], ), ]

from __future__ import unicode_literals from django.db import migrations, models class Migration(migrations.Migration): dependencies = [ ('topics', '0083_auto_20171019_0024'), ] operations = [ migrations.CreateModel( name='ClassroomResource', fields=[ ('id', models.AutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), ('slug', models.SlugField(max_length=80, unique=True)), ('description', models.CharField(max_length=100)), ], ), migrations.RemoveField( model_name='lesson', name='classroom_resources', ), migrations.AddField( model_name='lesson', name='classroom_resources', field=models.ManyToManyField(to='topics.ClassroomResource'), ), ]

"""Timeseries plotting functions.""" from __future__ import division import numpy as np import pandas as pd from scipy import stats, interpolate import matplotlib as mpl import matplotlib.pyplot as plt import warnings from .external.six import string_types from . import utils from . import algorithms as algo from .palettes import color_palette __all__ = ["tsplot"] def tsplot(data, time=None, unit=None, condition=None, value=None, err_style="ci_band", ci=68, interpolate=True, color=None, estimator=np.mean, n_boot=5000, err_palette=None, err_kws=None, legend=True, ax=None, **kwargs): """Plot one or more timeseries with flexible representation of uncertainty. This function is intended to be used with data where observations are nested within sampling units that were measured at multiple timepoints. It can take data specified either as a long-form (tidy) DataFrame or as an ndarray with dimensions (unit, time) The interpretation of some of the other parameters changes depending on the type of object passed as data. Parameters ---------- data : DataFrame or ndarray Data for the plot. Should either be a "long form" dataframe or an array with dimensions (unit, time, condition). In both cases, the condition field/dimension is optional. The type of this argument determines the interpretation of the next few parameters. When using a DataFrame, the index has to be sequential. time : string or series-like Either the name of the field corresponding to time in the data DataFrame or x values for a plot when data is an array. If a Series, the name will be used to label the x axis. unit : string Field in the data DataFrame identifying the sampling unit (e.g. subject, neuron, etc.). The error representation will collapse over units at each time/condition observation. This has no role when data is an array. value : string Either the name of the field corresponding to the data values in the data DataFrame (i.e. the y coordinate) or a string that forms the y axis label when data is an array. condition : string or Series-like Either the name of the field identifying the condition an observation falls under in the data DataFrame, or a sequence of names with a length equal to the size of the third dimension of data. There will be a separate trace plotted for each condition. If condition is a Series with a name attribute, the name will form the title for the plot legend (unless legend is set to False). err_style : string or list of strings or None Names of ways to plot uncertainty across units from set of {ci_band, ci_bars, boot_traces, boot_kde, unit_traces, unit_points}. Can use one or more than one method. ci : float or list of floats in [0, 100] or "sd" or None Confidence interval size(s). If a list, it will stack the error plots for each confidence interval. If ``"sd"``, show standard deviation of the observations instead of boostrapped confidence intervals. Only relevant for error styles with "ci" in the name. interpolate : boolean Whether to do a linear interpolation between each timepoint when plotting. The value of this parameter also determines the marker used for the main plot traces, unless marker is specified as a keyword argument. color : seaborn palette or matplotlib color name or dictionary Palette or color for the main plots and error representation (unless plotting by unit, which can be separately controlled with err_palette). If a dictionary, should map condition name to color spec. estimator : callable Function to determine central tendency and to pass to bootstrap must take an ``axis`` argument. n_boot : int Number of bootstrap iterations. err_palette : seaborn palette Palette name or list of colors used when plotting data for each unit. err_kws : dict, optional Keyword argument dictionary passed through to matplotlib function generating the error plot, legend : bool, optional If ``True`` and there is a ``condition`` variable, add a legend to the plot. ax : axis object, optional Plot in given axis; if None creates a new figure kwargs : Other keyword arguments are passed to main plot() call Returns ------- ax : matplotlib axis axis with plot data Examples -------- Plot a trace with translucent confidence bands: .. plot:: :context: close-figs >>> import numpy as np; np.random.seed(22) >>> import seaborn as sns; sns.set(color_codes=True) >>> x = np.linspace(0, 15, 31) >>> data = np.sin(x) + np.random.rand(10, 31) + np.random.randn(10, 1) >>> ax = sns.tsplot(data=data) Plot a long-form dataframe with several conditions: .. plot:: :context: close-figs >>> gammas = sns.load_dataset("gammas") >>> ax = sns.tsplot(time="timepoint", value="BOLD signal", ... unit="subject", condition="ROI", ... data=gammas) Use error bars at the positions of the observations: .. plot:: :context: close-figs >>> ax = sns.tsplot(data=data, err_style="ci_bars", color="g") Don't interpolate between the observations: .. plot:: :context: close-figs >>> import matplotlib.pyplot as plt >>> ax = sns.tsplot(data=data, err_style="ci_bars", interpolate=False) Show multiple confidence bands: .. plot:: :context: close-figs >>> ax = sns.tsplot(data=data, ci=[68, 95], color="m") Show the standard deviation of the observations: .. plot:: :context: close-figs >>> ax = sns.tsplot(data=data, ci="sd") Use a different estimator: .. plot:: :context: close-figs >>> ax = sns.tsplot(data=data, estimator=np.median) Show each bootstrap resample: .. plot:: :context: close-figs >>> ax = sns.tsplot(data=data, err_style="boot_traces", n_boot=500) Show the trace from each sampling unit: .. plot:: :context: close-figs >>> ax = sns.tsplot(data=data, err_style="unit_traces") """ msg = ( "The `tsplot` function is deprecated and will be removed in a future " "release. Please update your code to use the new `lineplot` function." ) warnings.warn(msg, UserWarning) # Sort out default values for the parameters if ax is None: ax = plt.gca() if err_kws is None: err_kws = {} # Handle different types of input data if isinstance(data, pd.DataFrame): xlabel = time ylabel = value # Condition is optional if condition is None: condition = pd.Series(1, index=data.index) legend = False legend_name = None n_cond = 1 else: legend = True and legend legend_name = condition n_cond = len(data[condition].unique()) else: data = np.asarray(data) # Data can be a timecourse from a single unit or # several observations in one condition if data.ndim == 1: data = data[np.newaxis, :, np.newaxis] elif data.ndim == 2: data = data[:, :, np.newaxis] n_unit, n_time, n_cond = data.shape # Units are experimental observations. Maybe subjects, or neurons if unit is None: units = np.arange(n_unit) unit = "unit" units = np.repeat(units, n_time * n_cond) ylabel = None # Time forms the xaxis of the plot if time is None: times = np.arange(n_time) else: times = np.asarray(time) xlabel = None if hasattr(time, "name"): xlabel = time.name time = "time" times = np.tile(np.repeat(times, n_cond), n_unit) # Conditions split the timeseries plots if condition is None: conds = range(n_cond) legend = False if isinstance(color, dict): err = "Must have condition names if using color dict." raise ValueError(err) else: conds = np.asarray(condition) legend = True and legend if hasattr(condition, "name"): legend_name = condition.name else: legend_name = None condition = "cond" conds = np.tile(conds, n_unit * n_time) # Value forms the y value in the plot if value is None: ylabel = None else: ylabel = value value = "value" # Convert to long-form DataFrame data = pd.DataFrame(dict(value=data.ravel(), time=times, unit=units, cond=conds)) # Set up the err_style and ci arguments for the loop below if isinstance(err_style, string_types): err_style = [err_style] elif err_style is None: err_style = [] if not hasattr(ci, "__iter__"): ci = [ci] # Set up the color palette if color is None: current_palette = utils.get_color_cycle() if len(current_palette) < n_cond: colors = color_palette("husl", n_cond) else: colors = color_palette(n_colors=n_cond) elif isinstance(color, dict): colors = [color[c] for c in data[condition].unique()] else: try: colors = color_palette(color, n_cond) except ValueError: color = mpl.colors.colorConverter.to_rgb(color) colors = [color] * n_cond # Do a groupby with condition and plot each trace c = None for c, (cond, df_c) in enumerate(data.groupby(condition, sort=False)): df_c = df_c.pivot(unit, time, value) x = df_c.columns.values.astype(np.float) # Bootstrap the data for confidence intervals if "sd" in ci: est = estimator(df_c.values, axis=0) sd = np.std(df_c.values, axis=0) cis = [(est - sd, est + sd)] boot_data = df_c.values else: boot_data = algo.bootstrap(df_c.values, n_boot=n_boot, axis=0, func=estimator) cis = [utils.ci(boot_data, v, axis=0) for v in ci] central_data = estimator(df_c.values, axis=0) # Get the color for this condition color = colors[c] # Use subroutines to plot the uncertainty for style in err_style: # Allow for null style (only plot central tendency) if style is None: continue # Grab the function from the global environment try: plot_func = globals()["_plot_%s" % style] except KeyError: raise ValueError("%s is not a valid err_style" % style) # Possibly set up to plot each observation in a different color if err_palette is not None and "unit" in style: orig_color = color color = color_palette(err_palette, len(df_c.values)) # Pass all parameters to the error plotter as keyword args plot_kwargs = dict(ax=ax, x=x, data=df_c.values, boot_data=boot_data, central_data=central_data, color=color, err_kws=err_kws) # Plot the error representation, possibly for multiple cis for ci_i in cis: plot_kwargs["ci"] = ci_i plot_func(**plot_kwargs) if err_palette is not None and "unit" in style: color = orig_color # Plot the central trace kwargs.setdefault("marker", "" if interpolate else "o") ls = kwargs.pop("ls", "-" if interpolate else "") kwargs.setdefault("linestyle", ls) label = cond if legend else "_nolegend_" ax.plot(x, central_data, color=color, label=label, **kwargs) if c is None: raise RuntimeError("Invalid input data for tsplot.") # Pad the sides of the plot only when not interpolating ax.set_xlim(x.min(), x.max()) x_diff = x[1] - x[0] if not interpolate: ax.set_xlim(x.min() - x_diff, x.max() + x_diff) # Add the plot labels if xlabel is not None: ax.set_xlabel(xlabel) if ylabel is not None: ax.set_ylabel(ylabel) if legend: ax.legend(loc=0, title=legend_name) return ax # Subroutines for tsplot errorbar plotting # ---------------------------------------- def _plot_ci_band(ax, x, ci, color, err_kws, **kwargs): """Plot translucent error bands around the central tendancy.""" low, high = ci if "alpha" not in err_kws: err_kws["alpha"] = 0.2 ax.fill_between(x, low, high, facecolor=color, **err_kws) def _plot_ci_bars(ax, x, central_data, ci, color, err_kws, **kwargs): """Plot error bars at each data point.""" for x_i, y_i, (low, high) in zip(x, central_data, ci.T): ax.plot([x_i, x_i], [low, high], color=color, solid_capstyle="round", **err_kws) def _plot_boot_traces(ax, x, boot_data, color, err_kws, **kwargs): """Plot 250 traces from bootstrap.""" err_kws.setdefault("alpha", 0.25) err_kws.setdefault("linewidth", 0.25) if "lw" in err_kws: err_kws["linewidth"] = err_kws.pop("lw") ax.plot(x, boot_data.T, color=color, label="_nolegend_", **err_kws) def _plot_unit_traces(ax, x, data, ci, color, err_kws, **kwargs): """Plot a trace for each observation in the original data.""" if isinstance(color, list): if "alpha" not in err_kws: err_kws["alpha"] = .5 for i, obs in enumerate(data): ax.plot(x, obs, color=color[i], label="_nolegend_", **err_kws) else: if "alpha" not in err_kws: err_kws["alpha"] = .2 ax.plot(x, data.T, color=color, label="_nolegend_", **err_kws) def _plot_unit_points(ax, x, data, color, err_kws, **kwargs): """Plot each original data point discretely.""" if isinstance(color, list): for i, obs in enumerate(data): ax.plot(x, obs, "o", color=color[i], alpha=0.8, markersize=4, label="_nolegend_", **err_kws) else: ax.plot(x, data.T, "o", color=color, alpha=0.5, markersize=4, label="_nolegend_", **err_kws) def _plot_boot_kde(ax, x, boot_data, color, **kwargs): """Plot the kernal density estimate of the bootstrap distribution.""" kwargs.pop("data") _ts_kde(ax, x, boot_data, color, **kwargs) def _plot_unit_kde(ax, x, data, color, **kwargs): """Plot the kernal density estimate over the sample.""" _ts_kde(ax, x, data, color, **kwargs) def _ts_kde(ax, x, data, color, **kwargs): """Upsample over time and plot a KDE of the bootstrap distribution.""" kde_data = [] y_min, y_max = data.min(), data.max() y_vals = np.linspace(y_min, y_max, 100) upsampler = interpolate.interp1d(x, data) data_upsample = upsampler(np.linspace(x.min(), x.max(), 100)) for pt_data in data_upsample.T: pt_kde = stats.kde.gaussian_kde(pt_data) kde_data.append(pt_kde(y_vals)) kde_data = np.transpose(kde_data) rgb = mpl.colors.ColorConverter().to_rgb(color) img = np.zeros((kde_data.shape[0], kde_data.shape[1], 4)) img[:, :, :3] = rgb kde_data /= kde_data.max(axis=0) kde_data[kde_data > 1] = 1 img[:, :, 3] = kde_data ax.imshow(img, interpolation="spline16", zorder=2, extent=(x.min(), x.max(), y_min, y_max), aspect="auto", origin="lower")

default_app_config = 't4proj.apps.stats.apps.StatsConfig'

PROGRESS_BAR_LENGTH = 40 def generate_loading_string(completed_tasks, total_tasks): """ <percentage completed>% [< -- based on percentage completion>] Completed/Total """ try: fraction_completed = (completed_tasks / total_tasks) except: fraction_completed = 1 # To avoid division by Zero percentage_complete = fraction_completed * 100 dashes = int(PROGRESS_BAR_LENGTH * fraction_completed) blanks = PROGRESS_BAR_LENGTH - dashes bar = "[" + "-" * dashes + ">" + " " * blanks + "]" fraction_display = "%s/%s" % (completed_tasks, total_tasks) loading_string = "%s%% %s %s" % (percentage_complete, bar, fraction_display) return loading_string

import sys import os from xml.etree import ElementTree import json # Import vendor modules from a subdirectory here = os.path.dirname(os.path.realpath(__file__)) sys.path.append(os.path.join(here, "./vendored")) import requests from bs4 import BeautifulSoup import boto3 if os.environ.get("IN_AWS", "false").lower() == "true": from aws_xray_sdk.core import xray_recorder # noqa from aws_xray_sdk.core import patch_all # noqa patch_all() xray_recorder.configure(sampling=False) # Download RSS feed and parse news entries @xray_recorder.capture("get_feed_xml") def get_feed_xml(): url = "http://feeds.feedburner.com/ampparit-uutiset" response = requests.get(url, timeout=5) ns = {"atom": "http://www.w3.org/2005/Atom"} feed = ElementTree.fromstring(response.content) print(f"Feed last updated {feed.find('atom:updated', ns).text}") id_prefix = "id=" entries = [ { "id": entry.find("atom:id", ns).text.split(id_prefix, 1)[1], "title": entry.find("atom:title", ns).text, "updated": entry.find("atom:updated", ns).text, "feed_url": entry.find("atom:link", ns).attrib.get("href"), "author": entry.find("atom:author", ns).find("atom:name", ns).text } for entry in feed.findall("atom:entry", ns) ] print(f"Parsed {len(entries)} items") return entries # Scrape given html to plaintext @xray_recorder.capture("parse_text") def parse_text(html, source): soup = BeautifulSoup(html, "html.parser") print("Parsing content from source " + source) xray_recorder.current_subsegment().put_annotation('source_parser', source) class_parsers = { "Aamulehti": {"css": "content--main"}, "Demokraatti.fi": {"css": "post-content", "parent": "section"}, "Iltalehti": {"css": "article-body"}, "Kainuun Sanomat": {"css": "Teksti"}, "Kaleva": {"css": "article__text"}, "Karjalainen": {"css": "itemBody"}, "Lapin Kansa": {"css": "content--main"}, "Mikrobitti.fi": {"css": "post-content"}, "Mobiili.fi": {"css": "blogcontent"}, "MTV.fi": {"css": "article"}, "Pohjalainen": {"css": "article__full", "parent": "article"}, "Savon Sanomat": {"css": "article__body"}, "Seura": {"css": "content__body"}, "Suomenmaa": {"css": "ArticleText"}, "Talouselämä": {"css": "article-body"}, "Tivi": {"css": "article-body"}, "Verkkouutiset": {"css": "entry-content"} } # Returns all child tags of the parent tag which has a specific css class def children(css, parent="div", child="p"): parent_node = soup.find(parent, class_=css) if parent_node: return parent_node.find_all(child) else: return [] text = "" if source in class_parsers: for e in children(**class_parsers[source]): text += e.get_text() + " " elif source == "Yle": for e in children("yle__article__content") or children("ydd-article__body"): text += e.get_text() + " " elif source == "Uusi Suomi": mess = soup.find("div", class_="field-name-body").find("div", class_="field-item") for script in mess.find_all("script"): script.decompose() for e in mess.find_all("div"): text += e.get_text() + " " elif source in ["Ilta-Sanomat", "Taloussanomat"]: mess = soup.find("div", class_="body") for script in mess.find_all("script"): script.decompose() for script in mess.select(".hidden"): script.decompose() text = mess.get_text() else: print("Fallback to crude parser") for e in soup.find_all("p"): text += e.get_text() + " " print(f"Parsed {len(text)} bytes of plaintext") return text # Fetch page content and return object with parsed plaintext def get_content(item): if item["author"] in ["Kauppalehti"]: print("Dropping unsupported source " + item["author"]) return None try: url = item["feed_url"] xray = xray_recorder.begin_subsegment("get url") response = requests.get(url, timeout=5) xray.put_annotation('html_size', len(response.content)) xray_recorder.end_subsegment() except Exception as e: print(e) xray_recorder.end_subsegment() return None if response.status_code == 404: print("Feed link is stale") return None else: print(f"Fetched {len(response.content)} bytes of HTML from {response.url}") item["content_url"] = response.url item["content"] = parse_text(response.text, item["author"]) item["content_length"] = len(item["content"]) if item["content"] == "": item["content"] = "FAILED_TO_PARSE_CONTENT" return item # Save entries to DynamoDB @xray_recorder.capture("save_to_dynamo") def save_to_dynamo(items): table_name = os.environ.get("CORPUS_TABLE_NAME") table = boto3.resource("dynamodb").Table(table_name) with table.batch_writer() as batch: for item in items: batch.put_item(Item=item) # Lambda entry point @xray_recorder.capture("handler") def handler(event, context): headlines = get_feed_xml() max_items = int(os.environ.get("MAX_HARVESTED_HEADLINES")) corpus_items = list( filter( None.__ne__, [get_content(headline) for headline in headlines[:max_items]] ) ) if not event.get("is_local_dev"): save_to_dynamo(corpus_items) else: print(json.dumps(corpus_items, indent=1)) raise NotImplementedError("Local DynamoDB usage not implemented") # Main function for local testing if __name__ == "__main__": print("Local execution is not completely supported. Please run this in AWS Lambda.") handler({"is_local_dev": True}, {})

import sys sys.path.append("..") import iac.app.libreoffice.calc as localc import iac.app.libreoffice.writer as lowriter import iac.app.gnumeric as gnumeric

from swgpy.object import * def create(kernel): result = Intangible() result.template = "object/draft_schematic/space/engine/shared_engine_overdriver_mk1.iff" result.attribute_template_id = -1 result.stfName("string_id_table","") #### BEGIN MODIFICATIONS #### #### END MODIFICATIONS #### return result

import collections import heapq class Solution: def maxProbability(self, n: int, edges: List[List[int]], succProb: List[float], start: int, end: int) -> float: graph = collections.defaultdict(list) for i, (a, b) in enumerate(edges): graph[a].append((b, i)) graph[b].append((a, i)) prob = [0] * n prob[start] = 1 pq = [(-1, start)] while pq: p, index = heapq.heappop(pq) if index == end: return -p for node, i in graph[index]: if -p * succProb[i] > prob[node]: prob[node] = -p * succProb[i] heapq.heappush(pq, (-prob[node], node)) return 0

import mock import yaml from nailgun import objects from nailgun.openstack.common import jsonutils from nailgun.plugins import attr_plugin from nailgun.test import base def get_config(config): def _get_config(*args): return mock.mock_open(read_data=yaml.dump(config))() return _get_config class BasePluginTest(base.BaseIntegrationTest): TASKS_CONFIG = [ {'priority': 10, 'role': ['controller'], 'type': 'shell', 'parameters': {'cmd': './lbaas_enable.sh', 'timeout': 42}, 'stage': 'post_deployment'}, {'priority': 10, 'role': '*', 'type': 'shell', 'parameters': {'cmd': 'echo all > /tmp/plugin.all', 'timeout': 42}, 'stage': 'pre_deployment'}] def setUp(self): super(BasePluginTest, self).setUp() self.sample_plugin = self.env.get_default_plugin_metadata() self.plugin_env_config = self.env.get_default_plugin_env_config() def create_plugin(self, sample=None, expect_errors=False): sample = sample or self.sample_plugin resp = self.app.post( base.reverse('PluginCollectionHandler'), jsonutils.dumps(sample), headers=self.default_headers, expect_errors=expect_errors ) return resp def delete_plugin(self, plugin_id): resp = self.app.delete( base.reverse('PluginHandler', {'obj_id': plugin_id}), headers=self.default_headers ) return resp def create_cluster(self, nodes=None): nodes = nodes if nodes else [] with mock.patch('nailgun.plugins.attr_plugin.os') as os: with mock.patch('nailgun.plugins.attr_plugin.open', create=True) as f_m: os.access.return_value = True os.path.exists.return_value = True f_m.side_effect = get_config(self.plugin_env_config) self.env.create( release_kwargs={'version': '2014.2-6.0', 'operating_system': 'Ubuntu'}, nodes_kwargs=nodes) return self.env.clusters[0] def default_attributes(self, cluster): resp = self.app.get( base.reverse('ClusterAttributesDefaultsHandler', {'cluster_id': cluster.id}), headers=self.default_headers) return resp def modify_plugin(self, cluster, plugin_name, enabled): editable_attrs = cluster.attributes.editable editable_attrs[plugin_name]['metadata']['enabled'] = enabled resp = self.app.put( base.reverse('ClusterAttributesHandler', {'cluster_id': cluster.id}), jsonutils.dumps({'editable': editable_attrs}), headers=self.default_headers) return resp def enable_plugin(self, cluster, plugin_name): return self.modify_plugin(cluster, plugin_name, True) def disable_plugin(self, cluster, plugin_name): return self.modify_plugin(cluster, plugin_name, False) def get_pre_hooks(self, cluster): with mock.patch('nailgun.plugins.attr_plugin.glob') as glob: glob.glob.return_value = ['/some/path'] with mock.patch('nailgun.plugins.attr_plugin.os') as os: with mock.patch('nailgun.plugins.attr_plugin.open', create=True) as f_m: os.access.return_value = True os.path.exists.return_value = True f_m.side_effect = get_config(self.TASKS_CONFIG) resp = self.app.get( base.reverse('DefaultPrePluginsHooksInfo', {'cluster_id': cluster.id}), headers=self.default_headers) return resp def get_post_hooks(self, cluster): with mock.patch('nailgun.plugins.attr_plugin.os') as os: with mock.patch('nailgun.plugins.attr_plugin.open', create=True) as f_m: os.access.return_value = True os.path.exists.return_value = True f_m.side_effect = get_config(self.TASKS_CONFIG) resp = self.app.get( base.reverse('DefaultPostPluginsHooksInfo', {'cluster_id': cluster.id}), headers=self.default_headers) return resp class TestPluginsApi(BasePluginTest): def test_plugin_created_on_post(self): resp = self.create_plugin() self.assertEqual(resp.status_code, 201) def test_env_create_and_load_env_config(self): self.create_plugin() cluster = self.create_cluster() self.assertIn(self.sample_plugin['name'], cluster.attributes.editable) def test_enable_disable_plugin(self): resp = self.create_plugin() plugin = objects.Plugin.get_by_uid(resp.json['id']) cluster = self.create_cluster() self.assertEqual(plugin.clusters, []) resp = self.enable_plugin(cluster, plugin.name) self.assertEqual(resp.status_code, 200) self.assertIn(cluster, plugin.clusters) resp = self.disable_plugin(cluster, plugin.name) self.assertEqual(resp.status_code, 200) self.assertEqual(plugin.clusters, []) def test_delete_plugin(self): resp = self.create_plugin() del_resp = self.delete_plugin(resp.json['id']) self.assertEqual(del_resp.status_code, 204) def test_update_plugin(self): resp = self.create_plugin() data = resp.json data['package_version'] = '2.0.0' plugin_id = data.pop('id') resp = self.app.put( base.reverse('PluginHandler', {'obj_id': plugin_id}), jsonutils.dumps(data), headers=self.default_headers ) self.assertEqual(resp.status_code, 200) updated_data = resp.json updated_data.pop('id') self.assertEqual(updated_data, data) def test_default_attributes_after_plugin_is_created(self): self.create_plugin() cluster = self.create_cluster() default_attributes = self.default_attributes(cluster) self.assertIn(self.sample_plugin['name'], default_attributes) def test_plugins_multiversioning(self): def create_with_version(version): self.create_plugin(sample=self.env.get_default_plugin_metadata( name='multiversion_plugin', version=version)) for version in ['1.0.0', '2.0.0', '0.0.1']: create_with_version(version) cluster = self.create_cluster() # Create new plugin after environment is created create_with_version('5.0.0') self.enable_plugin(cluster, 'multiversion_plugin') self.assertEqual(len(cluster.plugins), 1) enabled_plugin = cluster.plugins[0] # Should be enabled the newest plugin, # at the moment of environment creation self.assertEqual(enabled_plugin.version, '2.0.0') self.disable_plugin(cluster, 'multiversion_plugin') self.assertEqual(len(cluster.plugins), 0) class TestPrePostHooks(BasePluginTest): def setUp(self): super(TestPrePostHooks, self).setUp() resp = self.create_plugin() self.plugin = attr_plugin.ClusterAttributesPlugin( objects.Plugin.get_by_uid(resp.json['id'])) self.cluster = self.create_cluster([ {'roles': ['controller'], 'pending_addition': True}, {'roles': ['compute'], 'pending_addition': True}]) self.enable_plugin(self.cluster, self.sample_plugin['name']) def test_generate_pre_hooks(self): tasks = self.get_pre_hooks(self.cluster).json upload_file = [t for t in tasks if t['type'] == 'upload_file'] rsync = [t for t in tasks if t['type'] == 'sync'] cmd_tasks = [t for t in tasks if t['type'] == 'shell'] self.assertEqual(len(upload_file), 1) self.assertEqual(len(rsync), 1) self.assertEqual(len(cmd_tasks), 2) for t in tasks: #shoud uid be a string self.assertEqual( sorted(t['uids']), sorted([n.uid for n in self.cluster.nodes])) self.assertTrue(t['fail_on_error']) self.assertEqual(t['diagnostic_name'], self.plugin.full_name) apt_update = [t for t in cmd_tasks if u'apt-get update' in t['parameters']['cmd']] self.assertEqual(len(apt_update), 1) def test_generate_post_hooks(self): tasks = self.get_post_hooks(self.cluster).json self.assertEqual(len(tasks), 1) task = tasks[0] controller_id = [n.uid for n in self.cluster.nodes if 'controller' in n.roles] self.assertEqual(controller_id, task['uids']) self.assertTrue(task['fail_on_error']) self.assertEqual(task['diagnostic_name'], self.plugin.full_name) class TestPluginValidation(BasePluginTest): def test_releases_not_provided(self): sample = { 'name': 'test_name', 'version': '0.1.1', 'fuel_version': ['6.0'], 'title': 'Test plugin', 'package_version': '1.0.0' } resp = self.create_plugin(sample=sample, expect_errors=True) self.assertEqual(resp.status_code, 400) def test_version_is_not_present_in_release_data(self): sample = { 'name': 'test_name', 'version': '0.1.1', 'fuel_version': ['6.0'], 'title': 'Test plugin', 'package_version': '1.0.0', 'releases': [ {'os': 'Ubuntu', 'mode': ['ha', 'multinode']} ] } resp = self.create_plugin(sample=sample, expect_errors=True) self.assertEqual(resp.status_code, 400) def test_plugin_version_is_floating(self): sample = { 'name': 'test_name', 'title': 'Test plugin', 'version': 1.1, 'fuel_version': ['6.0'], 'package_version': '1.0.0', 'releases': [ {'os': 'Ubuntu', 'mode': ['ha', 'multinode'], 'version': '2014.2.1-5.1'} ] } resp = self.create_plugin(sample=sample, expect_errors=True) self.assertEqual(resp.status_code, 400) def test_title_is_not_present(self): sample = { 'name': 'test_name', 'version': '1.1', 'fuel_version': ['6.0'], 'package_version': '1.0.0', 'releases': [ {'os': 'Ubuntu', 'mode': ['multinode'], 'version': '2014.2.1-5.1'} ] } resp = self.create_plugin(sample=sample, expect_errors=True) self.assertEqual(resp.status_code, 400)

import json import os import cloudpickle import sys if __name__ == '__main__': temp_dir = sys.argv[1] with open(os.path.join(temp_dir, "args.pkl"), 'rb') as f: args = cloudpickle.load(f) with open(os.path.join(temp_dir, "target.pkl"), 'rb') as f: target = cloudpickle.load(f) history = target(*args) tf_config = json.loads(os.environ["TF_CONFIG"]) with open(os.path.join(temp_dir, f"history_{tf_config['task']['index']}"), "wb") as f: cloudpickle.dump(history, f)

from unittest import TestCase from testdoubles.utils import bind_function_to_object from tests.common.compat import mock class BindFunctionToObjectTestCase(TestCase): def test_when_binding_a_function_to_an_object_it_is_available_for_the_object_instance(self): def f(self): pass class Obj(object): pass bind_function_to_object(f, Obj) sut = Obj() self.assertTrue(hasattr(sut, 'f'), 'Obj has no attribute f') def test_when_binding_a_function_to_an_object_it_is_callable_on_the_object_instance(self): def f(self): pass class Obj(object): pass bind_function_to_object(f, Obj) sut = Obj() sut.f() def test_when_binding_a_function_to_an_object_then_the_object_is_returned(self): def f(self): pass class Obj(object): pass actual = bind_function_to_object(f, Obj) self.assertEqual(actual, Obj) def test_when_providing_a_non_callable_a_type_error_is_raised(self): class Obj(object): pass with self.assertRaises(TypeError): bind_function_to_object(mock.sentinel, Obj) def test_when_providing_a_non_boundable_function_a_value_error_is_raised(self): def f(): pass class Obj(object): pass with self.assertRaises(ValueError): bind_function_to_object(f, Obj) def test_when_providing_a_non_boundable_function_then_the_value_error_message_is_correct(self): def f(): pass class Obj(object): pass with self.assertRaisesRegexp(ValueError, '%s does not have a self argument' % f): bind_function_to_object(f, Obj)

""" # UI/UX Authoring Tool # @license http://www.apache.org/licenses/LICENSE-2.0 # Author @ Jamil Hussain """ from django.shortcuts import render from .forms import AppCreationForm from .models import (App,ActionLog,Log) from accounts.models import MyUser from django.http import HttpResponseRedirect, Http404 from django.db.models import Count, Min, Sum, Avg from django.utils import timezone def createApp(request, *args, **kwargs): form = AppCreationForm(request.POST or None) if form.is_valid(): form.save() return HttpResponseRedirect("analytics/overview.html") return render(request, "analytics/app.html", {"form": form}) def homeView(request): application_list=App.objects.all() context = { "app_list": application_list } if not request.user.is_authenticated: return HttpResponseRedirect("/accounts/login") else: return render(request, 'analytics/home.html',context) def overviewView(request): actions_logs=ActionLog.objects.all() logs=Log.objects.filter(visit_time__gt=timezone.now()).exclude(event_category__isnull=True).exclude(event_category__exact='').values('visit_time','event_category','event_name','event_action') #gd_total= Log.objects.annotate(total_country=Sum('Log__country')) gb_list= Log.objects.values('country').annotate(Count('country')) # visits=Log.objects.extra({'visit_time' : "date(visit_time)"}).values('visit_time').annotate(Count('visit_time')) device_model=Log.objects.exclude(user_agent__isnull=True).exclude(user_agent__exact='').values('user_agent').distinct() andorid=Log.objects.exclude(user_agent__isnull=True).exclude(user_agent__exact='').filter(user_agent__contains='Android').values('user_agent').count() other = Log.objects.exclude(user_agent__isnull=True).exclude(user_agent__exact='').exclude(user_agent__contains='Android').values('user_agent').count() total_visit= Log.objects.all().count() visits= Log.objects.extra({'vists_date': "date(visit_time)"}).values('vists_date').annotate(count=Count('id')) user=MyUser.objects.all() male = MyUser.objects.filter(gender='male') female = MyUser.objects.filter(gender='female') context = { 'actionlog':actions_logs, 'log': logs, 'gb_total': gb_list, 'user': user, 'male': male, 'female': female, 'visits' : visits, 'total_visit': total_visit, 'device_model': device_model, 'andorid' : andorid, 'other' : other } return render(request, 'analytics/overview.html', context) def screensView(request): context = {} return render(request, 'analytics/screens.html', context) def eventsView(request): context = {} return render(request, 'analytics/events.html', context) def locationsView(request): context = {} return render(request, 'analytics/locations.html', context) def exceptionsView(request): context = {} return render(request, 'analytics/exceptions.html', context)

class BaseFactoryGenerator(): def __init__(self): self.data = None self.namespace = None def init(self, data, namespace): self.data = data self.namespace = namespace def generate_import(self): raise NotImplementedError() def generate(self, data, namespace): raise NotImplementedError() def _generate_to_json(self): raise NotImplementedError() def _generate_from_json(self): raise NotImplementedError()

"""Actions for the help menu. """ # Authors: Gael Varoquaux <gael.varoquaux[at]normalesup.org> # Prabhu Ramachandran # Copyright (c) 2007-2008, Enthought, Inc. # License: BSD Style. # Standard library imports. from os import path import os import sys from os.path import join, dirname # Enthought library imports. from pyface.action.api import Action from traitsui.api import auto_close_message # Local imports import mayavi.api from mayavi.core.common import error from mayavi.preferences.api import preference_manager # To find the html documentation directory, first look under the # standard place. If that directory doesn't exist, assume you # are running from the source. local_dir = dirname(mayavi.api.__file__) HTML_DIR = join(local_dir, 'html') if not path.exists(HTML_DIR): HTML_DIR = join(dirname(dirname(local_dir)), 'build', 'docs', 'html', 'mayavi') if not path.exists(HTML_DIR): HTML_DIR = None def browser_open(url): if sys.platform == 'darwin': os.system('open %s &' % url) else: import webbrowser if webbrowser._iscommand('firefox') and \ preference_manager.root.open_help_in_light_browser: # Firefox is installed, let's use it, we know how to make it # chromeless. firefox = webbrowser.get('firefox') firefox._invoke(['-chrome', url], remote=False, autoraise=True) else: webbrowser.open(url, autoraise=1) def open_help_index(): """ Open the mayavi user manual index in a browser. """ # If the HTML_DIR was found, bring up the documentation in a # web browser. Otherwise, bring up an error message. if HTML_DIR: auto_close_message("Opening help in web browser...") browser_open(join(HTML_DIR, 'index.html')) else: error("Could not find the user guide in your installation " \ "or the source tree.") def open_tvtk_docs(): """ Open the TVTK class browser. """ from tvtk.tools.tvtk_doc import TVTKClassChooser TVTKClassChooser().edit_traits() ###################################################################### # `HelpIndex` class. ###################################################################### class HelpIndex(Action): """ An action that pop up the help in a browser. """ tooltip = "The Mayavi2 user guide" description = "The Mayavi2 user guide" ########################################################################### # 'Action' interface. ########################################################################### def perform(self, event): """ Performs the action. """ open_help_index() ###################################################################### # `TVTKClassBrowser` class. ###################################################################### class TVTKClassBrowser(Action): """ An action that opens the tvtk interactive class browser. """ tooltip = "The TVTK interactive class browser" description = "The TVTK interactive class browser" ########################################################################### # 'Action' interface. ########################################################################### def perform(self, event): """ Performs the action. """ open_tvtk_docs()

""" Script to scan Zephyr include directories and emit system call and subsystem metadata System calls require a great deal of boilerplate code in order to implement completely. This script is the first step in the build system's process of auto-generating this code by doing a text scan of directories containing C or header files, and building up a database of system calls and their function call prototypes. This information is emitted to a generated JSON file for further processing. This script also scans for struct definitions such as __subsystem and __net_socket, emitting a JSON dictionary mapping tags to all the struct declarations found that were tagged with them. If the output JSON file already exists, its contents are checked against what information this script would have outputted; if the result is that the file would be unchanged, it is not modified to prevent unnecessary incremental builds. """ import sys import re import argparse import os import json regex_flags = re.MULTILINE | re.VERBOSE syscall_regex = re.compile(r''' __syscall\s+ # __syscall attribute, must be first ([^(]+) # type and name of system call (split later) [(] # Function opening parenthesis ([^)]*) # Arg list (split later) [)] # Closing parenthesis ''', regex_flags) struct_tags = ["__subsystem", "__net_socket"] tagged_struct_decl_template = r''' %s\s+ # tag, must be first struct\s+ # struct keyword is next ([^{]+) # name of subsystem [{] # Open curly bracket ''' def tagged_struct_update(target_list, tag, contents): regex = re.compile(tagged_struct_decl_template % tag, regex_flags) items = [mo.groups()[0].strip() for mo in regex.finditer(contents)] target_list.extend(items) def analyze_headers(multiple_directories): syscall_ret = [] tagged_ret = {} for tag in struct_tags: tagged_ret[tag] = [] for base_path in multiple_directories: for root, dirs, files in os.walk(base_path, topdown=True): dirs.sort() files.sort() for fn in files: # toolchain/common.h has the definitions of these tags which we # don't want to trip over path = os.path.join(root, fn) if (not (path.endswith(".h") or path.endswith(".c")) or path.endswith(os.path.join(os.sep, 'toolchain', 'common.h'))): continue with open(path, "r", encoding="utf-8") as fp: contents = fp.read() try: syscall_result = [(mo.groups(), fn) for mo in syscall_regex.finditer(contents)] for tag in struct_tags: tagged_struct_update(tagged_ret[tag], tag, contents) except Exception: sys.stderr.write("While parsing %s\n" % fn) raise syscall_ret.extend(syscall_result) return syscall_ret, tagged_ret def update_file_if_changed(path, new): if os.path.exists(path): with open(path, 'r') as fp: old = fp.read() if new != old: with open(path, 'w') as fp: fp.write(new) else: with open(path, 'w') as fp: fp.write(new) def parse_args(): global args parser = argparse.ArgumentParser( description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter) parser.add_argument("-i", "--include", required=True, action='append', help='''include directories recursively scanned for .h files. Can be specified multiple times: -i topdir1 -i topdir2 ...''') parser.add_argument( "-j", "--json-file", required=True, help="Write system call prototype information as json to file") parser.add_argument( "-t", "--tag-struct-file", required=True, help="Write tagged struct name information as json to file") args = parser.parse_args() def main(): parse_args() syscalls, tagged = analyze_headers(args.include) # Only write json files if they don't exist or have changes since # they will force an incremental rebuild. syscalls_in_json = json.dumps( syscalls, indent=4, sort_keys=True ) update_file_if_changed(args.json_file, syscalls_in_json) tagged_struct_in_json = json.dumps( tagged, indent=4, sort_keys=True ) update_file_if_changed(args.tag_struct_file, tagged_struct_in_json) if __name__ == "__main__": main()

""" To run this script, type python buyLotsOfFruit.py Once you have correctly implemented the buyLotsOfFruit function, the script should produce the output: Cost of [('apples', 2.0), ('pears', 3.0), ('limes', 4.0)] is 12.25 """ fruitPrices = {'apples':2.00, 'oranges': 1.50, 'pears': 1.75, 'limes':0.75, 'strawberries':1.00} def buyLotsOfFruit(orderList): """ orderList: List of (fruit, numPounds) tuples Returns cost of order """ totalCost = 0.0 for fruit, qty in orderList: if fruitPrices[fruit] != None: totalCost += fruitPrices[fruit] * qty return totalCost # Main Method if __name__ == '__main__': "This code runs when you invoke the script from the command line" orderList = [ ('apples', 2.0), ('pears', 3.0), ('limes', 4.0) ] print 'Cost of', orderList, 'is', buyLotsOfFruit(orderList)

class InfinityType: def __repr__(self) -> str: return "Infinity" def __hash__(self) -> int: return hash(repr(self)) def __lt__(self, other: object) -> bool: return False def __le__(self, other: object) -> bool: return False def __eq__(self, other: object) -> bool: return isinstance(other, self.__class__) def __ne__(self, other: object) -> bool: return not isinstance(other, self.__class__) def __gt__(self, other: object) -> bool: return True def __ge__(self, other: object) -> bool: return True def __neg__(self: object) -> "NegativeInfinityType": return NegativeInfinity Infinity = InfinityType() class NegativeInfinityType: def __repr__(self) -> str: return "-Infinity" def __hash__(self) -> int: return hash(repr(self)) def __lt__(self, other: object) -> bool: return True def __le__(self, other: object) -> bool: return True def __eq__(self, other: object) -> bool: return isinstance(other, self.__class__) def __ne__(self, other: object) -> bool: return not isinstance(other, self.__class__) def __gt__(self, other: object) -> bool: return False def __ge__(self, other: object) -> bool: return False def __neg__(self: object) -> InfinityType: return Infinity NegativeInfinity = NegativeInfinityType()

!/usr/bin/env python import smtplib import json from pprint import pprint from email.mime.multipart import MIMEMultipart from email.mime.text import MIMEText # Send a text message notifying them of a new song by artist (based on their choices) # This opens json file containing needed values # TODO: investigate IMAP # TODO: Create subscription to avoid spam filter # TODO: Put html in separate file (make it look nice) # TODO: Rename this file # TODO: concat multiple new artists in 1 text def main(): '''In the future, this could read the correct user from a file and depending and select the correct message to send as well''' message = "Got.... Heem" # message = "Testing email" subject = "plain" person = "Eric Krause" # full_message = make_email_message(person, subject, message) #send_message(person, full_message, 'email') send_message(person, message, 'text') def make_new_song_text(artist, song_id): '''Creates the message based off the artist and song_id, which are pulled from youtube-dl.''' return "New song '%s' by '%s' was uploaded today" % (song_id, artist) def make_email_message(person, subject, message): ''' Constructs email from given information (generic method). Pass string of person's name.''' json_data=open('privates.json') data = json.load(json_data) json_data.close() full_msg = MIMEMultipart('alternative') # plaintext version of message full_msg['Subject'] = '%s' %subject full_msg['From'] = '%s' % data['credentials']['username'] #data['credentials']['username'] full_msg['To'] = '%s' % data['phonebook'][person][1] text = "%s" % message # html version of message html = """ <html> <head></head> <body> <p> Totally different now<br> Here's more info. Yep. </p> </body> </html> """ # This reads in html file # f = open("subscribe_msg.html") # html = f.read() # f.close() # Record the MIME types of both parts - text/plain and text/html. part1 = MIMEText(text, 'plain') part2 = MIMEText(html, 'html') full_msg.attach(part1) full_msg.attach(part2) return full_msg.as_string() def send_message(person, message, service): '''Sends message to any person in our phonebook. Service selects which technology is used (text or email). ''' # open phonebook info json_data=open('privates.json') data = json.load(json_data) json_data.close() server = smtplib.SMTP('smtp.gmail.com',587) #select correct list index to get correct email or text address if (service == 'text' or service == 'Text'): s = 0 elif (service == 'email' or service == 'Email'): s = 1 else: print ("Incorrect service option selected. Please enter 'text' or 'email'") try: server.starttls() server.login(data['credentials']['username'],data['credentials']['password']) server.sendmail(data['credentials']['username'], data['phonebook'][person][s],message) except: print "Could not send message" finally: server.quit()

"""Defines the base component class from which Landlab components inherit. Base component class methods ++++++++++++++++++++++++++++ .. autosummary:: ~landlab.core.model_component.Component.name ~landlab.core.model_component.Component.from_path ~landlab.core.model_component.Component.unit_agnostic ~landlab.core.model_component.Component.units ~landlab.core.model_component.Component.definitions ~landlab.core.model_component.Component.input_var_names ~landlab.core.model_component.Component.output_var_names ~landlab.core.model_component.Component.optional_var_names ~landlab.core.model_component.Component.var_type ~landlab.core.model_component.Component.var_units ~landlab.core.model_component.Component.var_definition ~landlab.core.model_component.Component.var_mapping ~landlab.core.model_component.Component.var_loc ~landlab.core.model_component.Component.var_help ~landlab.core.model_component.Component.initialize_output_fields ~landlab.core.model_component.Component.initialize_optional_output_fields ~landlab.core.model_component.Component.shape ~landlab.core.model_component.Component.grid ~landlab.core.model_component.Component.coords """ import os import textwrap import numpy as np from .. import registry from ..field import FieldError from .model_parameter_loader import load_params _VAR_HELP_MESSAGE = """ name: {name} description: {desc} units: {units} unit agnostic: {unit_agnostic} at: {loc} intent: {intent} """ class classproperty(property): def __get__(self, cls, owner): return self.fget.__get__(None, owner)() class Component: """Base component class from which Landlab components inherit.""" _info = {} _name = None _cite_as = "" _unit_agnostic = None def __new__(cls, *args, **kwds): registry.add(cls) return object.__new__(cls) def __init__(self, grid): self._grid = grid self._current_time = None # ensure that required input fields exist for name in self._info.keys(): at = self._info[name]["mapping"] optional = self._info[name]["optional"] in_true = "in" in self._info[name]["intent"] if (in_true) and (not optional): # if required input, verify that it exists. if name not in self._grid[at]: raise FieldError( "{component} is missing required input field: {name} at {at}".format( component=self._name, name=name, at=at ) ) # if required input exists, check dtype. field = self._grid[at][name] dtype = self._info[name]["dtype"] if field.dtype != dtype: raise FieldError( "{component} required input variable: {name} at {at} has incorrect dtype. dtype must be {dtype} and is {actual}".format( component=self._name, name=name, at=at, dtype=dtype, actual=field.dtype, ) ) # if optional input exists, check dtype if in_true and optional: if name in self._grid[at]: field = self._grid[at][name] dtype = self._info[name]["dtype"] if field.dtype != dtype: raise FieldError( "{component} optional input variable: {name} at {at} has incorrect dtype. dtype must be {dtype} and is {actual}".format( component=self._name, name=name, at=at, dtype=dtype, actual=field.dtype, ) ) @classmethod def from_path(cls, grid, path): """Create a component from an input file. Parameters ---------- grid : ModelGrid A landlab grid. path : str or file_like Path to a parameter file, contents of a parameter file, or a file-like object. Returns ------- Component A newly-created component. """ if os.path.isfile(path): with open(path, "r") as fp: params = load_params(fp) else: params = load_params(path) return cls(grid, **params) @classproperty @classmethod def cite_as(cls): """Citation information for component. Return required software citation, if any. An empty string indicates that no citations other than the standard Landlab package citations are needed for the component. Citations are provided in BibTeX format. Returns ------- cite_as """ return cls._cite_as @property def current_time(self): """Current time. Some components may keep track of the current time. In this case, the ``current_time`` attribute is incremented. Otherwise it is set to None. Returns ------- current_time """ return self._current_time @current_time.setter def current_time(self, new_time): if self._current_time is not None: assert new_time > self._current_time self._current_time = new_time @classproperty @classmethod def input_var_names(cls): """Names of fields that are used by the component. Returns ------- tuple of str Tuple of field names. """ input_var_names = [ name for name in cls._info.keys() if (not cls._info[name]["optional"]) and ("in" in cls._info[name]["intent"]) ] return tuple(sorted(input_var_names)) @classproperty @classmethod def output_var_names(cls): """Names of fields that are provided by the component. Returns ------- tuple of str Tuple of field names. """ output_var_names = [ name for name in cls._info.keys() if (not cls._info[name]["optional"]) and ("out" in cls._info[name]["intent"]) ] return tuple(sorted(output_var_names)) @classproperty @classmethod def optional_var_names(cls): """Names of fields that are optionally provided by the component, if any. Returns ------- tuple of str Tuple of field names. """ optional_var_names = [ name for name in cls._info.keys() if cls._info[name]["optional"] ] return tuple(sorted(optional_var_names)) @classmethod def var_type(cls, name): """Returns the dtype of a field (float, int, bool, str...). Parameters ---------- name : str A field name. Returns ------- dtype The dtype of the field. """ return cls._info[name]["dtype"] @classproperty @classmethod def name(cls): """Name of the component. Returns ------- str Component name. """ return cls._name @classproperty @classmethod def unit_agnostic(cls): """Whether the component is unit agnostic. If True, then the component is unit agnostic. Under this condition a user must still provide consistent units across all input arguments, keyword arguments, and fields. However, when ``unit_agnostic`` is True the units specified can be interpreted as dimensions. When False, then the component requires inputs in the specified units. Returns ------- bool """ return cls._unit_agnostic @classproperty @classmethod def units(cls): """Get the units for all field values. Returns ------- tuple or str Units for each field. """ return tuple( sorted([(name, cls._info[name]["units"]) for name in cls._info.keys()]) ) @classmethod def var_units(cls, name): """Get the units of a particular field. Parameters ---------- name : str A field name. Returns ------- str Units for the given field. """ return cls._info[name]["units"] @classproperty @classmethod def definitions(cls): """Get a description of each field. Returns ------- tuple of (*name*, *description*) A description of each field. """ return tuple( sorted([(name, cls._info[name]["doc"]) for name in cls._info.keys()]) ) @classmethod def var_definition(cls, name): """Get a description of a particular field. Parameters ---------- name : str A field name. Returns ------- tuple of (*name*, *description*) A description of each field. """ return cls._info[name]["doc"] @classmethod def var_help(cls, name): """Print a help message for a particular field. Parameters ---------- name : str A field name. """ desc = os.linesep.join( textwrap.wrap( cls._info[name]["doc"], initial_indent=" ", subsequent_indent=" " ) ) units = cls._info[name]["units"] loc = cls._info[name]["mapping"] intent = cls._info[name]["intent"] help = _VAR_HELP_MESSAGE.format( name=name, desc=desc, units=units, loc=loc, intent=intent, unit_agnostic=cls._unit_agnostic, ) print(help.strip()) @classproperty @classmethod def var_mapping(cls): """Location where variables are defined. Returns ------- tuple of (name, location) Tuple of variable name and location ('node', 'link', etc.) pairs. """ return tuple( sorted([(name, cls._info[name]["mapping"]) for name in cls._info.keys()]) ) @classmethod def var_loc(cls, name): """Location where a particular variable is defined. Parameters ---------- name : str A field name. Returns ------- str The location ('node', 'link', etc.) where a variable is defined. """ return cls._info[name]["mapping"] def initialize_output_fields(self, values_per_element=None): """Create fields for a component based on its input and output var names. This method will create new fields (without overwrite) for any fields output by, but not supplied to, the component. New fields are initialized to zero. Ignores optional fields. New fields are created as arrays of floats, unless the component specifies the variable type. Parameters ---------- values_per_element: int (optional) On occasion, it is necessary to create a field that is of size (n_grid_elements, values_per_element) instead of the default size (n_grid_elements,). Use this keyword argument to acomplish this task. """ for name in self._info.keys(): at = self._info[name]["mapping"] optional = self._info[name]["optional"] out_true = "out" in self._info[name]["intent"] if (out_true) and (not optional) and (name not in self._grid[at]): type_in = self.var_type(name) num_elements = self._grid.size(at) if values_per_element is None: size = num_elements else: size = (num_elements, values_per_element) init_vals = np.zeros(size, dtype=type_in) units_in = self.var_units(name) self.grid.add_field(name, init_vals, at=at, units=units_in, copy=False) def initialize_optional_output_fields(self): """Create fields for a component based on its optional field outputs, if declared in _optional_var_names. This method will create new fields (without overwrite) for any fields output by the component as optional. New fields are initialized to zero. New fields are created as arrays of floats, unless the component also contains the specifying property _var_type. """ for name in self._info.keys(): at = self._info[name]["mapping"] optional = self._info[name]["optional"] out_true = "out" in self._info[name]["intent"] if (out_true) and (optional) and (name not in self._grid[at]): type_in = self.var_type(name) init_vals = self.grid.zeros(at, dtype=type_in) units_in = self.var_units(name) self.grid.add_field(name, init_vals, at=at, units=units_in, copy=False) @property def shape(self): """Return the grid shape attached to the component, if defined.""" return self.grid._shape @property def grid(self): """Return the grid attached to the component.""" return self._grid @property def coords(self): """Return the coordinates of nodes on grid attached to the component.""" return (self.grid.node_x, self.grid.node_y)

from toontown.parties import PartyGlobals from toontown.parties.DistributedPartyDanceActivityBase import DistributedPartyDanceActivityBase from toontown.toonbase import TTLocalizer class DistributedPartyValentineDanceActivity(DistributedPartyDanceActivityBase): notify = directNotify.newCategory('DistributedPartyValentineDanceActivity') def __init__(self, cr): DistributedPartyDanceActivityBase.__init__(self, cr, PartyGlobals.ActivityIds.PartyDance, PartyGlobals.DancePatternToAnims, model='phase_13/models/parties/tt_m_ara_pty_danceFloorValentine') def getInstructions(self): return TTLocalizer.PartyDanceActivityInstructions def getTitle(self): return TTLocalizer.PartyDanceActivityTitle def load(self): DistributedPartyDanceActivityBase.load(self) parentGroup = self.danceFloor.find('**/discoBall_mesh') correctBall = self.danceFloor.find('**/discoBall_10') origBall = self.danceFloor.find('**/discoBall_mesh_orig') if not correctBall.isEmpty(): numChildren = parentGroup.getNumChildren() for i in xrange(numChildren): child = parentGroup.getChild(i) if child != correctBall: child.hide()

""" This module provides a hook which generates a cucumber json result file at the end of the run. """ from getpass import getuser from socket import gethostname from datetime import timedelta import re import json import logging from radish.terrain import world from radish.hookregistry import after from radish.exceptions import RadishError from radish.scenariooutline import ScenarioOutline from radish.scenarioloop import ScenarioLoop from radish.stepmodel import Step from radish.extensionregistry import extension import radish.utils as utils @extension class CucumberJSONWriter(object): """ cucumber json Writer radish extension """ OPTIONS = [("--cucumber-json=<ccjson>", "write cucumber json result file after run")] LOAD_IF = staticmethod(lambda config: config.cucumber_json) LOAD_PRIORITY = 60 def __init__(self): after.all(self.generate_ccjson) def generate_ccjson(self, features, marker): """ Generates the cucumber json """ if not features: raise RadishError("No features given to generate cucumber json file") duration = timedelta() for feature in features: if feature.state in [Step.State.PASSED, Step.State.FAILED]: duration += feature.duration ccjson = [] for feature in features: if not feature.has_to_run(world.config.scenarios): continue feature_description = "\n".join(feature.description) feature_json = { "uri": feature.path, "type": "feature", "keyword": feature.keyword, "id": str(feature.id), "name": feature.sentence, "line": feature.line, "description": feature_description, "tags": [], "elements": [] } for i,j in enumerate(feature.tags): feature_json["tags"].append({"name": "@" + j.name, "line": feature.line - len(feature.tags) + i}) for scenario in (s for s in feature.all_scenarios if not isinstance(s, (ScenarioOutline, ScenarioLoop))): if not scenario.has_to_run(world.config.scenarios): continue scenario_json = { "keyword": scenario.keyword, "type": "scenario", "id": str(scenario.id), "name": scenario.sentence, "line": scenario.line, "description": "", "steps": [], "tags": [] } start_line_no = scenario.line - len(scenario.tags) for i, tag in enumerate(scenario.tags): scenario_json["tags"].append({"name": "@" + tag.name, "line": start_line_no + i}) for step in scenario.all_steps: duration = step.duration.total_seconds() * 1e9 if step.starttime and step.endtime else 0.0 step_json = { "keyword": step.sentence.split()[0], "name": step.sentence, "line": step.line, "result": { "status": step.state, "duration": duration } } if step.state is Step.State.FAILED: step_json["result"]["error_message"] = step.failure.reason if step.state is Step.State.UNTESTED: step_json["result"]["status"] = "skipped" scenario_json["steps"].append(step_json) feature_json["elements"].append(scenario_json) ccjson.append(feature_json) with open(world.config.cucumber_json, "w+") as f: content = json.dumps(ccjson, indent=4, sort_keys=True) f.write(content)

import os import sys _SCRIPT_DIR = os.path.realpath(os.path.dirname(__file__)) _CHROME_SOURCE = os.path.realpath( os.path.join(_SCRIPT_DIR, *[os.path.pardir] * 6)) sys.path.append(os.path.join(_CHROME_SOURCE, 'build/android/gyp')) import argparse import json from util import build_utils def process_emoticon_data(metadata): """Produce the emoticon data to be consumed by the emoji picker. Args: metadata (list(dict)): list of emoticon group data. Returns: list(dict): list of readily used emoticon groups. """ return [{ "group": group["group"], "emoji": [{ "base": { "string": emoticon["value"], "name": emoticon["description"], "keywords": [] }, "alternates": [] } for emoticon in group["emoticon"]] } for group in metadata] def main(args): parser = argparse.ArgumentParser() parser.add_argument('--metadata', required=True, help='emoji metadata ordering file as JSON') parser.add_argument('--output', required=True, help='output JSON file path') options = parser.parse_args(args) metadata_file = options.metadata output_file = options.output # Parse emoticon ordering data. metadata = [] with open(metadata_file, 'r') as file: metadata = json.load(file) emoticon_data = process_emoticon_data(metadata) # Write output file atomically in utf-8 format. with build_utils.AtomicOutput(output_file) as tmp_file: tmp_file.write( json.dumps(emoticon_data, separators=(',', ':'), ensure_ascii=False).encode('utf-8')) if __name__ == '__main__': main(sys.argv[1:])

from ccxt.base.exchange import Exchange from ccxt.base.errors import ExchangeError from ccxt.base.errors import AuthenticationError from ccxt.base.errors import PermissionDenied from ccxt.base.errors import AccountNotEnabled from ccxt.base.errors import AccountSuspended from ccxt.base.errors import ArgumentsRequired from ccxt.base.errors import BadRequest from ccxt.base.errors import BadSymbol from ccxt.base.errors import InsufficientFunds from ccxt.base.errors import InvalidOrder from ccxt.base.errors import OrderNotFound from ccxt.base.errors import CancelPending from ccxt.base.errors import RateLimitExceeded from ccxt.base.errors import OnMaintenance from ccxt.base.decimal_to_precision import TICK_SIZE class novadax(Exchange): def describe(self): return self.deep_extend(super(novadax, self).describe(), { 'id': 'novadax', 'name': 'NovaDAX', 'countries': ['BR'], # Brazil # 60 requests per second = 1000ms / 60 = 16.6667ms between requests(public endpoints, limited by IP address) # 20 requests per second => cost = 60 / 20 = 3(private endpoints, limited by API Key) 'rateLimit': 16.6667, 'version': 'v1', # new metainfo interface 'has': { 'CORS': None, 'spot': True, 'margin': False, 'swap': False, 'future': False, 'option': False, 'addMargin': False, 'cancelOrder': True, 'createOrder': True, 'createReduceOnlyOrder': False, 'createStopLimitOrder': True, 'createStopMarketOrder': True, 'createStopOrder': True, 'fetchAccounts': True, 'fetchBalance': True, 'fetchBorrowRate': False, 'fetchBorrowRateHistories': False, 'fetchBorrowRateHistory': False, 'fetchBorrowRates': False, 'fetchBorrowRatesPerSymbol': False, 'fetchClosedOrders': True, 'fetchDeposits': True, 'fetchFundingHistory': False, 'fetchFundingRate': False, 'fetchFundingRateHistory': False, 'fetchFundingRates': False, 'fetchIndexOHLCV': False, 'fetchLeverage': False, 'fetchLeverageTiers': False, 'fetchMarkets': True, 'fetchMarkOHLCV': False, 'fetchMyTrades': True, 'fetchOHLCV': True, 'fetchOpenInterestHistory': False, 'fetchOpenOrders': True, 'fetchOrder': True, 'fetchOrderBook': True, 'fetchOrders': True, 'fetchOrderTrades': True, 'fetchPosition': False, 'fetchPositions': False, 'fetchPositionsRisk': False, 'fetchPremiumIndexOHLCV': False, 'fetchTicker': True, 'fetchTickers': True, 'fetchTime': True, 'fetchTrades': True, 'fetchTradingFee': False, 'fetchTradingFees': False, 'fetchTransactions': True, 'fetchWithdrawals': True, 'reduceMargin': False, 'setLeverage': False, 'setMarginMode': False, 'setPositionMode': False, 'transfer': True, 'withdraw': True, }, 'timeframes': { '1m': 'ONE_MIN', '5m': 'FIVE_MIN', '15m': 'FIFTEEN_MIN', '30m': 'HALF_HOU', '1h': 'ONE_HOU', '1d': 'ONE_DAY', '1w': 'ONE_WEE', '1M': 'ONE_MON', }, 'urls': { 'logo': 'https://user-images.githubusercontent.com/1294454/92337550-2b085500-f0b3-11ea-98e7-5794fb07dd3b.jpg', 'api': { 'public': 'https://api.novadax.com', 'private': 'https://api.novadax.com', }, 'www': 'https://www.novadax.com.br', 'doc': [ 'https://doc.novadax.com/pt-BR/', ], 'fees': 'https://www.novadax.com.br/fees-and-limits', 'referral': 'https://www.novadax.com.br/?s=ccxt', }, 'api': { 'public': { 'get': { 'common/symbol': 1.2, 'common/symbols': 1.2, 'common/timestamp': 1.2, 'market/tickers': 1.2, 'market/ticker': 1.2, 'market/depth': 1.2, 'market/trades': 1.2, 'market/kline/history': 1.2, }, }, 'private': { 'get': { 'orders/get': 3, 'orders/list': 3, 'orders/fill': 3, 'orders/fills': 3, 'account/getBalance': 3, 'account/subs': 3, 'account/subs/balance': 3, 'account/subs/transfer/record': 3, 'wallet/query/deposit-withdraw': 3, }, 'post': { 'orders/create': 3, 'orders/cancel': 3, 'account/withdraw/coin': 3, 'account/subs/transfer': 3, }, }, }, 'fees': { 'trading': { 'tierBased': False, 'percentage': True, 'taker': self.parse_number('0.005'), 'maker': self.parse_number('0.0025'), }, }, 'requiredCredentials': { 'apiKey': True, 'secret': True, }, 'precisionMode': TICK_SIZE, 'exceptions': { 'exact': { 'A99999': ExchangeError, # 500 Failed Internal error # 'A10000': ExchangeError, # 200 Success Successful request 'A10001': BadRequest, # 400 Params error Parameter is invalid 'A10002': ExchangeError, # 404 Api not found API used is irrelevant 'A10003': AuthenticationError, # 403 Authentication failed Authentication is failed 'A10004': RateLimitExceeded, # 429 Too many requests Too many requests are made 'A10005': PermissionDenied, # 403 Kyc required Need to complete KYC firstly 'A10006': AccountSuspended, # 403 Customer canceled Account is canceled 'A10007': AccountNotEnabled, # 400 Account not exist Sub account does not exist 'A10011': BadSymbol, # 400 Symbol not exist Trading symbol does not exist 'A10012': BadSymbol, # 400 Symbol not trading Trading symbol is temporarily not available 'A10013': OnMaintenance, # 503 Symbol maintain Trading symbol is in maintain 'A30001': OrderNotFound, # 400 Order not found Queried order is not found 'A30002': InvalidOrder, # 400 Order amount is too small Order amount is too small 'A30003': InvalidOrder, # 400 Order amount is invalid Order amount is invalid 'A30004': InvalidOrder, # 400 Order value is too small Order value is too small 'A30005': InvalidOrder, # 400 Order value is invalid Order value is invalid 'A30006': InvalidOrder, # 400 Order price is invalid Order price is invalid 'A30007': InsufficientFunds, # 400 Insufficient balance The balance is insufficient 'A30008': InvalidOrder, # 400 Order was closed The order has been executed 'A30009': InvalidOrder, # 400 Order canceled The order has been cancelled 'A30010': CancelPending, # 400 Order cancelling The order is being cancelled 'A30011': InvalidOrder, # 400 Order price too high The order price is too high 'A30012': InvalidOrder, # 400 Order price too low The order price is too low 'A40004': InsufficientFunds, # {"code":"A40004","data":[],"message":"sub account balance Insufficient"} }, 'broad': { }, }, 'options': { 'fetchOHLCV': { 'volume': 'amount', # 'amount' for base volume or 'vol' for quote volume }, 'transfer': { 'fillResponseFromRequest': True, }, }, }) def fetch_time(self, params={}): """ fetches the current integer timestamp in milliseconds from the exchange server :param dict params: extra parameters specific to the novadax api endpoint :returns int: the current integer timestamp in milliseconds from the exchange server """ response = self.publicGetCommonTimestamp(params) # # { # "code":"A10000", # "data":1599090512080, # "message":"Success" # } # return self.safe_integer(response, 'data') def fetch_markets(self, params={}): """ retrieves data on all markets for novadax :param dict params: extra parameters specific to the exchange api endpoint :returns [dict]: an array of objects representing market data """ response = self.publicGetCommonSymbols(params) # # { # "code":"A10000", # "data":[ # { # "amountPrecision":8, # "baseCurrency":"BTC", # "minOrderAmount":"0.001", # "minOrderValue":"25", # "pricePrecision":2, # "quoteCurrency":"BRL", # "status":"ONLINE", # "symbol":"BTC_BRL", # "valuePrecision":2 # }, # ], # "message":"Success" # } # result = [] data = self.safe_value(response, 'data', []) for i in range(0, len(data)): market = data[i] baseId = self.safe_string(market, 'baseCurrency') quoteId = self.safe_string(market, 'quoteCurrency') id = self.safe_string(market, 'symbol') base = self.safe_currency_code(baseId) quote = self.safe_currency_code(quoteId) status = self.safe_string(market, 'status') result.append({ 'id': id, 'symbol': base + '/' + quote, 'base': base, 'quote': quote, 'settle': None, 'baseId': baseId, 'quoteId': quoteId, 'settleId': None, 'type': 'spot', 'spot': True, 'margin': False, 'swap': False, 'future': False, 'option': False, 'active': (status == 'ONLINE'), 'contract': False, 'linear': None, 'inverse': None, 'contractSize': None, 'expiry': None, 'expiryDatetime': None, 'strike': None, 'optionType': None, 'precision': { 'amount': self.parse_number(self.parse_precision(self.safe_string(market, 'amountPrecision'))), 'price': self.parse_number(self.parse_precision(self.safe_string(market, 'pricePrecision'))), 'cost': self.parse_number(self.parse_precision(self.safe_string(market, 'valuePrecision'))), }, 'limits': { 'leverage': { 'min': None, 'max': None, }, 'amount': { 'min': self.safe_number(market, 'minOrderAmount'), 'max': None, }, 'price': { 'min': None, 'max': None, }, 'cost': { 'min': self.safe_number(market, 'minOrderValue'), 'max': None, }, }, 'info': market, }) return result def parse_ticker(self, ticker, market=None): # # fetchTicker, fetchTickers # # { # "ask":"61946.1", # "baseVolume24h":"164.41930186", # "bid":"61815", # "high24h":"64930.72", # "lastPrice":"61928.41", # "low24h":"61156.32", # "open24h":"64512.46", # "quoteVolume24h":"10308157.95", # "symbol":"BTC_BRL", # "timestamp":1599091115090 # } # timestamp = self.safe_integer(ticker, 'timestamp') marketId = self.safe_string(ticker, 'symbol') symbol = self.safe_symbol(marketId, market, '_') open = self.safe_string(ticker, 'open24h') last = self.safe_string(ticker, 'lastPrice') baseVolume = self.safe_string(ticker, 'baseVolume24h') quoteVolume = self.safe_string(ticker, 'quoteVolume24h') return self.safe_ticker({ 'symbol': symbol, 'timestamp': timestamp, 'datetime': self.iso8601(timestamp), 'high': self.safe_string(ticker, 'high24h'), 'low': self.safe_string(ticker, 'low24h'), 'bid': self.safe_string(ticker, 'bid'), 'bidVolume': None, 'ask': self.safe_string(ticker, 'ask'), 'askVolume': None, 'vwap': None, 'open': open, 'close': last, 'last': last, 'previousClose': None, 'change': None, 'percentage': None, 'average': None, 'baseVolume': baseVolume, 'quoteVolume': quoteVolume, 'info': ticker, }, market) def fetch_ticker(self, symbol, params={}): """ fetches a price ticker, a statistical calculation with the information calculated over the past 24 hours for a specific market :param str symbol: unified symbol of the market to fetch the ticker for :param dict params: extra parameters specific to the novadax api endpoint :returns dict: a `ticker structure <https://docs.ccxt.com/en/latest/manual.html#ticker-structure>` """ self.load_markets() market = self.market(symbol) request = { 'symbol': market['id'], } response = self.publicGetMarketTicker(self.extend(request, params)) # # { # "code":"A10000", # "data":{ # "ask":"61946.1", # "baseVolume24h":"164.41930186", # "bid":"61815", # "high24h":"64930.72", # "lastPrice":"61928.41", # "low24h":"61156.32", # "open24h":"64512.46", # "quoteVolume24h":"10308157.95", # "symbol":"BTC_BRL", # "timestamp":1599091115090 # }, # "message":"Success" # } # data = self.safe_value(response, 'data', {}) return self.parse_ticker(data, market) def fetch_tickers(self, symbols=None, params={}): """ fetches price tickers for multiple markets, statistical calculations with the information calculated over the past 24 hours each market :param [str]|None symbols: unified symbols of the markets to fetch the ticker for, all market tickers are returned if not assigned :param dict params: extra parameters specific to the novadax api endpoint :returns dict: an array of `ticker structures <https://docs.ccxt.com/en/latest/manual.html#ticker-structure>` """ self.load_markets() symbols = self.market_symbols(symbols) response = self.publicGetMarketTickers(params) # # { # "code":"A10000", # "data":[ # { # "ask":"61879.36", # "baseVolume24h":"164.40955092", # "bid":"61815", # "high24h":"64930.72", # "lastPrice":"61820.04", # "low24h":"61156.32", # "open24h":"64624.19", # "quoteVolume24h":"10307493.92", # "symbol":"BTC_BRL", # "timestamp":1599091291083 # }, # ], # "message":"Success" # } # data = self.safe_value(response, 'data', []) result = {} for i in range(0, len(data)): ticker = self.parse_ticker(data[i]) symbol = ticker['symbol'] result[symbol] = ticker return self.filter_by_array(result, 'symbol', symbols) def fetch_order_book(self, symbol, limit=None, params={}): """ fetches information on open orders with bid(buy) and ask(sell) prices, volumes and other data :param str symbol: unified symbol of the market to fetch the order book for :param int|None limit: the maximum amount of order book entries to return :param dict params: extra parameters specific to the novadax api endpoint :returns dict: A dictionary of `order book structures <https://docs.ccxt.com/en/latest/manual.html#order-book-structure>` indexed by market symbols """ self.load_markets() market = self.market(symbol) request = { 'symbol': market['id'], } if limit is not None: request['limit'] = limit # default 10, max 20 response = self.publicGetMarketDepth(self.extend(request, params)) # # { # "code":"A10000", # "data":{ # "asks":[ # ["0.037159","0.3741"], # ["0.037215","0.2706"], # ["0.037222","1.8459"], # ], # "bids":[ # ["0.037053","0.3857"], # ["0.036969","0.8101"], # ["0.036953","1.5226"], # ], # "timestamp":1599280414448 # }, # "message":"Success" # } # data = self.safe_value(response, 'data', {}) timestamp = self.safe_integer(data, 'timestamp') return self.parse_order_book(data, market['symbol'], timestamp, 'bids', 'asks') def parse_trade(self, trade, market=None): # # public fetchTrades # # { # "amount":"0.0632", # "price":"0.037288", # "side":"BUY", # "timestamp":1599279694576 # } # # private fetchOrderTrades # # { # "id": "608717046691139584", # "orderId": "608716957545402368", # "symbol": "BTC_BRL", # "side": "BUY", # "amount": "0.0988", # "price": "45514.76", # "fee": "0.0000988 BTC", # "feeAmount": "0.0000988", # "feeCurrency": "BTC", # "role": "MAKER", # "timestamp": 1565171053345 # } # # private fetchMyTrades(same endpoint as fetchOrderTrades) # # { # "id": "608717046691139584", # "orderId": "608716957545402368", # "symbol": "BTC_BRL", # "side": "BUY", # "amount": "0.0988", # "price": "45514.76", # "fee": "0.0000988 BTC", # "feeAmount": "0.0000988", # "feeCurrency": "BTC", # "role": "MAKER", # "timestamp": 1565171053345 # } # id = self.safe_string(trade, 'id') orderId = self.safe_string(trade, 'orderId') timestamp = self.safe_integer(trade, 'timestamp') side = self.safe_string_lower(trade, 'side') priceString = self.safe_string(trade, 'price') amountString = self.safe_string(trade, 'amount') marketId = self.safe_string(trade, 'symbol') symbol = self.safe_symbol(marketId, market, '_') takerOrMaker = self.safe_string_lower(trade, 'role') feeString = self.safe_string(trade, 'fee') fee = None if feeString is not None: feeCurrencyId = self.safe_string(trade, 'feeCurrency') feeCurrencyCode = self.safe_currency_code(feeCurrencyId) fee = { 'cost': self.safe_string(trade, 'feeAmount'), 'currency': feeCurrencyCode, } return self.safe_trade({ 'id': id, 'order': orderId, 'timestamp': timestamp, 'datetime': self.iso8601(timestamp), 'symbol': symbol, 'type': None, 'side': side, 'price': priceString, 'amount': amountString, 'cost': None, 'takerOrMaker': takerOrMaker, 'fee': fee, 'info': trade, }, market) def fetch_trades(self, symbol, since=None, limit=None, params={}): """ get the list of most recent trades for a particular symbol :param str symbol: unified symbol of the market to fetch trades for :param int|None since: timestamp in ms of the earliest trade to fetch :param int|None limit: the maximum amount of trades to fetch :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `trade structures <https://docs.ccxt.com/en/latest/manual.html?#public-trades>` """ self.load_markets() market = self.market(symbol) request = { 'symbol': market['id'], } if limit is not None: request['limit'] = limit # default 100 response = self.publicGetMarketTrades(self.extend(request, params)) # # { # "code":"A10000", # "data":[ # {"amount":"0.0632","price":"0.037288","side":"BUY","timestamp":1599279694576}, # {"amount":"0.0052","price":"0.03715","side":"SELL","timestamp":1599276606852}, # {"amount":"0.0058","price":"0.037188","side":"SELL","timestamp":1599275187812}, # ], # "message":"Success" # } # data = self.safe_value(response, 'data', []) return self.parse_trades(data, market, since, limit) def fetch_ohlcv(self, symbol, timeframe='1m', since=None, limit=None, params={}): """ fetches historical candlestick data containing the open, high, low, and close price, and the volume of a market :param str symbol: unified symbol of the market to fetch OHLCV data for :param str timeframe: the length of time each candle represents :param int|None since: timestamp in ms of the earliest candle to fetch :param int|None limit: the maximum amount of candles to fetch :param dict params: extra parameters specific to the novadax api endpoint :returns [[int]]: A list of candles ordered as timestamp, open, high, low, close, volume """ self.load_markets() market = self.market(symbol) request = { 'symbol': market['id'], 'unit': self.timeframes[timeframe], } duration = self.parse_timeframe(timeframe) now = self.seconds() if limit is None: limit = 3000 # max if since is None: request['from'] = now - limit * duration request['to'] = now else: startFrom = int(since / 1000) request['from'] = startFrom request['to'] = self.sum(startFrom, limit * duration) response = self.publicGetMarketKlineHistory(self.extend(request, params)) # # { # "code": "A10000", # "data": [ # { # "amount": 8.25709100, # "closePrice": 62553.20, # "count": 29, # "highPrice": 62592.87, # "lowPrice": 62553.20, # "openPrice": 62554.23, # "score": 1602501480, # "symbol": "BTC_BRL", # "vol": 516784.2504067500 # } # ], # "message": "Success" # } # data = self.safe_value(response, 'data', []) return self.parse_ohlcvs(data, market, timeframe, since, limit) def parse_ohlcv(self, ohlcv, market=None): # # { # "amount": 8.25709100, # "closePrice": 62553.20, # "count": 29, # "highPrice": 62592.87, # "lowPrice": 62553.20, # "openPrice": 62554.23, # "score": 1602501480, # "symbol": "BTC_BRL", # "vol": 516784.2504067500 # } # options = self.safe_value(self.options, 'fetchOHLCV', {}) volumeField = self.safe_string(options, 'volume', 'amount') # or vol return [ self.safe_timestamp(ohlcv, 'score'), self.safe_number(ohlcv, 'openPrice'), self.safe_number(ohlcv, 'highPrice'), self.safe_number(ohlcv, 'lowPrice'), self.safe_number(ohlcv, 'closePrice'), self.safe_number(ohlcv, volumeField), ] def parse_balance(self, response): data = self.safe_value(response, 'data', []) result = { 'info': response, 'timestamp': None, 'datetime': None, } for i in range(0, len(data)): balance = data[i] currencyId = self.safe_string(balance, 'currency') code = self.safe_currency_code(currencyId) account = self.account() account['total'] = self.safe_string(balance, 'balance') account['free'] = self.safe_string(balance, 'available') account['used'] = self.safe_string(balance, 'hold') result[code] = account return self.safe_balance(result) def fetch_balance(self, params={}): """ query for balance and get the amount of funds available for trading or funds locked in orders :param dict params: extra parameters specific to the novadax api endpoint :returns dict: a `balance structure <https://docs.ccxt.com/en/latest/manual.html?#balance-structure>` """ self.load_markets() response = self.privateGetAccountGetBalance(params) # # { # "code": "A10000", # "data": [ # { # "available": "1.23", # "balance": "0.23", # "currency": "BTC", # "hold": "1" # } # ], # "message": "Success" # } # return self.parse_balance(response) def create_order(self, symbol, type, side, amount, price=None, params={}): """ create a trade order :param str symbol: unified symbol of the market to create an order in :param str type: 'market' or 'limit' :param str side: 'buy' or 'sell' :param float amount: how much of currency you want to trade in units of base currency :param float|None price: the price at which the order is to be fullfilled, in units of the quote currency, ignored in market orders :param dict params: extra parameters specific to the novadax api endpoint :returns dict: an `order structure <https://docs.ccxt.com/en/latest/manual.html#order-structure>` """ self.load_markets() market = self.market(symbol) uppercaseType = type.upper() uppercaseSide = side.upper() request = { 'symbol': market['id'], 'side': uppercaseSide, # or SELL # 'amount': self.amount_to_precision(symbol, amount), # "price": "1234.5678", # required for LIMIT and STOP orders # 'operator': '' # for stop orders, can be found in order introduction # 'stopPrice': self.price_to_precision(symbol, stopPrice), # 'accountId': '...', # subaccount id, optional } stopPrice = self.safe_value_2(params, 'triggerPrice', 'stopPrice') if stopPrice is None: if (uppercaseType == 'STOP_LIMIT') or (uppercaseType == 'STOP_MARKET'): raise ArgumentsRequired(self.id + ' createOrder() requires a stopPrice parameter for ' + uppercaseType + ' orders') else: if uppercaseType == 'LIMIT': uppercaseType = 'STOP_LIMIT' elif uppercaseType == 'MARKET': uppercaseType = 'STOP_MARKET' defaultOperator = 'LTE' if (uppercaseSide == 'BUY') else 'GTE' request['operator'] = self.safe_string(params, 'operator', defaultOperator) request['stopPrice'] = self.price_to_precision(symbol, stopPrice) params = self.omit(params, ['triggerPrice', 'stopPrice']) if (uppercaseType == 'LIMIT') or (uppercaseType == 'STOP_LIMIT'): request['price'] = self.price_to_precision(symbol, price) request['amount'] = self.amount_to_precision(symbol, amount) elif (uppercaseType == 'MARKET') or (uppercaseType == 'STOP_MARKET'): if uppercaseSide == 'SELL': request['amount'] = self.amount_to_precision(symbol, amount) elif uppercaseSide == 'BUY': value = self.safe_number(params, 'value') createMarketBuyOrderRequiresPrice = self.safe_value(self.options, 'createMarketBuyOrderRequiresPrice', True) if createMarketBuyOrderRequiresPrice: if price is not None: if value is None: value = amount * price elif value is None: raise InvalidOrder(self.id + " createOrder() requires the price argument with market buy orders to calculate total order cost(amount to spend), where cost = amount * price. Supply a price argument to createOrder() call if you want the cost to be calculated for you from price and amount, or, alternatively, add .options['createMarketBuyOrderRequiresPrice'] = False and supply the total cost value in the 'amount' argument or in the 'value' extra parameter(the exchange-specific behaviour)") else: value = amount if (value is None) else value request['value'] = self.cost_to_precision(symbol, value) request['type'] = uppercaseType response = self.privatePostOrdersCreate(self.extend(request, params)) # # { # "code": "A10000", # "data": { # "amount": "0.001", # "averagePrice": null, # "filledAmount": "0", # "filledFee": "0", # "filledValue": "0", # "id": "870613508008464384", # "operator": "GTE", # "price": "210000", # "side": "BUY", # "status": "SUBMITTED", # "stopPrice": "211000", # "symbol": "BTC_BRL", # "timestamp": 1627612035528, # "type": "STOP_LIMIT", # "value": "210" # }, # "message": "Success" # } # data = self.safe_value(response, 'data', {}) return self.parse_order(data, market) def cancel_order(self, id, symbol=None, params={}): """ cancels an open order :param str id: order id :param str|None symbol: not used by novadax cancelOrder() :param dict params: extra parameters specific to the novadax api endpoint :returns dict: An `order structure <https://docs.ccxt.com/en/latest/manual.html#order-structure>` """ self.load_markets() request = { 'id': id, } response = self.privatePostOrdersCancel(self.extend(request, params)) # # { # "code": "A10000", # "data": { # "result": True # }, # "message": "Success" # } # data = self.safe_value(response, 'data', {}) return self.parse_order(data) def fetch_order(self, id, symbol=None, params={}): """ fetches information on an order made by the user :param str|None symbol: not used by novadax fetchOrder :param dict params: extra parameters specific to the novadax api endpoint :returns dict: An `order structure <https://docs.ccxt.com/en/latest/manual.html#order-structure>` """ self.load_markets() request = { 'id': id, } response = self.privateGetOrdersGet(self.extend(request, params)) # # { # "code": "A10000", # "data": { # "id": "608695623247466496", # "symbol": "BTC_BRL", # "type": "MARKET", # "side": "SELL", # "price": null, # "averagePrice": "0", # "amount": "0.123", # "filledAmount": "0", # "value": null, # "filledValue": "0", # "filledFee": "0", # "status": "REJECTED", # "timestamp": 1565165945588 # }, # "message": "Success" # } # data = self.safe_value(response, 'data', {}) return self.parse_order(data) def fetch_orders(self, symbol=None, since=None, limit=None, params={}): """ fetches information on multiple orders made by the user :param str|None symbol: unified market symbol of the market orders were made in :param int|None since: the earliest time in ms to fetch orders for :param int|None limit: the maximum number of orde structures to retrieve :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `order structures <https://docs.ccxt.com/en/latest/manual.html#order-structure>` """ self.load_markets() request = { # 'symbol': market['id'], # 'status': 'SUBMITTED,PROCESSING', # SUBMITTED, PROCESSING, PARTIAL_FILLED, CANCELING, FILLED, CANCELED, REJECTED # 'fromId': '...', # order id to begin with # 'toId': '...', # order id to end up with # 'fromTimestamp': since, # 'toTimestamp': self.milliseconds(), # 'limit': limit, # default 100, max 100 } market = None if symbol is not None: market = self.market(symbol) request['symbol'] = market['id'] if limit is not None: request['limit'] = limit # default 100, max 100 if since is not None: request['fromTimestamp'] = since response = self.privateGetOrdersList(self.extend(request, params)) # # { # "code": "A10000", # "data": [ # { # "id": "608695678650028032", # "symbol": "BTC_BRL", # "type": "MARKET", # "side": "SELL", # "price": null, # "averagePrice": "0", # "amount": "0.123", # "filledAmount": "0", # "value": null, # "filledValue": "0", # "filledFee": "0", # "status": "REJECTED", # "timestamp": 1565165958796 # }, # ], # "message": "Success" # } # data = self.safe_value(response, 'data', []) return self.parse_orders(data, market, since, limit) def fetch_open_orders(self, symbol=None, since=None, limit=None, params={}): """ fetch all unfilled currently open orders :param str|None symbol: unified market symbol :param int|None since: the earliest time in ms to fetch open orders for :param int|None limit: the maximum number of open orders structures to retrieve :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `order structures <https://docs.ccxt.com/en/latest/manual.html#order-structure>` """ request = { 'status': 'SUBMITTED,PROCESSING,PARTIAL_FILLED,CANCELING', } return self.fetch_orders(symbol, since, limit, self.extend(request, params)) def fetch_closed_orders(self, symbol=None, since=None, limit=None, params={}): """ fetches information on multiple closed orders made by the user :param str|None symbol: unified market symbol of the market orders were made in :param int|None since: the earliest time in ms to fetch orders for :param int|None limit: the maximum number of orde structures to retrieve :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `order structures <https://docs.ccxt.com/en/latest/manual.html#order-structure>` """ request = { 'status': 'FILLED,CANCELED,REJECTED', } return self.fetch_orders(symbol, since, limit, self.extend(request, params)) def fetch_order_trades(self, id, symbol=None, since=None, limit=None, params={}): """ fetch all the trades made from a single order :param str id: order id :param str|None symbol: unified market symbol :param int|None since: the earliest time in ms to fetch trades for :param int|None limit: the maximum number of trades to retrieve :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `trade structures <https://docs.ccxt.com/en/latest/manual.html#trade-structure>` """ self.load_markets() request = { 'id': id, } response = self.privateGetOrdersFill(self.extend(request, params)) market = None if symbol is not None: market = self.market(symbol) data = self.safe_value(response, 'data', []) # # { # "code": "A10000", # "data": [ # { # "id": "608717046691139584", # "orderId": "608716957545402368", # "symbol": "BTC_BRL", # "side": "BUY", # "amount": "0.0988", # "price": "45514.76", # "fee": "0.0000988 BTC", # "feeAmount": "0.0000988", # "feeCurrency": "BTC", # "role": "MAKER", # "timestamp": 1565171053345 # }, # ], # "message": "Success" # } # return self.parse_trades(data, market, since, limit) def parse_order_status(self, status): statuses = { 'SUBMITTED': 'open', 'PROCESSING': 'open', 'PARTIAL_FILLED': 'open', 'CANCELING': 'open', 'FILLED': 'closed', 'CANCELED': 'canceled', 'REJECTED': 'rejected', } return self.safe_string(statuses, status, status) def parse_order(self, order, market=None): # # createOrder, fetchOrders, fetchOrder # # { # "amount": "0.001", # "averagePrice": null, # "filledAmount": "0", # "filledFee": "0", # "filledValue": "0", # "id": "870613508008464384", # "operator": "GTE", # "price": "210000", # "side": "BUY", # "status": "SUBMITTED", # "stopPrice": "211000", # "symbol": "BTC_BRL", # "timestamp": 1627612035528, # "type": "STOP_LIMIT", # "value": "210" # } # # cancelOrder # # { # "result": True # } # id = self.safe_string(order, 'id') amount = self.safe_string(order, 'amount') price = self.safe_string(order, 'price') cost = self.safe_string_2(order, 'filledValue', 'value') type = self.safe_string_lower(order, 'type') side = self.safe_string_lower(order, 'side') status = self.parse_order_status(self.safe_string(order, 'status')) timestamp = self.safe_integer(order, 'timestamp') average = self.safe_string(order, 'averagePrice') filled = self.safe_string(order, 'filledAmount') fee = None feeCost = self.safe_number(order, 'filledFee') if feeCost is not None: fee = { 'cost': feeCost, 'currency': None, } marketId = self.safe_string(order, 'symbol') symbol = self.safe_symbol(marketId, market, '_') stopPrice = self.safe_number(order, 'stopPrice') return self.safe_order({ 'id': id, 'clientOrderId': None, 'info': order, 'timestamp': timestamp, 'datetime': self.iso8601(timestamp), 'lastTradeTimestamp': None, 'symbol': symbol, 'type': type, 'timeInForce': None, 'postOnly': None, 'side': side, 'price': price, 'stopPrice': stopPrice, 'amount': amount, 'cost': cost, 'average': average, 'filled': filled, 'remaining': None, 'status': status, 'fee': fee, 'trades': None, }, market) def transfer(self, code, amount, fromAccount, toAccount, params={}): """ transfer currency internally between wallets on the same account :param str code: unified currency code :param float amount: amount to transfer :param str fromAccount: account to transfer from :param str toAccount: account to transfer to :param dict params: extra parameters specific to the novadax api endpoint :returns dict: a `transfer structure <https://docs.ccxt.com/en/latest/manual.html#transfer-structure>` """ self.load_markets() currency = self.currency(code) if fromAccount != 'main' and toAccount != 'main': raise ExchangeError(self.id + ' transfer() supports transfers between main account and subaccounts only') # master-transfer-in = from master account to subaccount # master-transfer-out = from subaccount to master account type = 'master-transfer-in' if (fromAccount == 'main') else 'master-transfer-out' request = { 'transferAmount': self.currency_to_precision(code, amount), 'currency': currency['id'], 'subId': toAccount if (type == 'master-transfer-in') else fromAccount, 'transferType': type, } response = self.privatePostAccountSubsTransfer(self.extend(request, params)) # # { # "code":"A10000", # "message":"Success", # "data":40 # } # transfer = self.parse_transfer(response, currency) transferOptions = self.safe_value(self.options, 'transfer', {}) fillResponseFromRequest = self.safe_value(transferOptions, 'fillResponseFromRequest', True) if fillResponseFromRequest: transfer['fromAccount'] = fromAccount transfer['toAccount'] = toAccount transfer['amount'] = amount return transfer def parse_transfer(self, transfer, currency=None): # # { # "code":"A10000", # "message":"Success", # "data":40 # } # id = self.safe_string(transfer, 'data') status = self.safe_string(transfer, 'message') currencyCode = self.safe_currency_code(None, currency) return { 'info': transfer, 'id': id, 'amount': None, 'code': currencyCode, # kept here for backward-compatibility, but will be removed soon 'currency': currencyCode, 'fromAccount': None, 'toAccount': None, 'timestamp': None, 'datetime': None, 'status': status, } def parse_transfer_status(self, status): statuses = { 'SUCCESS': 'pending', } return self.safe_string(statuses, status, 'failed') def withdraw(self, code, amount, address, tag=None, params={}): """ make a withdrawal :param str code: unified currency code :param float amount: the amount to withdraw :param str address: the address to withdraw to :param str|None tag: :param dict params: extra parameters specific to the novadax api endpoint :returns dict: a `transaction structure <https://docs.ccxt.com/en/latest/manual.html#transaction-structure>` """ tag, params = self.handle_withdraw_tag_and_params(tag, params) self.load_markets() currency = self.currency(code) request = { 'code': currency['id'], 'amount': self.currency_to_precision(code, amount), 'wallet': address, } if tag is not None: request['tag'] = tag response = self.privatePostAccountWithdrawCoin(self.extend(request, params)) # # { # "code":"A10000", # "data": "DR123", # "message":"Success" # } # return self.parse_transaction(response, currency) def fetch_accounts(self, params={}): """ fetch all the accounts associated with a profile :param dict params: extra parameters specific to the novadax api endpoint :returns dict: a dictionary of `account structures <https://docs.ccxt.com/en/latest/manual.html#account-structure>` indexed by the account type """ response = self.privateGetAccountSubs(params) # # { # "code": "A10000", # "data": [ # { # "subId": "CA648856083527372800", # "state": "Normal", # "subAccount": "003", # "subIdentify": "003" # } # ], # "message": "Success" # } # data = self.safe_value(response, 'data', []) result = [] for i in range(0, len(data)): account = data[i] accountId = self.safe_string(account, 'subId') type = self.safe_string(account, 'subAccount') result.append({ 'id': accountId, 'type': type, 'currency': None, 'info': account, }) return result def fetch_deposits(self, code=None, since=None, limit=None, params={}): """ fetch all deposits made to an account :param str|None code: unified currency code :param int|None since: the earliest time in ms to fetch deposits for :param int|None limit: the maximum number of deposits structures to retrieve :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `transaction structures <https://docs.ccxt.com/en/latest/manual.html#transaction-structure>` """ request = { 'type': 'coin_in', } return self.fetch_transactions(code, since, limit, self.extend(request, params)) def fetch_withdrawals(self, code=None, since=None, limit=None, params={}): """ fetch all withdrawals made from an account :param str|None code: unified currency code :param int|None since: the earliest time in ms to fetch withdrawals for :param int|None limit: the maximum number of withdrawals structures to retrieve :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `transaction structures <https://docs.ccxt.com/en/latest/manual.html#transaction-structure>` """ request = { 'type': 'coin_out', } return self.fetch_transactions(code, since, limit, self.extend(request, params)) def fetch_transactions(self, code=None, since=None, limit=None, params={}): """ fetch history of deposits and withdrawals :param str|None code: unified currency code for the currency of the transactions, default is None :param int|None since: timestamp in ms of the earliest transaction, default is None :param int|None limit: max number of transactions to return, default is None :param dict params: extra parameters specific to the novadax api endpoint :returns dict: a list of `transaction structure <https://docs.ccxt.com/en/latest/manual.html#transaction-structure>` """ self.load_markets() request = { # 'currency': currency['id'], # 'type': 'coin_in', # 'coin_out' # 'direct': 'asc', # 'desc' # 'size': limit, # default 100 # 'start': id, # offset id } currency = None if code is not None: currency = self.currency(code) request['currency'] = currency['id'] if limit is not None: request['size'] = limit response = self.privateGetWalletQueryDepositWithdraw(self.extend(request, params)) # # { # "code": "A10000", # "data": [ # { # "id": "DR562339304588709888", # "type": "COIN_IN", # "currency": "XLM", # "chain": "XLM", # "address": "GCUTK7KHPJC3ZQJ3OMWWFHAK2OXIBRD4LNZQRCCOVE7A2XOPP2K5PU5Q", # "addressTag": "1000009", # "amount": 1.0, # "state": "SUCCESS", # "txHash": "39210645748822f8d4ce673c7559aa6622e6e9cdd7073bc0fcae14b1edfda5f4", # "createdAt": 1554113737000, # "updatedAt": 1601371273000 # } # ], # "message": "Success" # } # data = self.safe_value(response, 'data', []) return self.parse_transactions(data, currency, since, limit) def parse_transaction_status(self, status): # Pending the record is wait broadcast to chain # x/M confirming the comfirming state of tx, the M is total confirmings needed # SUCCESS the record is success full # FAIL the record failed parts = status.split(' ') status = self.safe_string(parts, 1, status) statuses = { 'Pending': 'pending', 'confirming': 'pending', 'SUCCESS': 'ok', 'FAIL': 'failed', } return self.safe_string(statuses, status, status) def parse_transaction(self, transaction, currency=None): # # withdraw # # { # "code":"A10000", # "data": "DR123", # "message":"Success" # } # # fetchTransactions # # { # "id": "DR562339304588709888", # "type": "COIN_IN", # "currency": "XLM", # "chain": "XLM", # "address": "GCUTK7KHPJC3ZQJ3OMWWFHAK2OXIBRD4LNZQRCCOVE7A2XOPP2K5PU5Q", # "addressTag": "1000009", # "amount": 1.0, # "state": "SUCCESS", # "txHash": "39210645748822f8d4ce673c7559aa6622e6e9cdd7073bc0fcae14b1edfda5f4", # "createdAt": 1554113737000, # "updatedAt": 1601371273000 # } # id = self.safe_string_2(transaction, 'id', 'data') type = self.safe_string(transaction, 'type') if type == 'COIN_IN': type = 'deposit' elif type == 'COIN_OUT': type = 'withdraw' amount = self.safe_number(transaction, 'amount') address = self.safe_string(transaction, 'address') tag = self.safe_string(transaction, 'addressTag') txid = self.safe_string(transaction, 'txHash') timestamp = self.safe_integer(transaction, 'createdAt') updated = self.safe_integer(transaction, 'updatedAt') currencyId = self.safe_string(transaction, 'currency') code = self.safe_currency_code(currencyId, currency) status = self.parse_transaction_status(self.safe_string(transaction, 'state')) network = self.safe_string(transaction, 'chain') return { 'info': transaction, 'id': id, 'currency': code, 'amount': amount, 'network': network, 'address': address, 'addressTo': address, 'addressFrom': None, 'tag': tag, 'tagTo': tag, 'tagFrom': None, 'status': status, 'type': type, 'updated': updated, 'txid': txid, 'timestamp': timestamp, 'datetime': self.iso8601(timestamp), 'fee': None, } def fetch_my_trades(self, symbol=None, since=None, limit=None, params={}): """ fetch all trades made by the user :param str|None symbol: unified market symbol :param int|None since: the earliest time in ms to fetch trades for :param int|None limit: the maximum number of trades structures to retrieve :param dict params: extra parameters specific to the novadax api endpoint :returns [dict]: a list of `trade structures <https://docs.ccxt.com/en/latest/manual.html#trade-structure>` """ self.load_markets() request = { # 'orderId': id, # Order ID, string # 'symbol': market['id'], # The trading symbol, like BTC_BRL, string # 'fromId': fromId, # Search fill id to begin with, string # 'toId': toId, # Search fill id to end up with, string # 'fromTimestamp': since, # Search order fill time to begin with, in milliseconds, string # 'toTimestamp': self.milliseconds(), # Search order fill time to end up with, in milliseconds, string # 'limit': limit, # The number of fills to return, default 100, max 100, string # 'accountId': subaccountId, # Sub account ID, if not informed, the fills will be return under master account, string } market = None if symbol is not None: market = self.market(symbol) request['symbol'] = market['id'] if limit is not None: request['limit'] = limit if since is not None: request['fromTimestamp'] = since response = self.privateGetOrdersFills(self.extend(request, params)) # # { # "code": "A10000", # "data": [ # { # "id": "608717046691139584", # "orderId": "608716957545402368", # "symbol": "BTC_BRL", # "side": "BUY", # "amount": "0.0988", # "price": "45514.76", # "fee": "0.0000988 BTC", # "feeAmount": "0.0000988", # "feeCurrency": "BTC", # "role": "MAKER", # "timestamp": 1565171053345 # }, # ], # "message": "Success" # } # data = self.safe_value(response, 'data', []) return self.parse_trades(data, market, since, limit) def sign(self, path, api='public', method='GET', params={}, headers=None, body=None): request = '/' + self.version + '/' + self.implode_params(path, params) url = self.urls['api'][api] + request query = self.omit(params, self.extract_params(path)) if api == 'public': if query: url += '?' + self.urlencode(query) elif api == 'private': self.check_required_credentials() timestamp = str(self.milliseconds()) headers = { 'X-Nova-Access-Key': self.apiKey, 'X-Nova-Timestamp': timestamp, } queryString = None if method == 'POST': body = self.json(query) queryString = self.hash(self.encode(body), 'md5') headers['Content-Type'] = 'application/json' else: if query: url += '?' + self.urlencode(query) queryString = self.urlencode(self.keysort(query)) auth = method + "\n" + request + "\n" + queryString + "\n" + timestamp # eslint-disable-line quotes headers['X-Nova-Signature'] = self.hmac(self.encode(auth), self.encode(self.secret)) return {'url': url, 'method': method, 'body': body, 'headers': headers} def handle_errors(self, code, reason, url, method, headers, body, response, requestHeaders, requestBody): if response is None: return # # {"code":"A10003","data":[],"message":"Authentication failed, Invalid accessKey."} # errorCode = self.safe_string(response, 'code') if errorCode != 'A10000': message = self.safe_string(response, 'message') feedback = self.id + ' ' + body self.throw_exactly_matched_exception(self.exceptions['exact'], errorCode, feedback) self.throw_broadly_matched_exception(self.exceptions['broad'], message, feedback) raise ExchangeError(feedback) # unknown message

"""Unit tests for the write transform.""" import logging import unittest import apache_beam as beam from apache_beam.io import iobase from apache_beam.testing.test_pipeline import TestPipeline from apache_beam.testing.util import assert_that, is_empty from apache_beam.transforms.ptransform import PTransform class _TestSink(iobase.Sink): TEST_INIT_RESULT = 'test_init_result' def __init__(self, return_init_result=True, return_write_results=True): self.return_init_result = return_init_result self.return_write_results = return_write_results def initialize_write(self): if self.return_init_result: return _TestSink.TEST_INIT_RESULT def finalize_write(self, init_result, writer_results): self.init_result_at_finalize = init_result self.write_results_at_finalize = writer_results def open_writer(self, init_result, uid): writer = _TestWriter(init_result, uid, self.return_write_results) return writer class _TestWriter(iobase.Writer): STATE_UNSTARTED, STATE_WRITTEN, STATE_CLOSED = 0, 1, 2 TEST_WRITE_RESULT = 'test_write_result' def __init__(self, init_result, uid, return_write_results=True): self.state = _TestWriter.STATE_UNSTARTED self.init_result = init_result self.uid = uid self.write_output = [] self.return_write_results = return_write_results def close(self): assert self.state in ( _TestWriter.STATE_WRITTEN, _TestWriter.STATE_UNSTARTED) self.state = _TestWriter.STATE_CLOSED if self.return_write_results: return _TestWriter.TEST_WRITE_RESULT def write(self, value): if self.write_output: assert self.state == _TestWriter.STATE_WRITTEN else: assert self.state == _TestWriter.STATE_UNSTARTED self.state = _TestWriter.STATE_WRITTEN self.write_output.append(value) class WriteToTestSink(PTransform): def __init__(self, return_init_result=True, return_write_results=True): self.return_init_result = return_init_result self.return_write_results = return_write_results self.last_sink = None self.label = 'write_to_test_sink' def expand(self, pcoll): self.last_sink = _TestSink(return_init_result=self.return_init_result, return_write_results=self.return_write_results) return pcoll | beam.io.Write(self.last_sink) class WriteTest(unittest.TestCase): DATA = ['some data', 'more data', 'another data', 'yet another data'] def _run_write_test(self, data, return_init_result=True, return_write_results=True): write_to_test_sink = WriteToTestSink(return_init_result, return_write_results) with TestPipeline() as p: result = p | beam.Create(data) | write_to_test_sink | beam.Map(list) assert_that(result, is_empty()) sink = write_to_test_sink.last_sink self.assertIsNotNone(sink) def test_write(self): self._run_write_test(WriteTest.DATA) def test_write_with_empty_pcollection(self): data = [] self._run_write_test(data) def test_write_no_init_result(self): self._run_write_test(WriteTest.DATA, return_init_result=False) def test_write_no_write_results(self): self._run_write_test(WriteTest.DATA, return_write_results=False) if __name__ == '__main__': logging.getLogger().setLevel(logging.INFO) unittest.main()

"""Classes related to Rivendell Artists. Artist uses sqlalchemy to represent a single artist and various aspects about it as used in the Scheduler. """ from sqlalchemy import Column from sqlalchemy import Integer from sqlalchemy import Unicode from sqlalchemy.ext.declarative import declarative_base from sqlalchemy import create_engine from sqlalchemy.orm import sessionmaker Base = declarative_base() class Artist(Base): """An artist. Contains a single artist and its related scheduling information, such as the "age" to calculate "artist separation" for the generated merge file. Maintains a persistent list of artists and the number of units ago each was last scheduled. """ __tablename__ = 'artists' name = Column(Unicode(34), primary_key=True) age = Column(Integer, default=1) def __repr__(self): """Represent ourself to the world.""" return f"'{self.name}':{self.age}" def reset(self): """Reset age to 0. This happens when the artist gets scheduled.""" self.age = 1 def __add__(self, value): """Increment the age counter for the named artist.""" self.age = self.age + value return self def __iadd__(self, value): """In-place increment (+=) of age counter for the named artist.""" self.age += value return self def __sub__(self, value): """Decrement the artist's age counter.""" self.age = self.age - value return self def __isub__(self, value): """In-place decrement (-=) of artist's age counter.""" self.age -= value return self class Artists(): """The collection of all artists.""" def __init__(self, method, location, separation): """Make a group of artists. :param method: The database backend method (sqlite, mysql, etc.). :param location: The location of the backend database. :param separation: The integer value representing the number of "units" that must transpire before an artist may be scheduled. """ self.method = method self.location = location self.separation = separation self.engine = create_engine(method + '://' + location, echo=False) session = sessionmaker(bind=self.engine) self.session = session() Base.metadata.create_all(self.engine) @property def all(self): """Read the data source and return all the rows a dictionary.""" return {a.name: a.age for a in self.session.query(Artist).all()} def add(self, artist): """Add this artist to the list.""" try: new_artist = Artist(name=artist.lower(), age=1) self.session.add(new_artist) #self.session.commit() except: print("Artist: ERROR: unable to add new artist '{a}'." .format(a=artist)) return False return True def bump(self, artist): """Increment the age counter for all artists in the list. Then reset the counter for 'artist' to 1 since this is the artist we are scheduling. """ for one_of_all_artists in self.session.query(Artist).all(): one_of_all_artists += 1 if artist is None: artist = 'xx-missing-artist-xx' this_artist = self.session.query(Artist).filter_by(name=artist.lower()).first() if this_artist is None: self.add(artist) else: this_artist.reset() def ok_to_schedule(self, artist): """Whether it's OK to schedule this artist. Has this artist been scheduled more recently than "separation" units? """ if artist is None: artist = 'xx-missing-artist-xx' a = self.session.query(Artist).filter_by(name=artist.lower()).first() if a is None: # Apparently we have not yet seen this artist. if not self.add(artist): return False return True if a.age < self.separation: return False return True

from django.conf.urls import include, url from django.contrib import admin urlpatterns = [ url(r'^instavent/', include('weekend.urls', namespace='instavent')), url(r'^admin/', include(admin.site.urls)), ]

from appengine.memcache.guestbook import main from tests import DatastoreTestbedCase import webapp2 class TestHandlers(DatastoreTestbedCase): def test_hello(self): # Build a request object passing the URI path to be tested. # You can also pass headers, query arguments etc. request = webapp2.Request.blank('/') # Get a response for that request. response = request.get_response(main.app) # Let's check if the response is correct. self.assertEqual(response.status_int, 200)

import json import libvirt import sys from lxml import etree from . import virt_ifaces def _handle_event(conn, domain, event, detail, opaque): msg = dict( type='libvirt', vm=dict( name=domain.name(), uuid=domain.UUIDString(), uri=opaque['uri'], ), ) if event == libvirt.VIR_DOMAIN_EVENT_DEFINED: xml_s = domain.XMLDesc(flags=0) tree = etree.fromstring(xml_s) ifaces = virt_ifaces.get_interfaces(tree) ifaces = list(ifaces) msg['vm']['interfaces'] = ifaces elif event == libvirt.VIR_DOMAIN_EVENT_UNDEFINED: pass else: print >>sys.stderr, \ ('unknown event:' + ' Domain {name} event={event} detail={detail}'.format( name=domain.name(), event=event, detail=detail, ) ) return opaque['callback'](msg) def getAllDomains(conn): """ List and get all domains, active or not. The python bindings don't seem to have this at version 0.9.8-2ubuntu17.1 and a combination of listDefinedDomains and listDomainsID is just miserable. http://libvirt.org/html/libvirt-libvirt.html#virConnectListAllDomains Also fetch the actual domain object, as we'll need the xml. """ for name in conn.listDefinedDomains(): try: domain = conn.lookupByName(name) except libvirt.libvirtError as e: if e.get_error_code() == libvirt.VIR_ERR_NO_DOMAIN: # lost a race, someone undefined the domain # between listing names and fetching details pass else: raise else: yield domain for id_ in conn.listDomainsID(): try: domain = conn.lookupByID(id_) except libvirt.libvirtError as e: if e.get_error_code() == libvirt.VIR_ERR_NO_DOMAIN: # lost a race, someone undefined the domain # between listing names and fetching details pass else: raise else: yield domain def monitor(uris, callback): libvirt.virEventRegisterDefaultImpl() conns = {} for uri in uris: conn = libvirt.openReadOnly(uri) conns[uri] = conn conn.setKeepAlive(5, 3) conn.domainEventRegisterAny( dom=None, eventID=libvirt.VIR_DOMAIN_EVENT_ID_LIFECYCLE, cb=_handle_event, opaque=dict(uri=uri, callback=callback), ) for uri, conn in conns.iteritems(): for domain in getAllDomains(conn): # inject fake defined event for each domain that # exists at startup _handle_event( conn=conn, domain=domain, event=libvirt.VIR_DOMAIN_EVENT_DEFINED, detail=None, opaque=dict(uri=uri, callback=callback), ) # signal that all current vms have been observed; that is, pruning # old entries is safe callback(dict(type='libvirt_complete')) while True: libvirt.virEventRunDefaultImpl() for uri, conn in conns.iteritems(): if not conn.isAlive() == 1: # conn.close() tends to fail at this point, so don't # even try raise RuntimeError( 'Lost connection to {uri}'.format(uri=uri), ) def main(): def cb(msg): sys.stdout.write(json.dumps(msg) + '\n') sys.stdout.flush() uris = sys.argv[1:] monitor(uris, callback=cb) if __name__ == "__main__": main()

from __future__ import print_function import sys import argparse import maskgen.scenario_model from maskgen.graph_rules import processProjectProperties from maskgen.batch import pick_projects, BatchProcessor from maskgen.userinfo import get_username, setPwdX,CustomPwdX from maskgen.validation.core import hasErrorMessages from maskgen.preferences_initializer import initialize from maskgen.external.exporter import ExportManager import logging export_manager = ExportManager() def upload_projects(args, project): """ Uploads project directories to S3 bucket :param s3dir: bucket/dir S3 location :param dir: directory of project directories :param qa: bool for if the projects need to be qa'd :param username: export and qa username :param updatename: change the project username to match username value :param organization: change project organization """ s3dir = args.s3 qa = args.qa username = args.username organization = args.organization updatename = args.updatename ignore_errors = args.ignore log = logging.getLogger('maskgen') redactions= [redaction.strip() for redaction in args.redacted.split(',')] scModel = maskgen.scenario_model.loadProject(project) if username is None: setPwdX(CustomPwdX(scModel.getGraph().getDataItem("username"))) else: if updatename: oldValue = scModel.getProjectData('username') scModel.setProjectData('creator', username) scModel.setProjectData('username', username) scModel.getGraph().replace_attribute_value('username', oldValue, username) if organization is not None: scModel.setProjectData('organization', organization) scModel.save() processProjectProperties(scModel) if qa: username = username if username is not None else get_username() scModel.set_validation_properties("yes", username, "QA redone via Batch Updater") errors = [] if args.skipValidation else scModel.validate(external=True) if ignore_errors or not hasErrorMessages(errors, contentCheck=lambda x: len([m for m in redactions if m not in x]) == 0 ): path, error_list = scModel.export('.', redacted=redactions) if path is not None and (ignore_errors or len(error_list) == 0): export_manager.sync_upload(path, s3dir) if len(error_list) > 0: for err in error_list: log.error(str(err)) raise ValueError('Export Failed') return errors def main(argv=sys.argv[1:]): from functools import partial parser = argparse.ArgumentParser() parser.add_argument('--threads', default=1, required=False, help='number of projects to build') parser.add_argument('-d', '--projects', help='directory of projects') parser.add_argument('-s', '--s3', help='bucket/path of s3 storage', required=False) parser.add_argument('--qa', help="option argument to QA the journal prior to uploading", required=False, action="store_true") parser.add_argument('-u', '--username', help="optional username", required=False) parser.add_argument('-o', '--organization', help="update organization in project", required=False) parser.add_argument('-n', '--updatename', help="should update username in project", required=False, action="store_true") parser.add_argument('-r', '--redacted', help='comma separated list of file argument to exclude from export', default='', required=False) parser.add_argument('-v', '--skipValidation', help='skip validation',action="store_true") parser.add_argument('-i', '--ignore', help='ignore errors', default='', required=False) parser.add_argument('--completeFile', default=None, help='A file recording completed projects') args = parser.parse_args(argv) iterator = pick_projects(args.projects) processor = BatchProcessor(args.completeFile, iterator, threads=args.threads) func = partial(upload_projects, args) return processor.process(func) if __name__ == '__main__': main(sys.argv[1:])

import unittest from pypika import ( Case, Field, Table, functions as fn, ) from pypika.terms import ( Negative, ValueWrapper, ) class IsAggregateTests(unittest.TestCase): def test__field_is_not_aggregate(self): v = Field("foo") self.assertFalse(v.is_aggregate) def test__constant_is_aggregate_none(self): v = ValueWrapper(100) self.assertIsNone(v.is_aggregate) def test__constant_arithmetic_is_aggregate_none(self): v = ValueWrapper(100) + ValueWrapper(100) self.assertIsNone(v.is_aggregate) def test__field_arithmetic_is_not_aggregate(self): v = Field("foo") + Field("bar") self.assertFalse(v.is_aggregate) def test__field_arithmetic_constant_is_not_aggregate(self): v = Field("foo") + 1 self.assertFalse(v.is_aggregate) def test__agg_func_is_aggregate(self): v = fn.Sum(Field("foo")) self.assertTrue(v.is_aggregate) def test__negative_agg_func_is_aggregate(self): v = Negative(fn.Sum(Field("foo"))) self.assertTrue(v.is_aggregate) def test__agg_func_arithmetic_is_aggregate(self): v = fn.Sum(Field("foo")) / fn.Sum(Field("foo")) self.assertTrue(v.is_aggregate) def test__mixed_func_arithmetic_is_not_aggregate(self): v = Field("foo") / fn.Sum(Field("foo")) self.assertFalse(v.is_aggregate) def test__func_arithmetic_constant_is_not_aggregate(self): v = 1 / fn.Sum(Field("foo")) self.assertTrue(v.is_aggregate) def test__agg_case_criterion_is_aggregate(self): v = Case().when(fn.Sum(Field("foo")) > 666, 'More than 666').else_('Less than 666') self.assertTrue(v.is_aggregate) def test__agg_case_is_aggregate(self): v = ( Case() .when(Field("foo") == 1, fn.Sum(Field("bar"))) .when(Field("foo") == 2, fn.Sum(Field("fiz"))) .else_(fn.Sum(Field("fiz"))) ) self.assertTrue(v.is_aggregate) def test__mixed_case_is_not_aggregate(self): v = Case().when(Field("foo") == 1, fn.Sum(Field("bar"))).when(Field("foo") == 2, Field("fiz")) self.assertFalse(v.is_aggregate) def test__case_mixed_else_is_not_aggregate(self): v = ( Case() .when(Field("foo") == 1, fn.Sum(Field("bar"))) .when(Field("foo") == 2, fn.Sum(Field("fiz"))) .else_(Field("fiz")) ) self.assertFalse(v.is_aggregate) def test__case_mixed_constant_is_not_aggregate(self): v = Case().when(Field("foo") == 1, fn.Sum(Field("bar"))).when(Field("foo") == 2, fn.Sum(Field("fiz"))).else_(1) self.assertTrue(v.is_aggregate) def test__case_with_field_is_not_aggregate(self): v = Case().when(Field("foo") == 1, 1).when(Field("foo") == 2, 2).else_(3) self.assertFalse(v.is_aggregate) def test__case_with_single_aggregate_field_in_one_criterion_is_aggregate(self): v = Case().when(Field("foo") == 1, 1).when(fn.Sum(Field("foo")) == 2, 2).else_(3) self.assertTrue(v.is_aggregate) def test__non_aggregate_function_with_aggregated_arg(self): t = Table("abc") expr = fn.Sqrt(fn.Sum(t.a)) self.assertTrue(expr.is_aggregate) def test_complicated(self): t = Table("abc") is_placebo = t.campaign_extra_info == "placebo" pixel_mobile_search = Case().when(is_placebo, t.action_fb_pixel_search + t.action_fb_mobile_search) unique_impressions = Case().when(is_placebo, t.unique_impressions) v = fn.Sum(pixel_mobile_search) / fn.Sum(unique_impressions) - 1.96 * fn.Sqrt( 1 / fn.Sum(unique_impressions) * fn.Sum(pixel_mobile_search) / fn.Sum(unique_impressions) * (1 - fn.Sum(pixel_mobile_search) / fn.Sum(unique_impressions)) ) self.assertTrue(v.is_aggregate)

import sys import matplotlib from matplotlib import style import cloudside matplotlib.use("agg") style.use("classic") if "--strict" in sys.argv: sys.argv.remove("--strict") status = cloudside.teststrict(*sys.argv[1:]) else: status = cloudside.test(*sys.argv[1:]) sys.exit(status)

""" Check for unique lists within an array """ def unique_list(array, elements_to_check=0): """ :param array: Array of lists to be checked :param elements_to_check: range of numbers corresponding to indices of list :return: new unique array """ n_rows = len(array) unique_array = [] if elements_to_check == 0: elements = range(len(array[0])) else: elements = elements_to_check # for each row for i in range(n_rows): row_a = array[i] equal_row = False # for all subsequent rows for j in range(i + 1, n_rows): row_b = array[j] # check if each element in rows are equal, breaking after finding even one unequal element for k in elements: equal_element = True if row_a[k] != row_b[k]: equal_element = False break if equal_element == True: equal_row = True break if equal_row == True: pass # append all unique rows to new array else: unique_array.append(row_a) return unique_array

import RPi.GPIO as GPIO import time import queue as Queue # https://pymotw.com/2/Queue/ from functools import partial from threading import Thread #------------------------------------------------------------------------ # use the raspi board pin number #GPIO.setmode(GPIO.BOARD) # use the gpio number GPIO.setmode(GPIO.BCM) Taster = 25 #------------------------------------------------------------------------ def interrupt_event(qF, qR, pin): if GPIO.input(pin) == GPIO.HIGH: qR.put(pin) else: qF.put(pin) def rising_edge(queue): while running: if not queue.empty(): pin = queue.get() zeit = time.strftime("%d.%m.%Y %H:%M:%S") print("{} Rising edge detected on {}".format(zeit, pin)) time.sleep(0.5) def falling_edge(queue): while running: if not queue.empty(): pin = queue.get() zeit = time.strftime("%d.%m.%Y %H:%M:%S") print("{} Falling edge detected on {}".format(zeit, pin)) time.sleep(0.5) def main(): queueFalling = Queue.Queue() queueRising = Queue.Queue() rising_thread = Thread(target=rising_edge, args=(queueRising,)) falling_thread = Thread(target=falling_edge, args=(queueFalling,)) rising_thread.start() falling_thread.start() GPIO.setup(Taster, GPIO.IN) GPIO.add_event_detect(Taster, GPIO.BOTH, callback=partial(interrupt_event, queueFalling, queueRising), bouncetime=200) #keep script running while True: time.sleep(5) if __name__ == '__main__': try: running = True main() except (KeyboardInterrupt, SystemExit): running = False print("\nQuit\n") GPIO.cleanup()

from google.cloud import monitoring_v3 def sample_get_alert_policy(): # Create a client client = monitoring_v3.AlertPolicyServiceClient() # Initialize request argument(s) request = monitoring_v3.GetAlertPolicyRequest( name="name_value", ) # Make the request response = client.get_alert_policy(request=request) # Handle the response print(response) # [END monitoring_v3_generated_AlertPolicyService_GetAlertPolicy_sync]

"""@package src.wi.views.user.user @author Piotr Wójcik @date 31.01.2014 """ from django.contrib import messages from django.shortcuts import render_to_response, redirect from django.template import RequestContext from django.template.loader import render_to_string from django.utils.translation import ugettext as _ from django.views.decorators.csrf import csrf_protect from wi.commontags.templatetags.templatetags import filesizeformatmb from wi.forms.user import CMAuthenticationForm, HelpForm, PasswordChangeForm, \ AccountDataEdit from wi.utils import get_dict_from_list, messages_ajax from wi.utils.decorators import django_view, user_permission from wi.utils.exceptions import RestErrorException from wi.utils.messages_ajax import ajax_request from wi.utils.messages_codes import get_message from wi.utils.states import message_levels_reversed from wi.utils.views import prep_data @django_view @user_permission def change_cm(request, cm_id, success_url='mai_main'): """ View changing used CM. """ request.session['user'].cm_id = int(cm_id) request.session.modified = True messages.success(request, _('Cluster Manager changed.')) return redirect(request.META['HTTP_REFERER'] or success_url) @django_view @ajax_request @user_permission def get_messages(request): """ Ajax view fetching user messages. """ if request.method == 'POST': response = prep_data('user/message/get_list/', request.session) for item in response: item['text'] = get_message(item['code'], item['params']) item['level'] = message_levels_reversed[item['level']] return messages_ajax.success(response) @django_view @ajax_request @user_permission def acc_ajax_get_user_data(request): """ Ajax view. Returns user account data. """ if request.method == 'GET': rest_data = prep_data({'user': 'user/user/get_my_data/', 'cms': 'guest/cluster/list_names/' }, request.session) user_data = rest_data['user'] users_cm = get_dict_from_list(rest_data['cms'], user_data['default_cluster_id'], key='cluster_id') if users_cm is None: raise Exception('User\'s default_cluster_id=%d is not a valid CM id.' % user_data['default_cluster_id']) user_data['default_cluster_id'] = users_cm['name'] return messages_ajax.success(user_data) @django_view @ajax_request @user_permission @csrf_protect def acc_ajax_account_data_edit(request, template_name='generic/form.html', form_class=AccountDataEdit): """ Ajax view for user account data editing. """ rest_data = prep_data({'cms': 'guest/cluster/list_names/'}, request.session) if request.method == 'POST': form = form_class(data=request.POST, rest_data=rest_data) if form.is_valid(): prep_data({'user': ('user/user/edit/', form.cleaned_data)}, request.session) request.session['user'].email = form.cleaned_data['email'] request.session['user'].default_cluster_id = form.cleaned_data['default_cluster_id'] request.session.modified = True return messages_ajax.success(_('Account data edited.')) else: form = form_class(data={'email': request.session['user'].email, 'default_cluster_id': request.session['user'].default_cluster_id}, rest_data=rest_data) return messages_ajax.success(render_to_string(template_name, {'form': form, 'text': '', 'confirmation': _('Save')}, context_instance=RequestContext(request)), status=1) @django_view @ajax_request @user_permission def acc_ajax_get_user_quotas(request): """ Ajax view for fetching users' quotas. """ if request.method == 'GET': quota = prep_data('user/user/check_quota/', request.session) quota['memory'] = filesizeformatmb(quota['memory']) quota['used_memory'] = filesizeformatmb(quota['used_memory']) quota['storage'] = filesizeformatmb(quota['storage']) quota['used_storage'] = filesizeformatmb(quota['used_storage']) return messages_ajax.success(quota) @django_view @csrf_protect @user_permission def acc_password_change(request, template_name='account/password_change_form.html', password_change_form=PasswordChangeForm): """ View for password changing (for logged users). """ if request.method == "POST": form = password_change_form(user=request.session['user'], data=request.POST) if form.is_valid(): new_password = form.cleaned_data['new_password1'] try: prep_data(('user/user/set_password/', {'new_password': new_password}), request.session) except RestErrorException as ex: messages.error(request, ex.value) request.session['user'].set_password(new_password) request.session.modified = True return redirect('acc_password_change_done') else: form = password_change_form(user=request.session['user']) return render_to_response(template_name, {'form': form}, context_instance=RequestContext(request)) @django_view @user_permission def hlp_form(request, form_class=HelpForm, template_name='help/form.html'): """ View handling help form. """ if request.method == 'POST': form = form_class(data=request.POST) if form.is_valid(): topic, issue, email = form.cleaned_data['topic'], form.cleaned_data['issue'], form.cleaned_data['email'] name = str(request.session.get('user', form.cleaned_data['firstlast'])) topic += _(' from user:') + name + ', email: ' + email dictionary = {'issue': issue, 'topic': topic} try: prep_data(('user/user/send_issue/', dictionary), request.session) except Exception: return redirect('hlp_issue_error') return redirect('hlp_issue_sent') else: form = form_class() rest_data = prep_data('guest/user/is_mailer_active/', request.session) return render_to_response(template_name, dict({'form': form}.items() + rest_data.items()), context_instance=RequestContext(request))

""" Django settings for elf project. For more information on this file, see https://docs.djangoproject.com/en/1.7/topics/settings/ For the full list of settings and their values, see https://docs.djangoproject.com/en/1.7/ref/settings/ """ # Build paths inside the project like this: os.path.join(BASE_DIR, ...) import os BASE_DIR = os.path.dirname(os.path.dirname(__file__)) # Quick-start development settings - unsuitable for production # See https://docs.djangoproject.com/en/1.7/howto/deployment/checklist/ # SECURITY WARNING: keep the secret key used in production secret! SECRET_KEY = 'pdj&pd=xh^e3o#g6#=8o1bk=6jbj^6683q^-xl)c5)0v610p+z' # SECURITY WARNING: don't run with debug turned on in production! DEBUG = True TEMPLATE_DEBUG = True ALLOWED_HOSTS = [] # Application definition INSTALLED_APPS = ( 'django.contrib.admin', 'django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.messages', 'django.contrib.staticfiles', # master 'master', # apps 'todo', 'event', 'hours10k', 'mood', 'dream', 'diary', ) MIDDLEWARE_CLASSES = ( 'django.contrib.sessions.middleware.SessionMiddleware', 'django.middleware.common.CommonMiddleware', 'django.middleware.csrf.CsrfViewMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', 'django.contrib.auth.middleware.SessionAuthenticationMiddleware', 'django.contrib.messages.middleware.MessageMiddleware', 'django.middleware.clickjacking.XFrameOptionsMiddleware', ) ROOT_URLCONF = 'elf.urls' WSGI_APPLICATION = 'elf.wsgi.application' # Database # https://docs.djangoproject.com/en/1.7/ref/settings/#databases DATABASES = { 'default': { 'ENGINE': 'django.db.backends.sqlite3', 'NAME': os.path.join(BASE_DIR, 'db.sqlite3'), } } # Internationalization # https://docs.djangoproject.com/en/1.7/topics/i18n/ LANGUAGE_CODE = 'en-us' TIME_ZONE = 'UTC' USE_I18N = True USE_L10N = True USE_TZ = True # Static files (CSS, JavaScript, Images) # https://docs.djangoproject.com/en/1.7/howto/static-files/ STATIC_URL = '/static/' STATIC_ROOT = os.path.join(os.path.dirname(BASE_DIR), 'static', 'static') MEDIA_ROOT = os.path.join(os.path.dirname(BASE_DIR), 'static', 'media') # Template DIR TEMPLATE_DIRS = ( os.path.join(os.path.dirname(BASE_DIR), 'static', 'templates'), ) if DEBUG: MEDIA_URL = '/media/' MEDIA_ROOT = os.path.join(os.path.dirname(BASE_DIR), 'static', 'media') STATIC_URL = '/static/' STATIC_ROOT = os.path.join(os.path.dirname(BASE_DIR), 'static', 'static') TEMPLATE_ROOT = os.path.join(os.path.dirname(BASE_DIR), 'static', 'templates') STATICFILES_DIRS = ( os.path.join(os.path.dirname(BASE_DIR), 'static'), )

from tapiriik.services.ratelimiting import RateLimit, RateLimitExceededException from tapiriik.services.api import ServiceException, UserExceptionType, UserException class ServiceAuthenticationType: OAuth = "oauth" UsernamePassword = "direct" class InvalidServiceOperationException(Exception): pass class ServiceBase: # Short ID used everywhere in logging and DB storage ID = None # Alias ID in case somebody (not naming names) typoed a service name and needs to keep the old ID functional IDAliases = None # Full display name given to users DisplayName = None # 2-3 letter abbreviated name DisplayAbbreviation = None # One of ServiceAuthenticationType AuthenticationType = None # Enables extended auth ("Save these details") functionality RequiresExtendedAuthorizationDetails = False # URL to direct user to when starting authentication UserAuthorizationURL = None # Don't attempt to IFrame the OAuth login AuthenticationNoFrame = False # List of ActivityTypes SupportedActivities = None # Used only in tests SupportsHR = SupportsCalories = SupportsCadence = SupportsTemp = SupportsPower = False # Does it? ReceivesActivities = True # Any at all? ReceivesStationaryActivities = True # Manually-entered? ReceivesNonGPSActivitiesWithOtherSensorData = True # Trainer-ish? SuppliesActivities = True # Services with this flag unset will receive an explicit date range for activity listing, # rather than the exhaustive flag alone. They are also processed after all other services. # An account must have at least one service that supports exhaustive listing. SupportsExhaustiveListing = True SupportsActivityDeletion = False # Causes synchronizations to be skipped until... # - One is triggered (via IDs returned by ExternalIDsForPartialSyncTrigger or PollPartialSyncTrigger) # - One is necessitated (non-partial sync, possibility of uploading new activities, etc) PartialSyncRequiresTrigger = False PartialSyncTriggerRequiresSubscription = False PartialSyncTriggerStatusCode = 204 # Timedelta for polling to happen at (or None for no polling) PartialSyncTriggerPollInterval = None # How many times to call the polling method per interval (this is for the multiple_index kwarg) PartialSyncTriggerPollMultiple = 1 # How many times should we try each operation on an activity before giving up? # (only ever tries once per sync run - so ~1 hour interval on average) UploadRetryCount = 5 DownloadRetryCount = 5 # Global rate limiting options # For when there's a limit on the API key itself GlobalRateLimits = [] @property def PartialSyncTriggerRequiresPolling(self): return self.PartialSyncRequiresTrigger and self.PartialSyncTriggerPollInterval # Adds the Setup button to the service configuration pane, and not much else Configurable = False # Defaults for per-service configuration ConfigurationDefaults = {} # For the diagnostics dashboard UserProfileURL = UserActivityURL = None def RequiresConfiguration(self, serviceRecord): # Should convert this into a real property return False # True means no sync until user configures def WebInit(self): pass # Return an URL pointing directly to the specified activity on the remote site def UserUploadedActivityURL(self, uploadId): raise NotImplementedError def GenerateUserAuthorizationURL(self, session, level=None): raise NotImplementedError def Authorize(self, email, password, store=False): raise NotImplementedError def RevokeAuthorization(self, serviceRecord): raise NotImplementedError def DownloadActivityList(self, serviceRecord, exhaustive_start_date=None): raise NotImplementedError def DownloadActivity(self, serviceRecord, activity): raise NotImplementedError # Should return an uploadId for storage and potential use in DeleteActivity def UploadActivity(self, serviceRecord, activity): raise NotImplementedError def DeleteActivity(self, serviceRecord, uploadId): raise NotImplementedError def DeleteCachedData(self, serviceRecord): raise NotImplementedError def SubscribeToPartialSyncTrigger(self, serviceRecord): if self.PartialSyncRequiresTrigger: raise NotImplementedError else: raise InvalidServiceOperationException def UnsubscribeFromPartialSyncTrigger(self, serviceRecord): if self.PartialSyncRequiresTrigger: raise NotImplementedError else: raise InvalidServiceOperationException def ShouldForcePartialSyncTrigger(self, serviceRecord): if self.PartialSyncRequiresTrigger: return False else: raise InvalidServiceOperationException def PollPartialSyncTrigger(self, multiple_index): if self.PartialSyncRequiresTrigger and self.PartialSyncTriggerPollInterval: raise NotImplementedError else: raise InvalidServiceOperationException def ExternalIDsForPartialSyncTrigger(self, req): raise NotImplementedError def PartialSyncTriggerGET(self, req): from django.http import HttpResponse return HttpResponse(status=204) def ConfigurationUpdating(self, serviceRecord, newConfig, oldConfig): pass def _globalRateLimit(self): try: RateLimit.Limit(self.ID) except RateLimitExceededException: raise ServiceException("Global rate limit reached", user_exception=UserException(UserExceptionType.RateLimited))

import warnings from pathlib import Path import matplotlib.pyplot as plt import pytest import pandas as pd from plotnine import (ggplot, aes, geom_text, geom_point, facet_wrap, ggsave, theme_xkcd) from plotnine.data import mtcars from plotnine.exceptions import PlotnineError, PlotnineWarning p = (ggplot(mtcars, aes(x='wt', y='mpg', label='name')) + geom_text()) def sequential_filenames(): """ Generate filenames for the tests """ for i in range(100): yield Path(f'filename-{i}.png') filename_gen = sequential_filenames() def assert_exist_and_clean(filename, msg=None): if not msg: msg = f"File {filename} does not exist" assert filename.exists(), msg filename.unlink() class TestArguments: def test_default_filename(self): p.save(verbose=False) fn = p._save_filename('pdf') assert_exist_and_clean(fn, "default filename") def test_save_method(self): fn = next(filename_gen) with pytest.warns(PlotnineWarning) as record: p.save(fn) assert_exist_and_clean(fn, "save method") res = ('saving' in str(item.message).lower() for item in record) assert any(res) res = ('filename' in str(item.message).lower() for item in record) assert any(res) # verbose fn = next(filename_gen) with warnings.catch_warnings(record=True) as record: p.save(fn, verbose=False) assert_exist_and_clean(fn, "save method") assert not record, "Issued an unexpected warning" def test_filename_plot_path(self): fn = next(filename_gen) p.save(fn, path='.', verbose=False) assert_exist_and_clean(fn, "fn, plot and path") def test_format_png(self): p.save(format='png', verbose=False) fn = p._save_filename('png') assert_exist_and_clean(fn, "format png") def test_dpi(self): fn = next(filename_gen) p.save(fn, dpi=100, verbose=False) assert_exist_and_clean(fn, "dpi = 100") def test_ggsave(self): ggsave(p, verbose=False) fn = p._save_filename('pdf') assert_exist_and_clean(fn, "default filename") def test_save_big(self): fn = next(filename_gen) # supplying the ggplot object will work without # printing it first! 26 is the current limit, just go # over it to not use too much memory p.save(fn, width=26, height=26, limitsize=False, verbose=False) assert_exist_and_clean(fn, "big height and width") def test_dpi_theme_xkcd(self): fn1 = next(filename_gen) fn2 = next(filename_gen) df = pd.DataFrame({ 'x': range(4), 'y': range(4), 'b': list('aabb') }) p = ( ggplot(df) + geom_point(aes('x', 'y')) + facet_wrap('b') + theme_xkcd() ) p.save(fn1, verbose=False) assert_exist_and_clean(fn1, "Saving with theme_xkcd and dpi (1)") p.save(fn2, dpi=72, verbose=False) assert_exist_and_clean(fn2, "Saving with theme_xkcd and dpi (2)") class TestExceptions: def test_unknown_format(self): with pytest.raises(Exception): p.save(format='unknown', verbose=False) def test_width_only(self): with pytest.raises(PlotnineError): p.save(width=11) def test_height_only(self): with pytest.raises(PlotnineError): p.save(height=8) def test_large_width(self): with pytest.raises(PlotnineError): p.save(width=300, height=8) def test_large_height(self): with pytest.raises(PlotnineError): p.save(widhth=11, height=300) def test_bad_units(self): with pytest.raises(Exception): p.save(width=1, heigth=1, units='xxx') # This should be the last function in the file since it can catch # "leakages" due to the tests in this test module. def test_ggsave_closes_plot(): assert plt.get_fignums() == [], "There are unsaved test plots" fn = next(filename_gen) p.save(fn, verbose=False) assert_exist_and_clean(fn, "exist") assert plt.get_fignums() == [], "ggplot.save did not close the plot"

import json from base64 import b64encode from beanstalk_dispatch import ARGS from beanstalk_dispatch import FUNCTION from beanstalk_dispatch import KWARGS from beanstalk_dispatch.common import create_request_body from django.core.urlresolvers import reverse from django.test import Client from django.test import TestCase from django.test import override_settings # Don't log logger errors. import logging logging.disable(logging.CRITICAL) CALL_COUNTER = 0 def counter_incrementer(first_arg, second_arg=None): global CALL_COUNTER CALL_COUNTER += first_arg if second_arg: CALL_COUNTER += second_arg DISPATCH_SETTINGS = { 'BEANSTALK_DISPATCH_TABLE': { 'the_counter': ( 'beanstalk_dispatch.tests.test_dispatcher', 'counter_incrementer')}} class DispatcherTestCase(TestCase): """ Test the server-side function dispatcher. In these tests, we base64-encode every message we send to the server because this is what boto does. """ def setUp(self): global CALL_COUNTER CALL_COUNTER = 0 self.client = Client() self.url = reverse('beanstalk_dispatcher') @override_settings(**DISPATCH_SETTINGS) def test_no_get(self): response = self.client.get(self.url) self.assertEquals(response.status_code, 405) @override_settings(BEANSTALK_DISPATCH_TABLE=None) def test_no_dispatch(self): response = self.client.post( self.url, b64encode( create_request_body('some_func').encode('ascii')), content_type='application/json') self.assertEquals(response.status_code, 400) self.assertEquals(json.loads(response.content.decode()), {'message': 'No beanstalk dispatch table configured', 'error': 400}) @override_settings(**DISPATCH_SETTINGS) def test_missing_function(self): response = self.client.post( self.url, b64encode(create_request_body('nonexistent_func').encode('ascii')), content_type='application/json') self.assertEquals(response.status_code, 400) self.assertEquals( json.loads(response.content.decode()), {'message': 'Requested function not found: nonexistent_func', 'error': 400}) @override_settings(**DISPATCH_SETTINGS) def test_malformed_request(self): keys = {FUNCTION, ARGS, KWARGS} for missing_key in keys: request_body = {key: 'test' for key in keys - {missing_key}} response = self.client.post( self.url, b64encode(json.dumps(request_body).encode('ascii')), content_type='application/json') self.assertEquals(response.status_code, 400) self.assertEquals(json.loads(response.content.decode()), { 'message': 'Please provide a {} argument'.format(missing_key), 'error': 400}) @override_settings(**DISPATCH_SETTINGS) def test_both_args_kwargs(self): body = b64encode( create_request_body('the_counter', 1, second_arg=5) .encode('ascii')) response = self.client.post(self.url, body, content_type='application/json') self.assertEquals(response.status_code, 200) self.assertEquals(json.loads(response.content.decode()), {}) self.assertEquals(CALL_COUNTER, 6) @override_settings(**DISPATCH_SETTINGS) def test_just_args(self): body = b64encode(create_request_body('the_counter', 2).encode('ascii')) response = self.client.post(self.url, body, content_type='application/json') self.assertEquals(response.status_code, 200) self.assertEquals(json.loads(response.content.decode()), {}) self.assertEquals(CALL_COUNTER, 2)

import unittest import numpy import six import chainer from chainer import backend from chainer.backends import cuda from chainer import gradient_check from chainer import initializers from chainer import links from chainer import memory_layouts from chainer import testing from chainer.testing import attr from chainer.testing import condition from chainer.utils import type_check import chainerx _parameterize = testing.parameterize(*(testing.product_dict( testing.product({ 'test': [True, False], 'size': ['skip', 'explicit'], 'dtype': [numpy.float16, numpy.float32, numpy.float64, chainer.mixed16], }), testing.product({ 'ndim': [0, 1, 2, 3], }) + [ {'input_shape': (5, 4, 3, 2), 'axis': (0, 2, 3)}, {'input_shape': (5, 4), 'axis': 0}, {'input_shape': (5, 4, 3), 'axis': (0, 1)}, ] ))) _inject_backend_tests = testing.inject_backend_tests( None, # CPU tests [ {}, {'use_ideep': 'always'}, ] # GPU tests + testing.product({ 'use_cuda': [True], 'use_cudnn': ['never', 'always'], 'cuda_device': [0, 1], }) # ChainerX tests + [ {'use_chainerx': True, 'chainerx_device': 'native:0'}, {'use_chainerx': True, 'chainerx_device': 'cuda:0'}, {'use_chainerx': True, 'chainerx_device': 'cuda:1'}, ]) def _batch_normalization(expander, gamma, beta, x, mean, var, eps, test): mean = mean[expander] if test: std = numpy.sqrt(var[expander]) else: std = numpy.sqrt(var[expander] + eps) y_expect = gamma * (x - mean) / std + beta return y_expect class BatchNormalizationTestBase(object): param_names = ('gamma', 'beta') def setUp(self): if self.dtype == chainer.mixed16: self.highprec_dtype = numpy.float32 else: self.highprec_dtype = self.dtype if hasattr(self, 'axis') and hasattr(self, 'input_shape'): aggr_axes = self.axis if isinstance(aggr_axes, int): aggr_axes = aggr_axes, shape = self.input_shape param_shape = tuple( s for i, s in enumerate(shape) if i not in aggr_axes) expander = tuple( None if i in aggr_axes else slice(None) for i in range(len(shape))) elif hasattr(self, 'ndim'): aggr_axes = (0,) + tuple(six.moves.range(2, self.ndim + 2)) shape = (5, 3) + (2,) * self.ndim param_shape = shape[1] expander = (None, Ellipsis) + (None,) * self.ndim else: assert False self.aggr_axes = aggr_axes self.shape = shape self.param_shape = param_shape self.expander = expander self.finetune = False self.eps = 2e-5 if self.test: self.mean = numpy.random.uniform( -1, 1, param_shape).astype(self.highprec_dtype) self.var = numpy.random.uniform( 0.5, 1, param_shape).astype(self.highprec_dtype) else: self.mean = None self.var = None self.check_forward_options = {'atol': 1e-4, 'rtol': 1e-3} self.check_backward_options = {'atol': 1e-4, 'rtol': 1e-3} if self.dtype in (numpy.float16, chainer.mixed16): self.check_forward_options = {'atol': 1e-2, 'rtol': 1e-1} self.check_backward_options = {'atol': 5e-1, 'rtol': 1e-1} def before_test(self, test_name): if (self.dtype == chainer.mixed16 and self.backend_config.xp is chainerx): raise unittest.SkipTest( 'ChainerX does not yet support mixed-FP16 mode.') def generate_params(self): initial_gamma = numpy.random.uniform( -1, 1, self.param_shape).astype(self.highprec_dtype) initial_beta = numpy.random.uniform( -1, 1, self.param_shape).astype(self.highprec_dtype) return initial_gamma, initial_beta def create_link(self, initializers): initial_gamma, initial_beta = initializers size = self.param_shape if self.size == 'explicit' else None initial_avg_mean = None if self.mean is None else self.mean.copy() initial_avg_var = None if self.var is None else self.var.copy() link = links.BatchNormalization( size=size, axis=self.aggr_axes, eps=self.eps, dtype=self.dtype, initial_gamma=initial_gamma, initial_beta=initial_beta, initial_avg_mean=initial_avg_mean, initial_avg_var=initial_avg_var) return link def generate_inputs(self): x = numpy.random.uniform(-1, 1, self.shape).astype(self.dtype) return x, def forward(self, link, inputs, device): x, = inputs # The inputs might be of different dtype than what the link was # initialized with. In that case, persistent values must be manually # cast. This is needed when forward is called in order to compute # numerical gradients. if ((self.dtype == chainer.mixed16 and x.dtype != numpy.float16) or (self.dtype != chainer.mixed16 and link.avg_mean is not None and x.dtype != link.avg_mean.dtype)): link.avg_mean = link.avg_mean.astype(x.dtype) link.avg_var = link.avg_var.astype(x.dtype) with chainer.using_config('train', not self.test): y = link(x, finetune=self.finetune) return y, def forward_expected(self, link, inputs): gamma = link.gamma.array beta = link.beta.array x, = inputs if self.test: mean = self.mean[self.expander] var = self.var[self.expander] std = numpy.sqrt(var) else: mean = x.mean( axis=self.aggr_axes, dtype=self.highprec_dtype, keepdims=True) var = x.var( axis=self.aggr_axes, dtype=self.highprec_dtype, keepdims=True) std = numpy.sqrt(var + self.eps) y = gamma[self.expander] * (x - mean) / std + beta[self.expander] return y.astype(self.dtype), def check_forward_outputs(self, outputs, expected_outputs): super(BatchNormalizationTestBase, self).check_forward_outputs( outputs, expected_outputs) y, = outputs assert y.dtype == chainer.get_dtype(self.dtype) @_inject_backend_tests @_parameterize class BatchNormalizationTest(BatchNormalizationTestBase, testing.LinkTestCase): pass # TODO(hvy): Safely remove this test class when BackendConfig no longer # modifies the current device since those cases should be covered by the tests # above. @testing.inject_backend_tests( None, testing.product({ 'use_cuda': [True], 'use_cudnn': ['never', 'always'], 'cuda_device': [0], })) @_parameterize @attr.multi_gpu(2) class BatchNormalizationMultiGpuTest( BatchNormalizationTestBase, testing.LinkTestCase): skip_backward_test = True # TODO(hvy): Remove this relaxation. It is currently needed as the # inter-device copy in CuPy with non-contiguous arrays are broken. contiguous = 'C' def forward(self, link, inputs, device): x, = inputs device_1 = backend.GpuDevice.from_device_id(1) link.to_device(device_1) x.to_device(device_1) device_0 = backend.GpuDevice.from_device_id(0) with chainer.using_device(device_0): with chainer.using_config('train', not self.test): y = link(x, finetune=self.finetune) return y, @testing.parameterize(*(testing.product_dict( testing.product({ 'dtype': [numpy.float16, numpy.float32, numpy.float64], })))) @_inject_backend_tests class BatchNormalizationInitializersTest( BatchNormalizationTestBase, testing.LinkInitializersTestCase): test = False size = 'skip' ndim = 1 input_shape = (5, 4) axis = 0 def get_initializers(self): initial_gamma = [ initializers.Constant(2), 2, testing.InitializerArgument(None, 1)] initial_beta = [ initializers.Constant(2), 2, testing.InitializerArgument(None, 0)] return initial_gamma, initial_beta @testing.parameterize( {'nx': 10, 'ny': 10, 'eps': 2e-5}, {'nx': 10, 'ny': 10, 'eps': 1e-1}, # TODO(Kenta Oono) # Pass the case below (this test does not pass when nx != ny). # {'nx': 10, 'ny': 15} ) class TestPopulationStatistics(unittest.TestCase): def setUp(self): self.decay = 0.9 self.size = 3 self.link = links.BatchNormalization(self.size, self.decay, self.eps) self.x = numpy.random.uniform( -1, 1, (self.nx, self.size)).astype(numpy.float32) self.y = numpy.random.uniform( -1, 1, (self.ny, self.size)).astype(numpy.float32) def check_statistics(self, x, y): x = chainer.Variable(x) self.link(x, finetune=True) mean = self.x.mean(axis=0) testing.assert_allclose(mean, self.link.avg_mean) unbiased_var = self.x.var(axis=0) * self.nx / (self.nx - 1) testing.assert_allclose(unbiased_var, self.link.avg_var) y = chainer.Variable(y) with chainer.using_config('train', False): self.link(y, finetune=True) testing.assert_allclose(mean, self.link.avg_mean) testing.assert_allclose(unbiased_var, self.link.avg_var) def test_statistics_cpu(self): self.check_statistics(self.x, self.y) @attr.gpu def test_statistics_gpu(self): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() self.check_statistics(cuda.to_gpu(self.x), cuda.to_gpu(self.y)) @attr.cudnn def test_statistics_gpu_without_cudnn(self): with chainer.using_config('use_cudnn', 'never'): self.test_statistics_gpu() def check_statistics2(self, x, y): x = chainer.Variable(x) y = chainer.Variable(y) self.link(x, finetune=True) self.link(y, finetune=True) mean = (self.x.sum(axis=0) + self.y.sum(axis=0)) / (self.nx + self.ny) var = (self.x.var(axis=0) * self.nx + self.y.var(axis=0) * self.ny) / (self.nx + self.ny) # TODO(Kenta Oono) # Fix the estimate of the unbiased variance. # Unbiased variance should be (nx + ny) / (nx + ny - 1) times of # the variance. # But the multiplier is ny / (ny - 1) in current implementation # these two values are different when nx is not equal to ny. unbiased_var = var * self.ny / (self.ny - 1) testing.assert_allclose(mean, self.link.avg_mean) testing.assert_allclose(unbiased_var, self.link.avg_var) def test_statistics2_cpu(self): self.check_statistics2(self.x, self.y) @attr.gpu def test_statistics2_gpu(self): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() self.check_statistics2( cuda.to_gpu(self.x), cuda.to_gpu(self.y)) @attr.cudnn def test_statistics2_gpu_without_cudnn(self): with chainer.using_config('use_cudnn', 'never'): self.test_statistics2_gpu() # TODO(hvy): Rewrite this test using testing.LinkTestCase. @testing.parameterize(*testing.product({ 'test': [True, False], 'ndim': [0, 1, 2, 3], })) class BatchNormalizationTestWithoutGammaAndBeta(unittest.TestCase): def setUp(self): self.link = links.BatchNormalization( 3, use_gamma=False, use_beta=False) if self.test: mean = numpy.random.uniform(-1, 1, (3,)).astype(numpy.float32) self.link.avg_mean[...] = mean var = numpy.random.uniform(0.5, 1, (3,)).astype(numpy.float32) self.link.avg_var[...] = var self.link.cleargrads() shape = (7, 3) + (2,) * self.ndim self.x = numpy.random.uniform(-1, 1, shape).astype(numpy.float32) self.gy = numpy.random.uniform(-1, 1, shape).astype(numpy.float32) expander = (None, Ellipsis) + (None,) * self.ndim gamma = numpy.ones((3,), dtype=numpy.float32)[expander] beta = numpy.zeros((3,), dtype=numpy.float32)[expander] if self.test: mean = self.link.avg_mean var = self.link.avg_var else: aggr_axes = (0,) + tuple(six.moves.range(2, self.ndim + 2)) mean = self.x.mean(axis=aggr_axes) var = self.x.var(axis=aggr_axes) self.y_expected = _batch_normalization( expander, gamma, beta, self.x, mean, var, self.link.eps, self.test) def test_no_gamma_and_beta(self): assert self.link.gamma is None assert self.link.beta is None def check_forward(self, x_data): x = chainer.Variable(x_data) with chainer.using_config('train', not self.test): y = self.link(x) testing.assert_allclose(self.y_expected, y.data) def test_forward_cpu(self): self.check_forward(self.x) @attr.gpu def test_forward_gpu(self): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() x = cuda.to_gpu(self.x) self.check_forward(x) @attr.multi_gpu(2) def test_forward_gpu_multi(self): with cuda.get_device_from_id(0): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() x = cuda.to_gpu(self.x) with cuda.get_device_from_id(1): self.check_forward(x) @attr.cudnn def test_forward_gpu_without_cudnn(self): with chainer.using_config('use_cudnn', 'never'): self.test_forward_gpu() def check_backward(self, x_data, y_grad): gradient_check.check_backward(self.link, x_data, y_grad, eps=1e-2, rtol=1e-3, atol=1e-4) @condition.retry(3) def test_backward_cpu(self): self.check_backward(self.x, self.gy) @attr.gpu @condition.retry(3) def test_backward_gpu(self): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() x = cuda.to_gpu(self.x) gy = cuda.to_gpu(self.gy) self.check_backward(x, gy) @attr.cudnn def test_backward_gpu_without_cudnn(self): with chainer.using_config('use_cudnn', 'never'): self.test_backward_gpu() def _generate_uniform(low, high, shape, dtype=numpy.float32): return numpy.random.uniform(low, high, shape).astype(dtype) @testing.parameterize(*testing.product({ 'size': [3, (2, 3)], })) class TestInitialize(unittest.TestCase): def setUp(self): self.decay = 0.9 self.initial_gamma = _generate_uniform(-1, 1, self.size) self.initial_beta = _generate_uniform(-1, 1, self.size) self.initial_avg_mean = _generate_uniform(-1, 1, self.size) self.initial_avg_var = _generate_uniform(-1, 1, self.size) self.link = links.BatchNormalization( self.size, self.decay, initial_gamma=self.initial_gamma, initial_beta=self.initial_beta, initial_avg_mean=self.initial_avg_mean, initial_avg_var=self.initial_avg_var, ) @condition.retry(3) def test_initialize_cpu(self): testing.assert_allclose(self.initial_gamma, self.link.gamma.data) testing.assert_allclose(self.initial_beta, self.link.beta.data) testing.assert_allclose(self.initial_avg_mean, self.link.avg_mean) testing.assert_allclose(self.initial_avg_var, self.link.avg_var) @attr.gpu @condition.retry(3) def test_initialize_gpu(self): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() testing.assert_allclose(self.initial_gamma, self.link.gamma.data) testing.assert_allclose(self.initial_beta, self.link.beta.data) testing.assert_allclose(self.initial_avg_mean, self.link.avg_mean) testing.assert_allclose(self.initial_avg_var, self.link.avg_var) @testing.parameterize(*testing.product({ 'dtype': [numpy.float32, numpy.float16, chainer.mixed16], })) class TestDefaultInitializer(unittest.TestCase): def setUp(self): self.decay = 0.9 self.size = 3 with chainer.using_config('dtype', self.dtype): self.link = links.BatchNormalization(self.size, self.decay) dtype = numpy.float32 if self.dtype == chainer.mixed16 else self.dtype assert self.link.beta.dtype == dtype assert self.link.gamma.dtype == dtype assert self.link.avg_mean.dtype == dtype assert self.link.avg_var.dtype == dtype self.x = numpy.arange(6, dtype=self.dtype).reshape(2, 3) def check_initialize(self): testing.assert_allclose(numpy.ones(self.size), self.link.gamma.array) testing.assert_allclose(numpy.zeros(self.size), self.link.beta.array) testing.assert_allclose(0, self.link.avg_mean) testing.assert_allclose(1, self.link.avg_var) y = self.link(self.x) assert y.dtype == self.x.dtype def test_initialize_cpu(self): self.check_initialize() @attr.gpu def test_initialize_gpu(self): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() self.x = cuda.to_gpu(self.x) self.check_initialize() @testing.parameterize(*testing.product({ 'shape': [(2, 4), (2, 5, 3, 4)], })) class TestInvalidInput(unittest.TestCase): def setUp(self): self.link = links.BatchNormalization(3) def test_invalid_shape_cpu(self): with self.assertRaises(type_check.InvalidType): self.link(chainer.Variable(numpy.zeros(self.shape, dtype='f'))) @attr.gpu def test_invalid_shape_gpu(self): with testing.assert_warns(DeprecationWarning): self.link.to_gpu() with self.assertRaises(type_check.InvalidType): self.link(chainer.Variable(cuda.cupy.zeros(self.shape, dtype='f'))) class TestInvalidInitialize(unittest.TestCase): def test_invalid_type(self): with self.assertRaises(TypeError): self.link = links.BatchNormalization({}) class TestInvalidArgument(unittest.TestCase): def setUp(self): self.link = links.BatchNormalization(1) self.x = numpy.random.uniform(-1, 1, (3,)).astype('f') def test_test_argument(self): with self.assertRaises(ValueError): self.link(self.x, test=True) def test_positional_argument(self): # positional argument is prohibited from v2 with self.assertRaises(TypeError): self.link(self.x, True) def test_redundant_argument(self): with self.assertRaises(TypeError): self.link(self.x, unknown_argument=1) @testing.parameterize( {'shape': (5, 4, 3, 2), 'axis': (0, 2, 3)}, {'shape': (5, 4), 'axis': 0}, {'shape': (5, 4, 3), 'axis': (0, 1)}, ) class TestChannalSizeInference(unittest.TestCase): def setUp(self): self.x = numpy.random.randn(*self.shape).astype('f') axis = self.axis if isinstance(axis, int): axis = (axis,) self.expected_size = tuple( n for i, n in enumerate(self.shape) if i not in axis ) def test_no_inference(self): bn = links.BatchNormalization(self.expected_size) assert bn.avg_mean is not None assert bn.avg_var is not None def test_inference_cpu(self): bn = links.BatchNormalization(axis=self.axis) bn(self.x) assert bn.beta.shape == self.expected_size assert bn.gamma.shape == self.expected_size assert bn.avg_mean.shape == self.expected_size assert bn.avg_var.shape == self.expected_size @attr.gpu def test_inference_gpu(self): bn = links.BatchNormalization(axis=self.axis) with testing.assert_warns(DeprecationWarning): bn.to_gpu() bn(cuda.to_gpu(self.x)) assert isinstance(bn.beta.data, cuda.cupy.ndarray) assert isinstance(bn.gamma.data, cuda.cupy.ndarray) assert isinstance(bn.avg_mean, cuda.cupy.ndarray) assert isinstance(bn.avg_var, cuda.cupy.ndarray) assert bn.beta.shape == self.expected_size assert bn.gamma.shape == self.expected_size assert bn.avg_mean.shape == self.expected_size assert bn.avg_var.shape == self.expected_size def test_no_gamma(self): bn = links.BatchNormalization(axis=self.axis, use_gamma=False) assert bn.gamma is None bn(self.x) assert bn.gamma is None def test_no_beta(self): bn = links.BatchNormalization(axis=self.axis, use_beta=False) assert bn.beta is None bn(self.x) assert bn.beta is None class TestFailChannalSizeInference(unittest.TestCase): def test_fail_inference(self): with self.assertRaises(RuntimeError): links.BatchNormalization() @attr.multi_gpu(2) class TestLazyInitializationWithNonZeroCurrentCudaDevice(unittest.TestCase): def test_lazy_initialization_with_non_zero_current_cuda_device(self): # Create a lazily initialized BatchNormalization link. bn = links.BatchNormalization(axis=(0, 2, 3)) assert bn.xp is numpy device = backend.GpuDevice.from_device_id(1) bn.to_device(device) assert bn.xp is cuda.cupy assert bn.device == device assert bn.beta.device == device assert bn.gamma.device == device assert bn.avg_mean is None assert bn.avg_var is None x = numpy.random.randn(5, 4, 3, 2).astype(numpy.float32) x = device.send(x) # All parameters and persistent values should correctly be initialized # on device 1, and not device 0, meaning forward pass should not raise # any errors. bn(x) assert bn.xp is cuda.cupy assert bn.device == device assert bn.beta.device == device assert bn.gamma.device == device assert bn.avg_mean is not None assert bn.avg_var is not None assert backend.GpuDevice.from_array(bn.avg_mean) == device assert backend.GpuDevice.from_array(bn.avg_var) == device @testing.parameterize(*testing.product({ 'x_shape,bn_kwargs': [ ((4, 3), {'axis': (0,)}), ((4, 3), {'size': (3,)}), ], })) class TestSerialize(unittest.TestCase): def create_link(self): return links.BatchNormalization(**self.bn_kwargs) def train_link(self, bn): x = numpy.random.rand(*self.x_shape).astype(numpy.float32) bn(x) x = numpy.random.rand(*self.x_shape).astype(numpy.float32) bn(x, finetune=True) # has non-trivial values to be stored assert bn.avg_mean is not None assert bn.N == 1 def create_serializer_pair(self): target = {} return ( chainer.serializers.DictionarySerializer(target), chainer.serializers.NpzDeserializer(target), ) def test_serialize(self): ser, de = self.create_serializer_pair() link1 = self.create_link() self.train_link(link1) link1.serialize(ser) link2 = self.create_link() link2.serialize(de) testing.assert_allclose(link2.avg_mean, link1.avg_mean) testing.assert_allclose(link2.avg_var, link1.avg_var) testing.assert_allclose(link2.beta.array, link1.beta.array) testing.assert_allclose(link2.gamma.array, link1.gamma.array) assert link2.N == link1.N @testing.inject_backend_tests( [ 'test_param_layout_to_device', 'test_forward', ], # CPU tests [{}] # GPU tests + testing.product({ 'use_cuda': [True], 'use_cudnn': ['never', 'always'], })) class TestBatchNormalizationMemoryLayouts(unittest.TestCase): batch = 2 channels = 3 height = 13 width = 11 axis = None dtype = numpy.float32 def create_link(self): channel_dims = (self.channels,) link = links.BatchNormalization( channel_dims, axis=self.axis) return link def create_input_array(self, xp): x_shape = (self.batch, self.height, self.width, self.channels) x = xp.ones(x_shape, self.dtype) return x def test_param_layout(self): with chainer.using_config('compute_mode', 'cudnn_fast'): link = self.create_link() assert link.gamma.layout is None assert link.beta.layout is None def test_param_layout_to_device(self, backend_config): with chainer.using_config('compute_mode', 'cudnn_fast'): link = self.create_link() assert link.gamma.device == chainer.get_device('@numpy') assert link.beta.device == chainer.get_device('@numpy') link.to_device(backend_config.device) assert link.gamma.device == backend_config.device assert link.beta.device == backend_config.device assert link.gamma.layout is None assert link.beta.layout is None def test_forward(self, backend_config): with chainer.using_config('compute_mode', 'cudnn_fast'): link = self.create_link() link.to_device(backend_config.device) x = self.create_input_array(backend_config.xp) x = chainer.Variable(x, layout=memory_layouts.CUDNN_CHANNEL_LAST_X) x.to_device(backend_config.device) with backend_config: y = link(x) assert link.gamma.device == backend_config.device assert link.beta.device == backend_config.device assert y.layout == memory_layouts.CUDNN_CHANNEL_LAST_X assert y.shape == ( self.batch, self.channels, self.height, self.width) testing.run_module(__name__, __file__)

import mock import pytest from future.moves.urllib.parse import quote from django.utils import timezone from django.core.exceptions import MultipleObjectsReturned from osf.models import Guid, NodeLicenseRecord, OSFUser from osf_tests.factories import AuthUserFactory, UserFactory, NodeFactory, NodeLicenseRecordFactory, \ RegistrationFactory, PreprintFactory, PreprintProviderFactory from osf.utils.permissions import ADMIN from tests.base import OsfTestCase from tests.test_websitefiles import TestFile from website.settings import MFR_SERVER_URL, WATERBUTLER_URL @pytest.mark.django_db class TestGuid: def test_long_id_gets_generated_on_creation(self): obj = NodeLicenseRecordFactory() assert obj._id assert len(obj._id) > 5 def test_loading_by_object_id(self): obj = NodeLicenseRecordFactory() assert NodeLicenseRecord.load(obj._id) == obj def test_loading_by_short_guid(self): obj = UserFactory() assert OSFUser.load(obj._id) == obj @pytest.mark.parametrize('Factory', [ UserFactory, NodeFactory, RegistrationFactory, ]) def test_short_guid_gets_generated_on_creation(self, Factory): obj = Factory() assert obj._id assert len(obj._id) == 5 @pytest.mark.django_db class TestReferent: @pytest.mark.parametrize('Factory', [ UserFactory, NodeFactory ]) def test_referent(self, Factory): obj = Factory() guid = Guid.objects.get(_id=obj._id) assert guid.referent == obj @pytest.mark.parametrize('Factory', [ UserFactory, NodeFactory ]) def test_referent_can_be_set(self, Factory): obj = Factory() obj1 = Factory() guid = Guid.load(obj._id) assert guid.referent == obj # sanity check guid.referent = obj1 assert guid.referent == obj1 @pytest.mark.skip('I don\'t actually think we do this anywhere') def test_swapping_guids(self): user = UserFactory() node = NodeFactory() user_guid = user.guids[0] node_guid = node.guids[0] user._id = node_guid._id node._id = user_guid._id assert node_guid._id == user._id assert user_guid._id == node._id def test_id_matches(self): user = UserFactory() guid = Guid.objects.get(_id=user._id) assert user._id == guid._id @pytest.mark.skip('I don\'t actually think we do this anywhere') @pytest.mark.parametrize('Factory', [ UserFactory, NodeFactory ]) def test_nulling_out_guid(self, Factory): obj = Factory() guid = Guid.load(obj._id) obj.guid = None obj.save() obj.refresh_from_db() # queryset cache returns the old version guid.refresh_from_db() assert obj.guid != guid assert guid.guid != obj.guid.guid @pytest.mark.parametrize('Factory', [ UserFactory, NodeFactory, ]) def test_querying_with_multiple_guids(self, Factory): obj = Factory() guids = [obj.guids.first()] for i in range(0, 16): guids.append(Guid.objects.create(referent=obj)) try: Factory._meta.model.objects.get(id=obj.id) except MultipleObjectsReturned as ex: pytest.fail('Multiple objects returned for {} with multiple guids. {}'.format(Factory._meta.model, ex)) @pytest.mark.enable_bookmark_creation class TestResolveGuid(OsfTestCase): def setUp(self): super(TestResolveGuid, self).setUp() self.node = NodeFactory() def test_resolve_guid(self): res_guid = self.app.get(self.node.web_url_for('node_setting', _guid=True), auth=self.node.creator.auth) res_full = self.app.get(self.node.web_url_for('node_setting'), auth=self.node.creator.auth) assert res_guid.text == res_full.text def test_resolve_guid_no_referent(self): guid = Guid.load(self.node._id) guid.referent = None guid.save() res = self.app.get( self.node.web_url_for('node_setting', _guid=True), auth=self.node.creator.auth, expect_errors=True, ) assert res.status_code == 404 @mock.patch('osf.models.node.Node.deep_url', None) def test_resolve_guid_no_url(self): res = self.app.get( self.node.web_url_for('node_setting', _guid=True), auth=self.node.creator.auth, expect_errors=True, ) assert res.status_code == 404 def test_resolve_guid_no_auth_redirect_to_cas_includes_public(self): """ Unauthenticated users are sent to login when visiting private projects, but not if the projects are public. """ res = self.app.get( self.node.web_url_for('resolve_guid', guid=self.node._id), expect_errors=True, ) assert res.status_code == 302 assert '/login?service=' in res.location self.node.is_public = True self.node.save() res = self.app.get( self.node.web_url_for('resolve_guid', guid=self.node._id), expect_errors=True, ) assert res.status_code == 200 def test_resolve_guid_no_auth_redirect_to_cas_includes_public_with_url_segments(self): """ Unauthenticated users are sent to login when visiting private projects related URLs, but not if the projects are public """ for segment in ('comments', 'links', 'components', 'files', 'files/osfstorage', 'files/addon'): self.node.is_public = False self.node.save() res = self.app.get( f'{self.node.web_url_for("resolve_guid", guid=self.node._id)}/{segment}/', expect_errors=True, ) assert res.status_code == 302 assert '/login?service=' in res.location self.node.is_public = True self.node.save() res = self.app.get( f'{self.node.web_url_for("resolve_guid", guid=self.node._id)}/{segment}/', expect_errors=True, ) assert res.status_code == 200 def test_resolve_guid_private_request_access_or_redirect_to_cas(self): """ Authenticated users are sent to the request access page when it is set to true on the node, otherwise they get a legacy Forbidden page. """ non_contrib = AuthUserFactory() self.node.access_requests_enabled = False self.node.save() res = self.app.get( self.node.web_url_for('resolve_guid', guid=self.node._id), auth=non_contrib.auth, expect_errors=True, ) assert '<title>OSF | Forbidden</title>' in res.body.decode() assert res.status_code == 403 self.node.access_requests_enabled = True self.node.save() res = self.app.get( self.node.web_url_for('resolve_guid', guid=self.node._id), auth=non_contrib.auth, expect_errors=True, ) assert res.status_code == 403 assert '<title>OSF | Request Access</title>' in res.body.decode() def test_resolve_guid_download_file(self): pp = PreprintFactory(finish=True) res = self.app.get(pp.url + 'download') assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get(pp.url + 'download/') assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get('/{}/download'.format(pp.primary_file.get_guid(create=True)._id)) assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location pp.primary_file.create_version( creator=pp.creator, location={u'folder': u'osf', u'object': u'deadbe', u'service': u'cloud'}, metadata={u'contentType': u'img/png', u'size': 9001} ) pp.primary_file.save() res = self.app.get(pp.url + 'download/') assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=2'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get(pp.url + 'download/?version=1') assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?version=1&action=download&direct'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location unpub_pp = PreprintFactory(project=self.node, is_published=False) res = self.app.get(unpub_pp.url + 'download/?version=1', auth=unpub_pp.creator.auth) assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?version=1&action=download&direct'.format(WATERBUTLER_URL, unpub_pp._id, unpub_pp.primary_file.provider, unpub_pp.primary_file.path) in res.location @mock.patch('website.settings.USE_EXTERNAL_EMBER', True) @mock.patch('website.settings.EXTERNAL_EMBER_APPS', { 'preprints': { 'server': 'http://localhost:4200', 'path': '/preprints/' }, }) def test_resolve_guid_download_file_from_emberapp_preprints(self): provider = PreprintProviderFactory(_id='sockarxiv', name='Sockarxiv') pp = PreprintFactory(finish=True, provider=provider) assert pp.url.startswith('/preprints/sockarxiv') res = self.app.get(pp.url + 'download') assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get(pp.url + 'download/') assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location @mock.patch('website.settings.USE_EXTERNAL_EMBER', True) @mock.patch('website.settings.EXTERNAL_EMBER_APPS', { 'preprints': { 'server': 'http://localhost:4200', 'path': '/preprints/' }, }) def test_resolve_guid_download_file_from_emberapp_preprints_unpublished(self): # non-branded domains provider = PreprintProviderFactory(_id='sockarxiv', name='Sockarxiv', reviews_workflow='pre-moderation') # branded domains branded_provider = PreprintProviderFactory(_id='spot', name='Spotarxiv', reviews_workflow='pre-moderation') branded_provider.allow_submissions = False branded_provider.domain = 'https://www.spotarxiv.com' branded_provider.description = 'spots not dots' branded_provider.domain_redirect_enabled = True branded_provider.share_publish_type = 'Thesis' branded_provider.save() # test_provider_submitter_can_download_unpublished submitter = AuthUserFactory() pp = PreprintFactory(finish=True, provider=provider, is_published=False, creator=submitter) pp.run_submit(submitter) pp_branded = PreprintFactory(finish=True, provider=branded_provider, is_published=False, filename='preprint_file_two.txt', creator=submitter) pp_branded.run_submit(submitter) res = self.app.get('{}download'.format(pp.url), auth=submitter.auth) assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get('{}download'.format(pp_branded.url), auth=submitter.auth) assert res.status_code == 302 # test_provider_super_user_can_download_unpublished super_user = AuthUserFactory() super_user.is_superuser = True super_user.save() res = self.app.get('{}download'.format(pp.url), auth=super_user.auth) assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get('{}download'.format(pp_branded.url), auth=super_user.auth) assert res.status_code == 302 # test_provider_moderator_can_download_unpublished moderator = AuthUserFactory() provider.add_to_group(moderator, 'moderator') provider.save() res = self.app.get('{}download'.format(pp.url), auth=moderator.auth) assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location branded_provider.add_to_group(moderator, 'moderator') branded_provider.save() res = self.app.get('{}download'.format(pp_branded.url), auth=moderator.auth) assert res.status_code == 302 # test_provider_admin_can_download_unpublished admin = AuthUserFactory() provider.add_to_group(admin, ADMIN) provider.save() res = self.app.get('{}download'.format(pp.url), auth=admin.auth) assert res.status_code == 302 assert '{}/v1/resources/{}/providers/{}{}?action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location branded_provider.add_to_group(admin, ADMIN) branded_provider.save() res = self.app.get('{}download'.format(pp_branded.url), auth=admin.auth) assert res.status_code == 302 def test_resolve_guid_download_file_export(self): pp = PreprintFactory(finish=True) res = self.app.get(pp.url + 'download?format=asdf') assert res.status_code == 302 assert '{}/export?format=asdf&url='.format(MFR_SERVER_URL) in res.location assert '{}/v1/resources/{}/providers/{}{}%3Fformat%3Dasdf%26action%3Ddownload%26direct%26version%3D1'.format(quote(WATERBUTLER_URL), pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get(pp.url + 'download/?format=asdf') assert res.status_code == 302 assert '{}/export?format=asdf&url='.format(MFR_SERVER_URL) in res.location assert '{}/v1/resources/{}/providers/{}{}%3Fformat%3Dasdf%26action%3Ddownload%26direct%26version%3D1'.format(quote(WATERBUTLER_URL), pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get('/{}/download?format=asdf'.format(pp.primary_file.get_guid(create=True)._id)) assert res.status_code == 302 assert '{}/export?format=asdf&url='.format(MFR_SERVER_URL) in res.location assert '{}/v1/resources/{}/providers/{}{}%3Fformat%3Dasdf%26action%3Ddownload%26direct%26version%3D1'.format(quote(WATERBUTLER_URL), pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location res = self.app.get('/{}/download/?format=asdf'.format(pp.primary_file.get_guid(create=True)._id)) assert res.status_code == 302 assert '{}/export?format=asdf&url='.format(MFR_SERVER_URL) in res.location assert '{}/v1/resources/{}/providers/{}{}%3Fformat%3Dasdf%26action%3Ddownload%26direct%26version%3D1'.format(quote(WATERBUTLER_URL), pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location pp.primary_file.create_version( creator=pp.creator, location={u'folder': u'osf', u'object': u'deadbe', u'service': u'cloud'}, metadata={u'contentType': u'img/png', u'size': 9001} ) pp.primary_file.save() res = self.app.get(pp.url + 'download/?format=asdf') assert res.status_code == 302 assert '{}/export?format=asdf&url='.format(MFR_SERVER_URL) in res.location assert '{}/v1/resources/{}/providers/{}{}%3F'.format(quote(WATERBUTLER_URL), pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location quarams = res.location.split('%3F')[1].split('%26') assert 'action%3Ddownload' in quarams assert 'version%3D2' in quarams assert 'direct' in quarams res = self.app.get(pp.url + 'download/?format=asdf&version=1') assert res.status_code == 302 assert '{}/export?format=asdf&url='.format(MFR_SERVER_URL) in res.location assert '{}/v1/resources/{}/providers/{}{}%3F'.format(quote(WATERBUTLER_URL), pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location quarams = res.location.split('%3F')[1].split('%26') assert 'action%3Ddownload' in quarams assert 'version%3D1' in quarams assert 'direct' in quarams unpub_pp = PreprintFactory(project=self.node, is_published=False) res = self.app.get(unpub_pp.url + 'download?format=asdf', auth=unpub_pp.creator.auth) assert res.status_code == 302 assert res.status_code == 302 assert '{}/export?format=asdf&url='.format(MFR_SERVER_URL) in res.location assert '{}/v1/resources/{}/providers/{}{}%3F'.format(quote(WATERBUTLER_URL), unpub_pp._id, unpub_pp.primary_file.provider, unpub_pp.primary_file.path) in res.location quarams = res.location.split('%3F')[1].split('%26') assert 'action%3Ddownload' in quarams assert 'version%3D1' in quarams assert 'direct' in quarams def test_resolve_guid_download_file_export_same_format_optimization(self): pp = PreprintFactory(filename='test.pdf', finish=True) res = self.app.get(pp.url + 'download/?format=pdf') assert res.status_code == 302 assert '{}/export?'.format(MFR_SERVER_URL) not in res.location assert '{}/v1/resources/{}/providers/{}{}?format=pdf&action=download&direct&version=1'.format(WATERBUTLER_URL, pp._id, pp.primary_file.provider, pp.primary_file.path) in res.location def test_resolve_guid_download_errors(self): testfile = TestFile.get_or_create(self.node, 'folder/path') testfile.name = 'asdf' testfile.materialized_path = '/folder/path' guid = testfile.get_guid(create=True) testfile.save() testfile.delete() res = self.app.get('/{}/download'.format(guid), expect_errors=True) assert res.status_code == 404 pp = PreprintFactory(is_published=False) res = self.app.get(pp.url + 'download', expect_errors=True) assert res.status_code == 404 pp.is_published = True pp.save() pp.is_public = False pp.save() non_contrib = AuthUserFactory() res = self.app.get(pp.url + 'download', auth=non_contrib.auth, expect_errors=True) assert res.status_code == 403 pp.deleted = timezone.now() pp.save() res = self.app.get(pp.url + 'download', auth=non_contrib.auth, expect_errors=True) assert res.status_code == 410

import os PROJECT_ROOT = os.path.abspath(os.path.dirname(os.path.dirname(__file__))) print PROJECT_ROOT DEBUG = True TEMPLATE_DEBUG = DEBUG ADMINS = ( # ('Your Name', 'your_email@example.com'), ) MANAGERS = ADMINS DATABASES = { 'default': { 'ENGINE': 'django.db.backends.sqlite3', # Add 'postgresql_psycopg2', 'mysql', 'sqlite3' or 'oracle'. 'NAME': 'dev.db', # Or path to database file if using sqlite3. # The following settings are not used with sqlite3: 'USER': '', 'PASSWORD': '', 'HOST': '', # Empty for localhost through domain sockets or '127.0.0.1' for localhost through TCP. 'PORT': '', # Set to empty string for default. } } # Hosts/domain names that are valid for this site; required if DEBUG is False # See https://docs.djangoproject.com/en/1.5/ref/settings/#allowed-hosts ALLOWED_HOSTS = [] # Local time zone for this installation. Choices can be found here: # http://en.wikipedia.org/wiki/List_of_tz_zones_by_name # although not all choices may be available on all operating systems. # In a Windows environment this must be set to your system time zone. TIME_ZONE = 'America/Chicago' # Language code for this installation. All choices can be found here: # http://www.i18nguy.com/unicode/language-identifiers.html LANGUAGE_CODE = 'en-us' SITE_ID = 1 # If you set this to False, Django will make some optimizations so as not # to load the internationalization machinery. USE_I18N = True # If you set this to False, Django will not format dates, numbers and # calendars according to the current locale. USE_L10N = True # If you set this to False, Django will not use timezone-aware datetimes. USE_TZ = True # Absolute filesystem path to the directory that will hold user-uploaded files. # Example: "/var/www/example.com/media/" MEDIA_ROOT = '' # URL that handles the media served from MEDIA_ROOT. Make sure to use a # trailing slash. # Examples: "http://example.com/media/", "http://media.example.com/" MEDIA_URL = '/media/' # Absolute path to the directory static files should be collected to. # Don't put anything in this directory yourself; store your static files # in apps' "static/" subdirectories and in STATICFILES_DIRS. # Example: "/var/www/example.com/static/" STATIC_ROOT = '' # URL prefix for static files. # Example: "http://example.com/static/", "http://static.example.com/" STATIC_URL = '/static/' # Additional locations of static files STATICFILES_DIRS = ( # Put strings here, like "/home/html/static" or "C:/www/django/static". # Always use forward slashes, even on Windows. # Don't forget to use absolute paths, not relative paths. os.path.join(PROJECT_ROOT, 'static'), ) # List of finder classes that know how to find static files in # various locations. STATICFILES_FINDERS = ( 'django.contrib.staticfiles.finders.FileSystemFinder', 'django.contrib.staticfiles.finders.AppDirectoriesFinder', # 'django.contrib.staticfiles.finders.DefaultStorageFinder', ) # Make this unique, and don't share it with anybody. SECRET_KEY = '*g104nbk9h8t3%5pjj(jz8b0pxm_7_2y**m++3=uow5zmwbcbh' # List of callables that know how to import templates from various sources. TEMPLATE_LOADERS = ( 'django.template.loaders.filesystem.Loader', 'django.template.loaders.app_directories.Loader', # 'django.template.loaders.eggs.Loader', ) MIDDLEWARE_CLASSES = ( 'django.middleware.common.CommonMiddleware', 'django.contrib.sessions.middleware.SessionMiddleware', 'django.middleware.csrf.CsrfViewMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', 'django.contrib.messages.middleware.MessageMiddleware', # Uncomment the next line for simple clickjacking protection: # 'django.middleware.clickjacking.XFrameOptionsMiddleware', ) ROOT_URLCONF = 'website.urls' # Python dotted path to the WSGI application used by Django's runserver. WSGI_APPLICATION = 'website.wsgi.application' TEMPLATE_DIRS = ( # Put strings here, like "/home/html/django_templates" or "C:/www/django/templates". # Always use forward slashes, even on Windows. # Don't forget to use absolute paths, not relative paths. os.path.join(PROJECT_ROOT, 'templates'), ) INSTALLED_APPS = ( 'django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'django.contrib.messages', 'django.contrib.staticfiles', 'django.contrib.admin', # Uncomment the next line to enable admin documentation: # 'django.contrib.admindocs', 'crispy_forms', 'south', 'rest_framework', 'posts', 'profiles', 'relationships', ) SESSION_SERIALIZER = 'django.contrib.sessions.serializers.JSONSerializer' # A sample logging configuration. The only tangible logging # performed by this configuration is to send an email to # the site admins on every HTTP 500 error when DEBUG=False. # See http://docs.djangoproject.com/en/dev/topics/logging for # more details on how to customize your logging configuration. LOGGING = { 'version': 1, 'disable_existing_loggers': False, 'filters': { 'require_debug_false': { '()': 'django.utils.log.RequireDebugFalse' } }, 'handlers': { 'mail_admins': { 'level': 'ERROR', 'filters': ['require_debug_false'], 'class': 'django.utils.log.AdminEmailHandler' } }, 'loggers': { 'django.request': { 'handlers': ['mail_admins'], 'level': 'ERROR', 'propagate': True, }, } } # Extra Settings. AUTH_LOGIN_URL = '/login/' AUTH_USER_MODEL = 'profiles.SiteUser' CRISPY_TEMPLATE_PACK = 'bootstrap3' REST_FRAMEWORK = { 'DEFAULT_PERMISSION_CLASSES': ( 'rest_framework.permissions.IsAuthenticated', ) }

"""Test class for Fake driver.""" import mock from ironic.common import boot_devices from ironic.common import driver_factory from ironic.common import exception from ironic.common import states from ironic.conductor import task_manager from ironic.drivers import base as driver_base from ironic.tests.unit.conductor import mgr_utils from ironic.tests.unit.db import base as db_base from ironic.tests.unit.objects import utils as obj_utils class FakeDriverTestCase(db_base.DbTestCase): def setUp(self): super(FakeDriverTestCase, self).setUp() mgr_utils.mock_the_extension_manager() self.driver = driver_factory.get_driver("fake") self.node = obj_utils.get_test_node(self.context) self.task = mock.MagicMock(spec=task_manager.TaskManager) self.task.shared = False self.task.node = self.node self.task.driver = self.driver def test_driver_interfaces(self): self.assertIsInstance(self.driver.power, driver_base.PowerInterface) self.assertIsInstance(self.driver.deploy, driver_base.DeployInterface) self.assertIsInstance(self.driver.boot, driver_base.BootInterface) self.assertIsInstance(self.driver.vendor, driver_base.VendorInterface) self.assertIsInstance(self.driver.console, driver_base.ConsoleInterface) self.assertIsNone(self.driver.rescue) def test_get_properties(self): expected = ['A1', 'A2', 'B1', 'B2'] properties = self.driver.get_properties() self.assertEqual(sorted(expected), sorted(properties.keys())) def test_power_interface(self): self.assertEqual({}, self.driver.power.get_properties()) self.driver.power.validate(self.task) self.driver.power.get_power_state(self.task) self.assertRaises(exception.InvalidParameterValue, self.driver.power.set_power_state, self.task, states.NOSTATE) self.driver.power.set_power_state(self.task, states.POWER_ON) self.driver.power.reboot(self.task) def test_deploy_interface(self): self.assertEqual({}, self.driver.deploy.get_properties()) self.driver.deploy.validate(None) self.driver.deploy.prepare(None) self.driver.deploy.deploy(None) self.driver.deploy.take_over(None) self.driver.deploy.clean_up(None) self.driver.deploy.tear_down(None) def test_boot_interface(self): self.assertEqual({}, self.driver.boot.get_properties()) self.driver.boot.validate(self.task) self.driver.boot.prepare_ramdisk(self.task, {}) self.driver.boot.clean_up_ramdisk(self.task) self.driver.boot.prepare_instance(self.task) self.driver.boot.clean_up_instance(self.task) def test_console_interface(self): self.assertEqual({}, self.driver.console.get_properties()) self.driver.console.validate(self.task) self.driver.console.start_console(self.task) self.driver.console.stop_console(self.task) self.driver.console.get_console(self.task) def test_management_interface_get_properties(self): self.assertEqual({}, self.driver.management.get_properties()) def test_management_interface_validate(self): self.driver.management.validate(self.task) def test_management_interface_set_boot_device_good(self): self.driver.management.set_boot_device(self.task, boot_devices.PXE) def test_management_interface_set_boot_device_fail(self): self.assertRaises(exception.InvalidParameterValue, self.driver.management.set_boot_device, self.task, 'not-supported') def test_management_interface_get_supported_boot_devices(self): expected = [boot_devices.PXE] self.assertEqual( expected, self.driver.management.get_supported_boot_devices(self.task)) def test_management_interface_get_boot_device(self): expected = {'boot_device': boot_devices.PXE, 'persistent': False} self.assertEqual(expected, self.driver.management.get_boot_device(self.task)) def test_inspect_interface(self): self.assertEqual({}, self.driver.inspect.get_properties()) self.driver.inspect.validate(self.task) self.driver.inspect.inspect_hardware(self.task)

import os import sys from utdirect.utils import setup_extra # If you use an 'extra' folder with svn externals, uncomment the following lines: #CURRENT_DIR = os.path.dirname(os.path.abspath(__file__)) #setup_extra(os.path.join(CURRENT_DIR, 'extra')) import settings if __name__ == "__main__": os.environ.setdefault("DJANGO_SETTINGS_MODULE", "settings") from django.core.management import execute_from_command_line try: #This should never be on the python path. sys.path.remove(os.path.dirname(os.path.abspath(__file__))) except: pass execute_from_command_line(sys.argv)

''' File: statistics.py Author: Oliver Zscheyge Description: Collection of statistics functions. ''' import math def mean(values, ndigits=None): """ Return: Mean of values, rounded to ndigits. """ n = len(values) if n == 0: raise ValueError(u"Can't compute mean over empty list!") su = math.fsum(values) if ndigits is not None: return round(su / float(n), ndigits) return su / float(n) def variance(values, ndigits=None): """ Args: values: List of at least 2 values. Return: Variance of a list of values, rounded to ndigits. """ n = len(values) if n < 2: raise ValueError(u"Can't compute variance over less than 2 values.") mean = math.fsum(values) / float(n) var = math.fsum([(v - mean) * (v - mean) for v in values]) if ndigits is not None: return round(var / float(n), ndigits) return var / float(n) def stdev(values, ndigits=None): """ Args: values: List of at least 2 values. Return: Standard deviation of a list of values, rounded to ndigits. """ n = len(values) if n < 2: raise ValueError(u"Can't compute standard deviation over less than 2 values.") mean = math.fsum(values) / float(n) var = math.fsum([(v - mean) * (v - mean) for v in values]) / float(n) if ndigits is not None: return round(math.sqrt(var), ndigits) return math.sqrt(var) def mean_stdev(values, ndigits=None): """ Args: values: List of at least 2 values. Return: (mean, standard deviation) tuple of a list of values, rounded to ndigits. """ n = len(values) if n < 2: raise ValueError(u"Can't compute variance/standard deviation over less than 2 values.") mean = math.fsum(values) / float(n) sd = math.sqrt(math.fsum([(v - mean) * (v - mean) for v in values]) / float(n)) if ndigits is not None: return (round(mean, ndigits), round(sd, ndigits)) return (mean, sd) if __name__ == '__main__': print u"Test for %s" % __file__ values = range(10) def assert_raises(fun, arg, msg): try: res = fun(arg) assert False, msg except ValueError: pass print u" Testing mean and variance..." m = mean(values) var = variance(values) assert m == 4.5 assert var == 8.25 assert_raises(mean, [], u"Mean of empty list did not fail properly!") assert_raises(variance, [], u"Variance of empty list did not fail properly!") assert_raises(variance, [42], u"Variance of 1 element list did not fail properly!") print u" Testing stdev and mean_stdev..." sv = stdev(values) (mean2, stdev2) = mean_stdev(values) assert sv == math.sqrt(var) assert m == mean2 assert sv == stdev2 assert_raises(stdev, [], u"Stdev of empty list did not fail!") assert_raises(stdev, [42], u"Stdev of 1 element list did not fail!") assert_raises(mean_stdev, [], u"Mean_stdev of empty list did not fail!") assert_raises(mean_stdev, [42], u"Mean_stdev of 1 element list did not fail!") print u" Testing mean_stdev rounding..." stats_rounded = mean_stdev(values, 2) assert stats_rounded == (4.5, 2.87) print u"Passed all tests!"

r"""Train Onsets and Frames piano transcription model.""" from __future__ import absolute_import from __future__ import division from __future__ import print_function import os from magenta.common import tf_utils from magenta.models.onsets_frames_transcription import constants from magenta.models.onsets_frames_transcription import model from magenta.models.onsets_frames_transcription import train_util import tensorflow as tf FLAGS = tf.app.flags.FLAGS tf.app.flags.DEFINE_string('master', '', 'Name of the TensorFlow runtime to use.') tf.app.flags.DEFINE_string( 'examples_path', None, 'Path to a TFRecord file of train/eval examples.') tf.app.flags.DEFINE_string( 'model_dir', '~/tmp/onsets_frames', 'Path where checkpoints and summary events will be located during ' 'training and evaluation. Separate subdirectories `train` and `eval` ' 'will be created within this directory.') tf.app.flags.DEFINE_integer('num_steps', 1000000, 'Number of training steps or `None` for infinite.') tf.app.flags.DEFINE_integer( 'keep_checkpoint_max', 100, 'Maximum number of checkpoints to keep in `train` mode or 0 for infinite.') tf.app.flags.DEFINE_string( 'hparams', '', 'A comma-separated list of `name=value` hyperparameter values.') tf.app.flags.DEFINE_string( 'log', 'INFO', 'The threshold for what messages will be logged: ' 'DEBUG, INFO, WARN, ERROR, or FATAL.') def run(hparams, model_dir): """Run train/eval/test.""" train_util.train( master=FLAGS.master, model_dir=model_dir, examples_path=FLAGS.examples_path, hparams=hparams, keep_checkpoint_max=FLAGS.keep_checkpoint_max, num_steps=FLAGS.num_steps) def main(unused_argv): tf.logging.set_verbosity(FLAGS.log) tf.app.flags.mark_flags_as_required(['examples_path']) model_dir = os.path.expanduser(FLAGS.model_dir) hparams = tf_utils.merge_hparams(constants.DEFAULT_HPARAMS, model.get_default_hparams()) # Command line flags override any of the preceding hyperparameter values. hparams.parse(FLAGS.hparams) run(hparams, model_dir) def console_entry_point(): tf.app.run(main) if __name__ == '__main__': console_entry_point()

import json import os import random import unittest import warnings from copy import deepcopy import numpy as np from scipy.misc import central_diff_weights from pymatgen.analysis.elasticity.elastic import ( ComplianceTensor, ElasticTensor, ElasticTensorExpansion, NthOrderElasticTensor, diff_fit, find_eq_stress, generate_pseudo, get_diff_coeff, get_strain_state_dict, ) from pymatgen.analysis.elasticity.strain import Deformation, Strain from pymatgen.analysis.elasticity.stress import Stress from pymatgen.core.lattice import Lattice from pymatgen.core.structure import Structure from pymatgen.core.tensors import Tensor from pymatgen.core.units import FloatWithUnit from pymatgen.util.testing import PymatgenTest class ElasticTensorTest(PymatgenTest): def setUp(self): self.voigt_1 = [ [59.33, 28.08, 28.08, 0, 0, 0], [28.08, 59.31, 28.07, 0, 0, 0], [28.08, 28.07, 59.32, 0, 0, 0], [0, 0, 0, 26.35, 0, 0], [0, 0, 0, 0, 26.35, 0], [0, 0, 0, 0, 0, 26.35], ] mat = np.random.randn(6, 6) mat = mat + np.transpose(mat) self.rand_elastic_tensor = ElasticTensor.from_voigt(mat) self.ft = np.array( [ [ [[59.33, 0, 0], [0, 28.08, 0], [0, 0, 28.08]], [[0, 26.35, 0], [26.35, 0, 0], [0, 0, 0]], [[0, 0, 26.35], [0, 0, 0], [26.35, 0, 0]], ], [ [[0, 26.35, 0], [26.35, 0, 0], [0, 0, 0]], [[28.08, 0, 0], [0, 59.31, 0], [0, 0, 28.07]], [[0, 0, 0], [0, 0, 26.35], [0, 26.35, 0]], ], [ [[0, 0, 26.35], [0, 0, 0], [26.35, 0, 0]], [[0, 0, 0], [0, 0, 26.35], [0, 26.35, 0]], [[28.08, 0, 0], [0, 28.07, 0], [0, 0, 59.32]], ], ] ) self.elastic_tensor_1 = ElasticTensor(self.ft) filepath = os.path.join(PymatgenTest.TEST_FILES_DIR, "Sn_def_stress.json") with open(filepath) as f: self.def_stress_dict = json.load(f) with open(os.path.join(PymatgenTest.TEST_FILES_DIR, "test_toec_data.json")) as f: self.toec_dict = json.load(f) self.structure = self.get_structure("Sn") warnings.simplefilter("always") def test_properties(self): # compliance tensor ct = ComplianceTensor.from_voigt(np.linalg.inv(self.elastic_tensor_1.voigt)) self.assertArrayAlmostEqual(ct, self.elastic_tensor_1.compliance_tensor) # KG average properties self.assertAlmostEqual(38.49111111111, self.elastic_tensor_1.k_voigt) self.assertAlmostEqual(22.05866666666, self.elastic_tensor_1.g_voigt) self.assertAlmostEqual(38.49110945133, self.elastic_tensor_1.k_reuss) self.assertAlmostEqual(20.67146635306, self.elastic_tensor_1.g_reuss) self.assertAlmostEqual(38.49111028122, self.elastic_tensor_1.k_vrh) self.assertAlmostEqual(21.36506650986, self.elastic_tensor_1.g_vrh) # universal anisotropy self.assertAlmostEqual(0.33553509658699, self.elastic_tensor_1.universal_anisotropy) # homogeneous poisson self.assertAlmostEqual(0.26579965576472, self.elastic_tensor_1.homogeneous_poisson) # voigt notation tensor self.assertArrayAlmostEqual(self.elastic_tensor_1.voigt, self.voigt_1) # young's modulus self.assertAlmostEqual(54087787667.160583, self.elastic_tensor_1.y_mod) # prop dict prop_dict = self.elastic_tensor_1.property_dict self.assertAlmostEqual(prop_dict["homogeneous_poisson"], 0.26579965576) for k, v in prop_dict.items(): self.assertAlmostEqual(getattr(self.elastic_tensor_1, k), v) def test_directional_elastic_mod(self): self.assertAlmostEqual( self.elastic_tensor_1.directional_elastic_mod([1, 0, 0]), self.elastic_tensor_1.voigt[0, 0], ) self.assertAlmostEqual(self.elastic_tensor_1.directional_elastic_mod([1, 1, 1]), 73.624444444) def test_compliance_tensor(self): stress = self.elastic_tensor_1.calculate_stress([0.01] + [0] * 5) comp = self.elastic_tensor_1.compliance_tensor strain = Strain(comp.einsum_sequence([stress])) self.assertArrayAlmostEqual(strain.voigt, [0.01] + [0] * 5) def test_directional_poisson_ratio(self): v_12 = self.elastic_tensor_1.directional_poisson_ratio([1, 0, 0], [0, 1, 0]) self.assertAlmostEqual(v_12, 0.321, places=3) def test_structure_based_methods(self): # trans_velocity self.assertAlmostEqual(1996.35019877, self.elastic_tensor_1.trans_v(self.structure)) # long_velocity self.assertAlmostEqual(3534.68123832, self.elastic_tensor_1.long_v(self.structure)) # Snyder properties self.assertAlmostEqual(18.06127074, self.elastic_tensor_1.snyder_ac(self.structure)) self.assertAlmostEqual(0.18937465, self.elastic_tensor_1.snyder_opt(self.structure)) self.assertAlmostEqual(18.25064540, self.elastic_tensor_1.snyder_total(self.structure)) # Clarke self.assertAlmostEqual(0.3450307, self.elastic_tensor_1.clarke_thermalcond(self.structure)) # Cahill self.assertAlmostEqual(0.37896275, self.elastic_tensor_1.cahill_thermalcond(self.structure)) # Debye self.assertAlmostEqual(198.8037985019, self.elastic_tensor_1.debye_temperature(self.structure)) # structure-property dict sprop_dict = self.elastic_tensor_1.get_structure_property_dict(self.structure) self.assertAlmostEqual(sprop_dict["long_v"], 3534.68123832) for val in sprop_dict.values(): self.assertFalse(isinstance(val, FloatWithUnit)) for k, v in sprop_dict.items(): if k == "structure": self.assertEqual(v, self.structure) else: f = getattr(self.elastic_tensor_1, k) if callable(f): self.assertAlmostEqual(getattr(self.elastic_tensor_1, k)(self.structure), v) else: self.assertAlmostEqual(getattr(self.elastic_tensor_1, k), v) # Test other sprop dict modes sprop_dict = self.elastic_tensor_1.get_structure_property_dict(self.structure, include_base_props=False) self.assertFalse("k_vrh" in sprop_dict) # Test ValueError being raised for structure properties test_et = deepcopy(self.elastic_tensor_1) test_et[0][0][0][0] = -100000 prop_dict = test_et.property_dict for attr_name in sprop_dict: if attr_name not in (list(prop_dict.keys()) + ["structure"]): self.assertRaises(ValueError, getattr(test_et, attr_name), self.structure) self.assertRaises(ValueError, test_et.get_structure_property_dict, self.structure) noval_sprop_dict = test_et.get_structure_property_dict(self.structure, ignore_errors=True) self.assertIsNone(noval_sprop_dict["snyder_ac"]) def test_new(self): self.assertArrayAlmostEqual(self.elastic_tensor_1, ElasticTensor(self.ft)) nonsymm = self.ft nonsymm[0, 1, 2, 2] += 1.0 with warnings.catch_warnings(record=True) as w: ElasticTensor(nonsymm) self.assertEqual(len(w), 1) badtensor1 = np.zeros((3, 3, 3)) badtensor2 = np.zeros((3, 3, 3, 2)) self.assertRaises(ValueError, ElasticTensor, badtensor1) self.assertRaises(ValueError, ElasticTensor, badtensor2) def test_from_pseudoinverse(self): strain_list = [Strain.from_deformation(def_matrix) for def_matrix in self.def_stress_dict["deformations"]] stress_list = [stress for stress in self.def_stress_dict["stresses"]] with warnings.catch_warnings(record=True): et_fl = -0.1 * ElasticTensor.from_pseudoinverse(strain_list, stress_list).voigt self.assertArrayAlmostEqual( et_fl.round(2), [ [59.29, 24.36, 22.46, 0, 0, 0], [28.06, 56.91, 22.46, 0, 0, 0], [28.06, 25.98, 54.67, 0, 0, 0], [0, 0, 0, 26.35, 0, 0], [0, 0, 0, 0, 26.35, 0], [0, 0, 0, 0, 0, 26.35], ], ) def test_from_independent_strains(self): strains = self.toec_dict["strains"] stresses = self.toec_dict["stresses"] with warnings.catch_warnings(record=True): et = ElasticTensor.from_independent_strains(strains, stresses) self.assertArrayAlmostEqual(et.voigt, self.toec_dict["C2_raw"], decimal=-1) def test_energy_density(self): film_elac = ElasticTensor.from_voigt( [ [324.32, 187.3, 170.92, 0.0, 0.0, 0.0], [187.3, 324.32, 170.92, 0.0, 0.0, 0.0], [170.92, 170.92, 408.41, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 150.73, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 150.73, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 238.74], ] ) dfm = Deformation( [ [-9.86004855e-01, 2.27539582e-01, -4.64426035e-17], [-2.47802121e-01, -9.91208483e-01, -7.58675185e-17], [-6.12323400e-17, -6.12323400e-17, 1.00000000e00], ] ) self.assertAlmostEqual(film_elac.energy_density(dfm.green_lagrange_strain), 0.00125664672793) film_elac.energy_density( Strain.from_deformation( [ [0.99774738, 0.11520994, -0.0], [-0.11520994, 0.99774738, 0.0], [ -0.0, -0.0, 1.0, ], ] ) ) class ElasticTensorExpansionTest(PymatgenTest): def setUp(self): with open(os.path.join(PymatgenTest.TEST_FILES_DIR, "test_toec_data.json")) as f: self.data_dict = json.load(f) self.strains = [Strain(sm) for sm in self.data_dict["strains"]] self.pk_stresses = [Stress(d) for d in self.data_dict["pk_stresses"]] self.c2 = self.data_dict["C2_raw"] self.c3 = self.data_dict["C3_raw"] self.exp = ElasticTensorExpansion.from_voigt([self.c2, self.c3]) self.cu = Structure.from_spacegroup("Fm-3m", Lattice.cubic(3.623), ["Cu"], [[0] * 3]) indices = [(0, 0), (0, 1), (3, 3)] values = [167.8, 113.5, 74.5] cu_c2 = ElasticTensor.from_values_indices(values, indices, structure=self.cu, populate=True) indices = [(0, 0, 0), (0, 0, 1), (0, 1, 2), (0, 3, 3), (0, 5, 5), (3, 4, 5)] values = [-1507.0, -965.0, -71.0, -7.0, -901.0, 45.0] cu_c3 = Tensor.from_values_indices(values, indices, structure=self.cu, populate=True) self.exp_cu = ElasticTensorExpansion([cu_c2, cu_c3]) cu_c4 = Tensor.from_voigt(self.data_dict["Cu_fourth_order"]) self.exp_cu_4 = ElasticTensorExpansion([cu_c2, cu_c3, cu_c4]) warnings.simplefilter("ignore") def tearDown(self): warnings.simplefilter("default") def test_init(self): cijkl = Tensor.from_voigt(self.c2) cijklmn = Tensor.from_voigt(self.c3) exp = ElasticTensorExpansion([cijkl, cijklmn]) ElasticTensorExpansion.from_voigt([self.c2, self.c3]) self.assertEqual(exp.order, 3) def test_from_diff_fit(self): ElasticTensorExpansion.from_diff_fit(self.strains, self.pk_stresses) def test_calculate_stress(self): calc_stress = self.exp.calculate_stress(self.strains[0]) self.assertArrayAlmostEqual(self.pk_stresses[0], calc_stress, decimal=2) def test_energy_density(self): edensity = self.exp.energy_density(self.strains[0]) self.assertAlmostEqual(edensity, 1.36363099e-4) def test_gruneisen(self): # Get GGT ggt = self.exp_cu.get_ggt([1, 0, 0], [0, 1, 0]) self.assertArrayAlmostEqual(np.eye(3) * np.array([4.92080537, 4.2852349, -0.7147651]), ggt) # Get TGT tgt = self.exp_cu.get_tgt() self.assertArrayAlmostEqual(tgt, np.eye(3) * 2.59631832) # Get heat capacity c0 = self.exp_cu.get_heat_capacity(0, self.cu, [1, 0, 0], [0, 1, 0]) self.assertEqual(c0, 0.0) c = self.exp_cu.get_heat_capacity(300, self.cu, [1, 0, 0], [0, 1, 0]) self.assertAlmostEqual(c, 8.285611958) # Get Gruneisen parameter gp = self.exp_cu.get_gruneisen_parameter() self.assertAlmostEqual(gp, 2.59631832) _ = self.exp_cu.get_gruneisen_parameter(temperature=200, structure=self.cu) def test_thermal_expansion_coeff(self): # TODO get rid of duplicates alpha_dp = self.exp_cu.thermal_expansion_coeff(self.cu, 300, mode="dulong-petit") alpha_dp_ground_truth = 6.3471959e-07 * np.ones((3, 3)) alpha_dp_ground_truth[np.diag_indices(3)] = 2.2875769e-7 self.assertArrayAlmostEqual(alpha_dp_ground_truth, alpha_dp, decimal=4) alpha_debye = self.exp_cu.thermal_expansion_coeff(self.cu, 300, mode="debye") alpha_comp = 5.9435148e-7 * np.ones((3, 3)) alpha_comp[np.diag_indices(3)] = 21.4533472e-06 self.assertArrayAlmostEqual(alpha_comp, alpha_debye) def test_get_compliance_expansion(self): ce_exp = self.exp_cu.get_compliance_expansion() et_comp = ElasticTensorExpansion(ce_exp) strain_orig = Strain.from_voigt([0.01, 0, 0, 0, 0, 0]) stress = self.exp_cu.calculate_stress(strain_orig) strain_revert = et_comp.calculate_stress(stress) self.assertArrayAlmostEqual(strain_orig, strain_revert, decimal=4) def test_get_effective_ecs(self): # Ensure zero strain is same as SOEC test_zero = self.exp_cu.get_effective_ecs(np.zeros((3, 3))) self.assertArrayAlmostEqual(test_zero, self.exp_cu[0]) s = np.zeros((3, 3)) s[0, 0] = 0.02 test_2percent = self.exp_cu.get_effective_ecs(s) diff = test_2percent - test_zero self.assertArrayAlmostEqual(self.exp_cu[1].einsum_sequence([s]), diff) def test_get_strain_from_stress(self): strain = Strain.from_voigt([0.05, 0, 0, 0, 0, 0]) stress3 = self.exp_cu.calculate_stress(strain) strain_revert3 = self.exp_cu.get_strain_from_stress(stress3) self.assertArrayAlmostEqual(strain, strain_revert3, decimal=2) # fourth order stress4 = self.exp_cu_4.calculate_stress(strain) strain_revert4 = self.exp_cu_4.get_strain_from_stress(stress4) self.assertArrayAlmostEqual(strain, strain_revert4, decimal=2) def test_get_yield_stress(self): self.exp_cu_4.get_yield_stress([1, 0, 0]) class NthOrderElasticTensorTest(PymatgenTest): def setUp(self): with open(os.path.join(PymatgenTest.TEST_FILES_DIR, "test_toec_data.json")) as f: self.data_dict = json.load(f) self.strains = [Strain(sm) for sm in self.data_dict["strains"]] self.pk_stresses = [Stress(d) for d in self.data_dict["pk_stresses"]] self.c2 = NthOrderElasticTensor.from_voigt(self.data_dict["C2_raw"]) self.c3 = NthOrderElasticTensor.from_voigt(self.data_dict["C3_raw"]) def test_init(self): c2 = NthOrderElasticTensor(self.c2.tolist()) c3 = NthOrderElasticTensor(self.c3.tolist()) c4 = NthOrderElasticTensor(np.zeros([3] * 8)) for n, c in enumerate([c2, c3, c4]): self.assertEqual(c.order, n + 2) self.assertRaises(ValueError, NthOrderElasticTensor, np.zeros([3] * 5)) def test_from_diff_fit(self): c3 = NthOrderElasticTensor.from_diff_fit( self.strains, self.pk_stresses, eq_stress=self.data_dict["eq_stress"], order=3, ) self.assertArrayAlmostEqual(c3.voigt, self.data_dict["C3_raw"], decimal=2) def test_calculate_stress(self): calc_stress = self.c2.calculate_stress(self.strains[0]) self.assertArrayAlmostEqual(self.pk_stresses[0], calc_stress, decimal=0) # Test calculation from voigt strain self.c2.calculate_stress(self.strains[0].voigt) def test_energy_density(self): self.c3.energy_density(self.strains[0]) class DiffFitTest(PymatgenTest): """ Tests various functions related to diff fitting """ def setUp(self): with open(os.path.join(PymatgenTest.TEST_FILES_DIR, "test_toec_data.json")) as f: self.data_dict = json.load(f) self.strains = [Strain(sm) for sm in self.data_dict["strains"]] self.pk_stresses = [Stress(d) for d in self.data_dict["pk_stresses"]] def test_get_strain_state_dict(self): strain_inds = [(0,), (1,), (2,), (1, 3), (1, 2, 3)] vecs = {} strain_states = [] for strain_ind in strain_inds: ss = np.zeros(6) np.put(ss, strain_ind, 1) strain_states.append(tuple(ss)) vec = np.zeros((4, 6)) rand_values = np.random.uniform(0.1, 1, 4) for i in strain_ind: vec[:, i] = rand_values vecs[strain_ind] = vec all_strains = [Strain.from_voigt(v).zeroed() for vec in vecs.values() for v in vec] random.shuffle(all_strains) all_stresses = [Stress.from_voigt(np.random.random(6)).zeroed() for s in all_strains] strain_dict = {k.tostring(): v for k, v in zip(all_strains, all_stresses)} ss_dict = get_strain_state_dict(all_strains, all_stresses, add_eq=False) # Check length of ss_dict self.assertEqual(len(strain_inds), len(ss_dict)) # Check sets of strain states are correct self.assertEqual(set(strain_states), set(ss_dict.keys())) for strain_state, data in ss_dict.items(): # Check correspondence of strains/stresses for strain, stress in zip(data["strains"], data["stresses"]): self.assertArrayAlmostEqual( Stress.from_voigt(stress), strain_dict[Strain.from_voigt(strain).tostring()], ) # Add test to ensure zero strain state doesn't cause issue strains, stresses = [Strain.from_voigt([-0.01] + [0] * 5)], [Stress(np.eye(3))] ss_dict = get_strain_state_dict(strains, stresses) self.assertArrayAlmostEqual(list(ss_dict.keys()), [[1, 0, 0, 0, 0, 0]]) def test_find_eq_stress(self): test_strains = deepcopy(self.strains) test_stresses = deepcopy(self.pk_stresses) with warnings.catch_warnings(record=True): no_eq = find_eq_stress(test_strains, test_stresses) self.assertArrayAlmostEqual(no_eq, np.zeros((3, 3))) test_strains[3] = Strain.from_voigt(np.zeros(6)) eq_stress = find_eq_stress(test_strains, test_stresses) self.assertArrayAlmostEqual(test_stresses[3], eq_stress) def test_get_diff_coeff(self): forward_11 = get_diff_coeff([0, 1], 1) forward_13 = get_diff_coeff([0, 1, 2, 3], 1) backward_26 = get_diff_coeff(np.arange(-6, 1), 2) central_29 = get_diff_coeff(np.arange(-4, 5), 2) self.assertArrayAlmostEqual(forward_11, [-1, 1]) self.assertArrayAlmostEqual(forward_13, [-11.0 / 6, 3, -3.0 / 2, 1.0 / 3]) self.assertArrayAlmostEqual( backward_26, [ 137.0 / 180, -27.0 / 5, 33.0 / 2, -254.0 / 9, 117.0 / 4, -87.0 / 5, 203.0 / 45, ], ) self.assertArrayAlmostEqual(central_29, central_diff_weights(9, 2)) def test_generate_pseudo(self): strain_states = np.eye(6).tolist() m2, abs = generate_pseudo(strain_states, order=2) m3, abs = generate_pseudo(strain_states, order=3) m4, abs = generate_pseudo(strain_states, order=4) def test_fit(self): diff_fit(self.strains, self.pk_stresses, self.data_dict["eq_stress"]) reduced = [(e, pk) for e, pk in zip(self.strains, self.pk_stresses) if not (abs(abs(e) - 0.05) < 1e-10).any()] # Get reduced dataset r_strains, r_pk_stresses = zip(*reduced) with warnings.catch_warnings(record=True): c2 = diff_fit(r_strains, r_pk_stresses, self.data_dict["eq_stress"], order=2) c2, c3, c4 = diff_fit(r_strains, r_pk_stresses, self.data_dict["eq_stress"], order=4) c2, c3 = diff_fit(self.strains, self.pk_stresses, self.data_dict["eq_stress"], order=3) c2_red, c3_red = diff_fit(r_strains, r_pk_stresses, self.data_dict["eq_stress"], order=3) self.assertArrayAlmostEqual(c2.voigt, self.data_dict["C2_raw"]) self.assertArrayAlmostEqual(c3.voigt, self.data_dict["C3_raw"], decimal=5) self.assertArrayAlmostEqual(c2, c2_red, decimal=0) self.assertArrayAlmostEqual(c3, c3_red, decimal=-1) if __name__ == "__main__": unittest.main()

import re import six from cassandra.util import OrderedDict from cassandra.cqlengine import CQLEngineException from cassandra.cqlengine import columns from cassandra.cqlengine import connection from cassandra.cqlengine import models class UserTypeException(CQLEngineException): pass class UserTypeDefinitionException(UserTypeException): pass class BaseUserType(object): """ The base type class; don't inherit from this, inherit from UserType, defined below """ __type_name__ = None _fields = None _db_map = None def __init__(self, **values): self._values = {} for name, field in self._fields.items(): value = values.get(name, None) if value is not None or isinstance(field, columns.BaseContainerColumn): value = field.to_python(value) value_mngr = field.value_manager(self, field, value) if name in values: value_mngr.explicit = True self._values[name] = value_mngr def __eq__(self, other): if self.__class__ != other.__class__: return False keys = set(self._fields.keys()) other_keys = set(other._fields.keys()) if keys != other_keys: return False for key in other_keys: if getattr(self, key, None) != getattr(other, key, None): return False return True def __ne__(self, other): return not self.__eq__(other) def __str__(self): return "{{{0}}}".format(', '.join("'{0}': {1}".format(k, getattr(self, k)) for k, v in six.iteritems(self._values))) def has_changed_fields(self): return any(v.changed for v in self._values.values()) def reset_changed_fields(self): for v in self._values.values(): v.reset_previous_value() def __iter__(self): for field in self._fields.keys(): yield field def __getitem__(self, key): if not isinstance(key, six.string_types): raise TypeError if key not in self._fields.keys(): raise KeyError return getattr(self, key) def __setitem__(self, key, val): if not isinstance(key, six.string_types): raise TypeError if key not in self._fields.keys(): raise KeyError return setattr(self, key, val) def __len__(self): try: return self._len except: self._len = len(self._columns.keys()) return self._len def keys(self): """ Returns a list of column IDs. """ return [k for k in self] def values(self): """ Returns list of column values. """ return [self[k] for k in self] def items(self): """ Returns a list of column ID/value tuples. """ return [(k, self[k]) for k in self] @classmethod def register_for_keyspace(cls, keyspace): connection.register_udt(keyspace, cls.type_name(), cls) @classmethod def type_name(cls): """ Returns the type name if it's been defined otherwise, it creates it from the class name """ if cls.__type_name__: type_name = cls.__type_name__.lower() else: camelcase = re.compile(r'([a-z])([A-Z])') ccase = lambda s: camelcase.sub(lambda v: '{0}_{1}'.format(v.group(1), v.group(2)), s) type_name = ccase(cls.__name__) # trim to less than 48 characters or cassandra will complain type_name = type_name[-48:] type_name = type_name.lower() type_name = re.sub(r'^_+', '', type_name) cls.__type_name__ = type_name return type_name def validate(self): """ Cleans and validates the field values """ pass for name, field in self._fields.items(): v = getattr(self, name) if v is None and not self._values[name].explicit and field.has_default: v = field.get_default() val = field.validate(v) setattr(self, name, val) class UserTypeMetaClass(type): def __new__(cls, name, bases, attrs): field_dict = OrderedDict() field_defs = [(k, v) for k, v in attrs.items() if isinstance(v, columns.Column)] field_defs = sorted(field_defs, key=lambda x: x[1].position) def _transform_column(field_name, field_obj): field_dict[field_name] = field_obj field_obj.set_column_name(field_name) attrs[field_name] = models.ColumnDescriptor(field_obj) # transform field definitions for k, v in field_defs: # don't allow a field with the same name as a built-in attribute or method if k in BaseUserType.__dict__: raise UserTypeDefinitionException("field '{0}' conflicts with built-in attribute/method".format(k)) _transform_column(k, v) # create db_name -> model name map for loading db_map = {} for field_name, field in field_dict.items(): db_map[field.db_field_name] = field_name attrs['_fields'] = field_dict attrs['_db_map'] = db_map klass = super(UserTypeMetaClass, cls).__new__(cls, name, bases, attrs) return klass @six.add_metaclass(UserTypeMetaClass) class UserType(BaseUserType): """ This class is used to model User Defined Types. To define a type, declare a class inheriting from this, and assign field types as class attributes: .. code-block:: python # connect with default keyspace ... from cassandra.cqlengine.columns import Text, Integer from cassandra.cqlengine.usertype import UserType class address(UserType): street = Text() zipcode = Integer() from cassandra.cqlengine import management management.sync_type(address) Please see :ref:`user_types` for a complete example and discussion. """ __type_name__ = None """ *Optional.* Sets the name of the CQL type for this type. If not specified, the type name will be the name of the class, with it's module name as it's prefix. """

from rest_framework import viewsets from rest_framework import pagination from django_filters.rest_framework import DjangoFilterBackend from .models import SkosConcept, SkosConceptScheme, SkosLabel, SkosNamespace from .serializers import ( SkosLabelSerializer, SkosNamespaceSerializer, SkosConceptSchemeSerializer, SkosConceptSerializer ) from .filters import SkosConceptFilter from .api_renderers import RDFRenderer from rest_framework.settings import api_settings class LargeResultsSetPagination(pagination.PageNumberPagination): page_size = 25 page_size_query_param = 'page_size' max_page_size = 10000 class SkosLabelViewSet(viewsets.ModelViewSet): queryset = SkosLabel.objects.all() serializer_class = SkosLabelSerializer class SkosNamespaceViewSet(viewsets.ModelViewSet): queryset = SkosNamespace.objects.all() serializer_class = SkosNamespaceSerializer class SkosConceptSchemeViewSet(viewsets.ModelViewSet): queryset = SkosConceptScheme.objects.all() serializer_class = SkosConceptSchemeSerializer class SkosConceptViewSet(viewsets.ModelViewSet): queryset = SkosConcept.objects.all() serializer_class = SkosConceptSerializer filter_backends = (DjangoFilterBackend,) filter_class = SkosConceptFilter pagination_class = LargeResultsSetPagination renderer_classes = tuple(api_settings.DEFAULT_RENDERER_CLASSES) + (RDFRenderer,)

from ..helpers.search_helpers import get_filters_from_request def sections_for_lot(lot, builder): if lot is None or lot == 'all': sections = builder.filter( {'lot': 'iaas'}).filter( {'lot': 'paas'}).filter( {'lot': 'saas'}).filter( {'lot': 'scs'}).sections else: sections = builder.filter({'lot': lot}).sections return sections def filters_for_lot(lot, builder): sections = sections_for_lot(lot, builder) lot_filters = [] for section in sections: section_filter = { "label": section["name"], "filters": [], } for question in section["questions"]: section_filter["filters"].extend( filters_for_question(question) ) lot_filters.append(section_filter) return lot_filters def filters_for_question(question): question_filters = [] if question['type'] == 'boolean': question_filters.append({ 'label': question['question'], 'name': question['id'], 'id': question['id'], 'value': 'true', }) elif question['type'] in ['checkboxes', 'radios']: for option in question['options']: question_filters.append({ 'label': option['label'], 'name': question['id'], 'id': '{}-{}'.format( question['id'], option['label'].lower().replace(' ', '-')), 'value': option['label'].lower(), }) return question_filters def set_filter_states(filter_groups, request): """Sets a flag on each filter to mark it as set or not""" request_filters = get_filters_from_request(request) for filter_group in filter_groups: for filter in filter_group['filters']: filter['checked'] = False param_values = request_filters.getlist( filter['name'], type=str ) if len(param_values) > 0: filter['checked'] = ( filter['value'] in param_values )

try: from collections import OrderedDict except ImportError: from ordereddict import OrderedDict from mse.constants import * from mse.charset import fix_charset_collation class EqualityMixin: def __eq__(self, other): return (type(other) is type(self)) and self.__dict__ == other.__dict__ def __ne__(self, other): return not self.__eq__(other) class Table(EqualityMixin): def __init__(self, name, engine=None, charset=None, collation=None): self.name = name self.columns = OrderedDict() self.indexes = OrderedDict() self.engine = engine self.charset, self.collation = fix_charset_collation(charset, collation) def add_or_update_column(self, column): assert isinstance(column, Column) self.columns[column.name] = column def add_or_update_index(self, index): assert isinstance(index, Index) for index_column in index.columns: if not self.columns.get(index_column.name): raise ValueError( "unable to create index [{0}], column [{1}] does not exists in table" .format(index, index_column.name)) self.indexes[index.name] = index class IndexColumn(EqualityMixin): def __init__(self, name, length=0, direction=DIRECTION_ASC): self.name = name self.length = length self.direction = direction def __repr__(self): return self.__str__() def __str__(self): base = self.name if self.length > 0: base += "({0})".format(self.length) if self.direction == DIRECTION_DESC: base += " {0}".format(DIRECTION_DESC) return base class Index(EqualityMixin): def __init__(self, name, columns, is_primary=False, is_unique=False): name = name.strip() assert name assert isinstance(columns, list) assert len(columns) >= 1 self.name = name self.columns = [] for col in columns: if isinstance(col, IndexColumn): self.columns.append(col) elif isinstance(col, str): self.columns.append(IndexColumn(col)) else: raise ValueError("unknown index column {0}".format(col)) self.is_primary = is_primary # Overwrite is_unique when it's primary self.is_unique = is_primary or is_unique def __repr__(self): return self.__str__() def __str__(self): col_str = [str(x) for x in self.columns] cols = ", ".join(col_str) if self.is_primary: return "PRIMARY KEY ({0})".format(cols) elif self.is_unique: return "UNIQUE KEY {0} ({1})".format(self.name, cols) else: return "KEY {0} ({1})".format(self.name, cols) class Column(EqualityMixin): def __init__(self, name, data_type, length=0, decimal=None, nullable=True, charset=None, collation=None): name = name.strip() data_type = data_type.strip().upper() assert name assert data_type in STRING_TYPES or data_type in NUMERIC_TYPES or data_type in DATE_TYPES self.name = name self.data_type = data_type self.length = length self.decimal = decimal self.nullable = nullable self.charset, self.collation = fix_charset_collation(charset, collation) def __repr__(self): return self.__str__() def __str__(self): nn = "" if self.nullable else "NOT NULL" if self.decimal is not None: return "{0} {1}({2},{3}) {4}".format(self.name, self.data_type, self.length, self.decimal, nn).strip() elif self.data_type in DATE_TYPES or self.data_type in NUMERIC_TYPES: return "{0} {1} {2}".format(self.name, self.data_type, nn).strip() elif self.data_type in STRING_TYPES: cs = "CHARACTER SET {0} COLLATION {1}".format(self.charset, self.collation) if self.charset else "" return "{0} {1}({2}) {3} {4}".format(self.name, self.data_type, self.length, cs, nn).strip()

import json import httpretty import pytest import pypuppetdb def stub_request(url, data=None, method=httpretty.GET, status=200, **kwargs): if data is None: body = '[]' else: with open(data, 'r') as d: body = json.load(d.read()) return httpretty.register_uri(method, url, body=body, status=status, **kwargs) @pytest.fixture(params=['string', 'QueryBuilder']) def query(request): key = 'certname' value = 'node1' if request.param == 'string': return '["{0}", "=", "{1}"]'.format(key, value) elif request.param == 'QueryBuilder': return pypuppetdb.QueryBuilder.EqualsOperator(key, value) class TestQueryAPI(object): def test_facts(self, api): facts_body = [{ 'certname': 'test_certname', 'name': 'test_name', 'value': 'test_value', 'environment': 'test_environment', }] facts_url = 'http://localhost:8080/pdb/query/v4/facts' httpretty.enable() httpretty.register_uri(httpretty.GET, facts_url, body=json.dumps(facts_body)) for fact in api.facts(): pass assert httpretty.last_request().path == '/pdb/query/v4/facts' httpretty.disable() httpretty.reset() def test_fact_names(self, api): httpretty.enable() stub_request('http://localhost:8080/pdb/query/v4/fact-names') api.fact_names() assert httpretty.last_request().path == '/pdb/query/v4/fact-names' httpretty.disable() httpretty.reset() def test_normalize_resource_type(self, api): assert api._normalize_resource_type('sysctl::value') == \ 'Sysctl::Value' assert api._normalize_resource_type('user') == 'User' def test_environments(self, api): httpretty.enable() stub_request('http://localhost:8080/pdb/query/v4/environments') api.environments() assert httpretty.last_request().path == '/pdb/query/v4/environments' httpretty.disable() httpretty.reset() def test_inventory(self, api): inventory_body = [{ 'certname': 'test_certname', 'timestamp': '2017-06-05T20:18:23.374Z', 'environment': 'test_environment', 'facts': 'test_facts', 'trusted': 'test_trusted' }] inventory_url = 'http://localhost:8080/pdb/query/v4/inventory' httpretty.enable() httpretty.register_uri(httpretty.GET, inventory_url, body=json.dumps(inventory_body)) for inv in api.inventory(): pass assert httpretty.last_request().path == '/pdb/query/v4/inventory' httpretty.disable() httpretty.reset() def test_nodes_single(self, api): body = { "cached_catalog_status": "not_used", "catalog_environment": "production", "catalog_timestamp": "2016-08-15T11:06:26.275Z", "certname": "greenserver.vm", "deactivated": None, "expired": None, "facts_environment": "production", "facts_timestamp": "2016-08-15T11:06:26.140Z", "latest_report_hash": "4a956674b016d95a7b77c99513ba26e4a744f8d1", "latest_report_noop": False, "latest_report_noop_pending": None, "latest_report_status": "changed", "report_environment": "production", "report_timestamp": "2016-08-15T11:06:18.393Z" } url = 'http://localhost:8080/pdb/query/v4/nodes' httpretty.enable() httpretty.register_uri(httpretty.GET, url, body=json.dumps(body)) nodes = list(api.nodes(query='["=","certname","greenserver.vm"')) assert len(nodes) == 1 assert nodes[0].name == "greenserver.vm" assert httpretty.last_request().path.startswith('/pdb/query/v4/nodes') httpretty.disable() httpretty.reset()

from gnuradio import blocks from gnuradio import eng_notation from gnuradio import fft from gnuradio import gr from gnuradio import uhd from gnuradio.eng_option import eng_option from gnuradio.fft import window from gnuradio.filter import firdes from optparse import OptionParser import time class SALSA_eceiver(gr.top_block): def __init__(self): gr.top_block.__init__(self, "Salsa Eceiver") ################################################## # Variables ################################################## self.samp_rate = samp_rate = 5000000.0 self.outfile = outfile = "/tmp/vale.dat" self.int_time = int_time = 10 self.gain = gain = 60 self.fftsize = fftsize = 4096 self.c_freq = c_freq = 1420.4e6 ################################################## # Blocks ################################################## self.uhd_usrp_source_0 = uhd.usrp_source( device_addr="addr=192.168.10.2", stream_args=uhd.stream_args( cpu_format="fc32", channels=range(1), ), ) self.uhd_usrp_source_0.set_samp_rate(samp_rate) self.uhd_usrp_source_0.set_center_freq(c_freq, 0) self.uhd_usrp_source_0.set_gain(gain, 0) self.fft_vxx_0 = fft.fft_vcc(fftsize, True, (window.blackmanharris(fftsize)), True, 1) self.blocks_vector_to_stream_0 = blocks.vector_to_stream(gr.sizeof_gr_complex*1, fftsize) self.blocks_stream_to_vector_0 = blocks.stream_to_vector(gr.sizeof_gr_complex*1, fftsize) self.blocks_head_0 = blocks.head(gr.sizeof_float*1, int(int_time*samp_rate)) self.blocks_file_sink_0 = blocks.file_sink(gr.sizeof_float*1, outfile, False) self.blocks_file_sink_0.set_unbuffered(False) self.blocks_complex_to_mag_squared_0 = blocks.complex_to_mag_squared(1) ################################################## # Connections ################################################## self.connect((self.fft_vxx_0, 0), (self.blocks_vector_to_stream_0, 0)) self.connect((self.uhd_usrp_source_0, 0), (self.blocks_stream_to_vector_0, 0)) self.connect((self.blocks_vector_to_stream_0, 0), (self.blocks_complex_to_mag_squared_0, 0)) self.connect((self.blocks_complex_to_mag_squared_0, 0), (self.blocks_head_0, 0)) self.connect((self.blocks_head_0, 0), (self.blocks_file_sink_0, 0)) self.connect((self.blocks_stream_to_vector_0, 0), (self.fft_vxx_0, 0)) # QT sink close method reimplementation def get_samp_rate(self): return self.samp_rate def set_samp_rate(self, samp_rate): self.samp_rate = samp_rate self.uhd_usrp_source_0.set_samp_rate(self.samp_rate) def get_outfile(self): return self.outfile def set_outfile(self, outfile): self.outfile = outfile self.blocks_file_sink_0.open(self.outfile) def get_int_time(self): return self.int_time def set_int_time(self, int_time): self.int_time = int_time def get_gain(self): return self.gain def set_gain(self, gain): self.gain = gain self.uhd_usrp_source_0.set_gain(self.gain, 0) def get_fftsize(self): return self.fftsize def set_fftsize(self, fftsize): self.fftsize = fftsize def get_c_freq(self): return self.c_freq def set_c_freq(self, c_freq): self.c_freq = c_freq self.uhd_usrp_source_0.set_center_freq(self.c_freq, 0) if __name__ == '__main__': parser = OptionParser(option_class=eng_option, usage="%prog: [options]") (options, args) = parser.parse_args() tb = SALSA_eceiver() tb.start() tb.wait()

from __future__ import absolute_import from zerver.lib.actions import check_send_message from zerver.lib.response import json_success from zerver.decorator import REQ, has_request_variables, api_key_only_webhook_view import pprint import ujson from typing import Dict, Any PAGER_DUTY_EVENT_NAMES = { 'incident.trigger': 'triggered', 'incident.acknowledge': 'acknowledged', 'incident.unacknowledge': 'unacknowledged', 'incident.resolve': 'resolved', 'incident.assign': 'assigned', 'incident.escalate': 'escalated', 'incident.delegate': 'delineated', } def build_pagerduty_formatdict(message): # Normalize the message dict, after this all keys will exist. I would # rather some strange looking messages than dropping pages. format_dict = {} # type: Dict[str, Any] format_dict['action'] = PAGER_DUTY_EVENT_NAMES[message['type']] format_dict['incident_id'] = message['data']['incident']['id'] format_dict['incident_num'] = message['data']['incident']['incident_number'] format_dict['incident_url'] = message['data']['incident']['html_url'] format_dict['service_name'] = message['data']['incident']['service']['name'] format_dict['service_url'] = message['data']['incident']['service']['html_url'] # This key can be missing on null if message['data']['incident'].get('assigned_to_user', None): format_dict['assigned_to_email'] = message['data']['incident']['assigned_to_user']['email'] format_dict['assigned_to_username'] = message['data']['incident']['assigned_to_user']['email'].split('@')[0] format_dict['assigned_to_url'] = message['data']['incident']['assigned_to_user']['html_url'] else: format_dict['assigned_to_email'] = 'nobody' format_dict['assigned_to_username'] = 'nobody' format_dict['assigned_to_url'] = '' # This key can be missing on null if message['data']['incident'].get('resolved_by_user', None): format_dict['resolved_by_email'] = message['data']['incident']['resolved_by_user']['email'] format_dict['resolved_by_username'] = message['data']['incident']['resolved_by_user']['email'].split('@')[0] format_dict['resolved_by_url'] = message['data']['incident']['resolved_by_user']['html_url'] else: format_dict['resolved_by_email'] = 'nobody' format_dict['resolved_by_username'] = 'nobody' format_dict['resolved_by_url'] = '' trigger_message = [] trigger_subject = message['data']['incident']['trigger_summary_data'].get('subject', '') if trigger_subject: trigger_message.append(trigger_subject) trigger_description = message['data']['incident']['trigger_summary_data'].get('description', '') if trigger_description: trigger_message.append(trigger_description) format_dict['trigger_message'] = u'\n'.join(trigger_message) return format_dict def send_raw_pagerduty_json(user_profile, client, stream, message, topic): subject = topic or 'pagerduty' body = ( u'Unknown pagerduty message\n' u'``` py\n' u'%s\n' u'```') % (pprint.pformat(message),) check_send_message(user_profile, client, 'stream', [stream], subject, body) def send_formated_pagerduty(user_profile, client, stream, message_type, format_dict, topic): if message_type in ('incident.trigger', 'incident.unacknowledge'): template = (u':imp: Incident ' u'[{incident_num}]({incident_url}) {action} by ' u'[{service_name}]({service_url}) and assigned to ' u'[{assigned_to_username}@]({assigned_to_url})\n\n>{trigger_message}') elif message_type == 'incident.resolve' and format_dict['resolved_by_url']: template = (u':grinning: Incident ' u'[{incident_num}]({incident_url}) resolved by ' u'[{resolved_by_username}@]({resolved_by_url})\n\n>{trigger_message}') elif message_type == 'incident.resolve' and not format_dict['resolved_by_url']: template = (u':grinning: Incident ' u'[{incident_num}]({incident_url}) resolved\n\n>{trigger_message}') else: template = (u':no_good: Incident [{incident_num}]({incident_url}) ' u'{action} by [{assigned_to_username}@]({assigned_to_url})\n\n>{trigger_message}') subject = topic or u'incident {incident_num}'.format(**format_dict) body = template.format(**format_dict) check_send_message(user_profile, client, 'stream', [stream], subject, body) @api_key_only_webhook_view('PagerDuty') @has_request_variables def api_pagerduty_webhook(request, user_profile, client, payload=REQ(argument_type='body'), stream=REQ(default='pagerduty'), topic=REQ(default=None)): for message in payload['messages']: message_type = message['type'] if message_type not in PAGER_DUTY_EVENT_NAMES: send_raw_pagerduty_json(user_profile, client, stream, message, topic) try: format_dict = build_pagerduty_formatdict(message) except: send_raw_pagerduty_json(user_profile, client, stream, message, topic) else: send_formated_pagerduty(user_profile, client, stream, message_type, format_dict, topic) return json_success()

from django.conf.urls import include, url from django.contrib import admin urlpatterns = [ # Examples: # url(r'^$', 'aboyunapp.views.home', name='home'), # url(r'^blog/', include('blog.urls')), url(r'^admin/', include(admin.site.urls)), ]

from __future__ import (unicode_literals, division, absolute_import, print_function) from powerline.lib.watcher import create_file_watcher def list_segment_key_values(segment, theme_configs, segment_data, key, function_name=None, name=None, module=None, default=None): try: yield segment[key] except KeyError: pass found_module_key = False for theme_config in theme_configs: try: segment_data = theme_config['segment_data'] except KeyError: pass else: if function_name and not name: if module: try: yield segment_data[module + '.' + function_name][key] found_module_key = True except KeyError: pass if not found_module_key: try: yield segment_data[function_name][key] except KeyError: pass if name: try: yield segment_data[name][key] except KeyError: pass if segment_data is not None: try: yield segment_data[key] except KeyError: pass yield default def get_segment_key(merge, *args, **kwargs): if merge: ret = None for value in list_segment_key_values(*args, **kwargs): if ret is None: ret = value elif isinstance(ret, dict) and isinstance(value, dict): old_ret = ret ret = value.copy() ret.update(old_ret) else: return ret return ret else: return next(list_segment_key_values(*args, **kwargs)) def get_function(data, segment): function_name = segment['function'] if '.' in function_name: module, function_name = function_name.rpartition('.')[::2] else: module = data['default_module'] function = data['get_module_attr'](module, function_name, prefix='segment_generator') if not function: raise ImportError('Failed to obtain segment function') return None, function, module, function_name, segment.get('name') def get_string(data, segment): name = segment.get('name') return data['get_key'](False, segment, None, None, name, 'contents'), None, None, None, name segment_getters = { 'function': get_function, 'string': get_string, 'segment_list': get_function, } def get_attr_func(contents_func, key, args, is_space_func=False): try: func = getattr(contents_func, key) except AttributeError: return None else: if is_space_func: def expand_func(pl, amount, segment): try: return func(pl=pl, amount=amount, segment=segment, **args) except Exception as e: pl.exception('Exception while computing {0} function: {1}', key, str(e)) return segment['contents'] + (' ' * amount) return expand_func else: return lambda pl, shutdown_event: func(pl=pl, shutdown_event=shutdown_event, **args) def process_segment_lister(pl, segment_info, parsed_segments, side, mode, colorscheme, lister, subsegments, patcher_args): subsegments = [ subsegment for subsegment in subsegments if subsegment['display_condition'](pl, segment_info, mode) ] for subsegment_info, subsegment_update in lister(pl=pl, segment_info=segment_info, **patcher_args): draw_inner_divider = subsegment_update.pop('draw_inner_divider', False) old_pslen = len(parsed_segments) for subsegment in subsegments: if subsegment_update: subsegment = subsegment.copy() subsegment.update(subsegment_update) if 'priority_multiplier' in subsegment_update and subsegment['priority']: subsegment['priority'] *= subsegment_update['priority_multiplier'] process_segment( pl, side, subsegment_info, parsed_segments, subsegment, mode, colorscheme, ) new_pslen = len(parsed_segments) while parsed_segments[new_pslen - 1]['literal_contents'][1]: new_pslen -= 1 if new_pslen > old_pslen + 1 and draw_inner_divider is not None: for i in range(old_pslen, new_pslen - 1) if side == 'left' else range(old_pslen + 1, new_pslen): parsed_segments[i]['draw_soft_divider'] = draw_inner_divider return None def set_segment_highlighting(pl, colorscheme, segment, mode): if segment['literal_contents'][1]: return True try: highlight_group_prefix = segment['highlight_group_prefix'] except KeyError: hl_groups = lambda hlgs: hlgs else: hl_groups = lambda hlgs: [highlight_group_prefix + ':' + hlg for hlg in hlgs] + hlgs try: segment['highlight'] = colorscheme.get_highlighting( hl_groups(segment['highlight_groups']), mode, segment.get('gradient_level') ) if segment['divider_highlight_group']: segment['divider_highlight'] = colorscheme.get_highlighting( hl_groups([segment['divider_highlight_group']]), mode ) else: segment['divider_highlight'] = None except Exception as e: pl.exception('Failed to set highlight group: {0}', str(e)) return False else: return True def process_segment(pl, side, segment_info, parsed_segments, segment, mode, colorscheme): segment = segment.copy() pl.prefix = segment['name'] if segment['type'] in ('function', 'segment_list'): try: if segment['type'] == 'function': contents = segment['contents_func'](pl, segment_info) else: contents = segment['contents_func'](pl, segment_info, parsed_segments, side, mode, colorscheme) except Exception as e: pl.exception('Exception while computing segment: {0}', str(e)) return if contents is None: return if isinstance(contents, list): # Needs copying here, but it was performed at the very start of the # function segment_base = segment if contents: draw_divider_position = -1 if side == 'left' else 0 for key, i, newval in ( ('before', 0, ''), ('after', -1, ''), ('draw_soft_divider', draw_divider_position, True), ('draw_hard_divider', draw_divider_position, True), ): try: contents[i][key] = segment_base.pop(key) segment_base[key] = newval except KeyError: pass draw_inner_divider = None if side == 'right': append = parsed_segments.append else: pslen = len(parsed_segments) append = lambda item: parsed_segments.insert(pslen, item) for subsegment in (contents if side == 'right' else reversed(contents)): segment_copy = segment_base.copy() segment_copy.update(subsegment) if draw_inner_divider is not None: segment_copy['draw_soft_divider'] = draw_inner_divider draw_inner_divider = segment_copy.pop('draw_inner_divider', None) if set_segment_highlighting(pl, colorscheme, segment_copy, mode): append(segment_copy) else: segment['contents'] = contents if set_segment_highlighting(pl, colorscheme, segment, mode): parsed_segments.append(segment) elif segment['width'] == 'auto' or (segment['type'] == 'string' and segment['contents'] is not None): if set_segment_highlighting(pl, colorscheme, segment, mode): parsed_segments.append(segment) always_true = lambda pl, segment_info, mode: True get_fallback_segment = { 'name': 'fallback', 'type': 'string', 'highlight_groups': ['background'], 'divider_highlight_group': None, 'before': None, 'after': None, 'contents': '', 'literal_contents': (0, ''), 'priority': None, 'draw_soft_divider': True, 'draw_hard_divider': True, 'draw_inner_divider': True, 'display_condition': always_true, 'width': None, 'align': None, 'expand': None, 'truncate': None, 'startup': None, 'shutdown': None, '_rendered_raw': '', '_rendered_hl': '', '_len': None, '_contents_len': None, }.copy def gen_segment_getter(pl, ext, common_config, theme_configs, default_module, get_module_attr, top_theme): data = { 'default_module': default_module or 'powerline.segments.' + ext, 'get_module_attr': get_module_attr, 'segment_data': None, } def get_key(merge, segment, module, function_name, name, key, default=None): return get_segment_key(merge, segment, theme_configs, data['segment_data'], key, function_name, name, module, default) data['get_key'] = get_key def get_selector(function_name): if '.' in function_name: module, function_name = function_name.rpartition('.')[::2] else: module = 'powerline.selectors.' + ext function = get_module_attr(module, function_name, prefix='segment_generator/selector_function') if not function: pl.error('Failed to get segment selector, ignoring it') return function def get_segment_selector(segment, selector_type): try: function_name = segment[selector_type + '_function'] except KeyError: function = None else: function = get_selector(function_name) try: modes = segment[selector_type + '_modes'] except KeyError: modes = None if modes: if function: return lambda pl, segment_info, mode: ( mode in modes or function(pl=pl, segment_info=segment_info, mode=mode) ) else: return lambda pl, segment_info, mode: mode in modes else: if function: return lambda pl, segment_info, mode: ( function(pl=pl, segment_info=segment_info, mode=mode) ) else: return None def gen_display_condition(segment): include_function = get_segment_selector(segment, 'include') exclude_function = get_segment_selector(segment, 'exclude') if include_function: if exclude_function: return lambda *args: ( include_function(*args) and not exclude_function(*args)) else: return include_function else: if exclude_function: return lambda *args: not exclude_function(*args) else: return always_true def get(segment, side): segment_type = segment.get('type', 'function') try: get_segment_info = segment_getters[segment_type] except KeyError: pl.error('Unknown segment type: {0}', segment_type) return None try: contents, _contents_func, module, function_name, name = get_segment_info(data, segment) except Exception as e: pl.exception('Failed to generate segment from {0!r}: {1}', segment, str(e), prefix='segment_generator') return None if not get_key(False, segment, module, function_name, name, 'display', True): return None segment_datas = getattr(_contents_func, 'powerline_segment_datas', None) if segment_datas: try: data['segment_data'] = segment_datas[top_theme] except KeyError: pass if segment_type == 'function': highlight_groups = [function_name] else: highlight_groups = segment.get('highlight_groups') or [name] if segment_type in ('function', 'segment_list'): args = dict(( (str(k), v) for k, v in get_key(True, segment, module, function_name, name, 'args', {}).items() )) display_condition = gen_display_condition(segment) if segment_type == 'segment_list': # Handle startup and shutdown of _contents_func? subsegments = [ subsegment for subsegment in ( get(subsegment, side) for subsegment in segment['segments'] ) if subsegment ] return { 'name': name or function_name, 'type': segment_type, 'highlight_groups': None, 'divider_highlight_group': None, 'before': None, 'after': None, 'contents_func': lambda pl, segment_info, parsed_segments, side, mode, colorscheme: ( process_segment_lister( pl, segment_info, parsed_segments, side, mode, colorscheme, patcher_args=args, subsegments=subsegments, lister=_contents_func, ) ), 'contents': None, 'literal_contents': None, 'priority': None, 'draw_soft_divider': None, 'draw_hard_divider': None, 'draw_inner_divider': None, 'side': side, 'display_condition': display_condition, 'width': None, 'align': None, 'expand': None, 'truncate': None, 'startup': None, 'shutdown': None, '_rendered_raw': '', '_rendered_hl': '', '_len': None, '_contents_len': None, } if segment_type == 'function': startup_func = get_attr_func(_contents_func, 'startup', args) shutdown_func = getattr(_contents_func, 'shutdown', None) expand_func = get_attr_func(_contents_func, 'expand', args, True) truncate_func = get_attr_func(_contents_func, 'truncate', args, True) if hasattr(_contents_func, 'powerline_requires_filesystem_watcher'): create_watcher = lambda: create_file_watcher(pl, common_config['watcher']) args[str('create_watcher')] = create_watcher if hasattr(_contents_func, 'powerline_requires_segment_info'): contents_func = lambda pl, segment_info: _contents_func(pl=pl, segment_info=segment_info, **args) else: contents_func = lambda pl, segment_info: _contents_func(pl=pl, **args) else: startup_func = None shutdown_func = None contents_func = None expand_func = None truncate_func = None return { 'name': name or function_name, 'type': segment_type, 'highlight_groups': highlight_groups, 'divider_highlight_group': None, 'before': get_key(False, segment, module, function_name, name, 'before', ''), 'after': get_key(False, segment, module, function_name, name, 'after', ''), 'contents_func': contents_func, 'contents': contents, 'literal_contents': (0, ''), 'priority': segment.get('priority', None), 'draw_hard_divider': segment.get('draw_hard_divider', True), 'draw_soft_divider': segment.get('draw_soft_divider', True), 'draw_inner_divider': segment.get('draw_inner_divider', False), 'side': side, 'display_condition': display_condition, 'width': segment.get('width'), 'align': segment.get('align', 'l'), 'expand': expand_func, 'truncate': truncate_func, 'startup': startup_func, 'shutdown': shutdown_func, '_rendered_raw': '', '_rendered_hl': '', '_len': None, '_contents_len': None, } return get

import sys _b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1')) from google.protobuf import descriptor as _descriptor from google.protobuf import message as _message from google.protobuf import reflection as _reflection from google.protobuf import symbol_database as _symbol_database from google.protobuf import descriptor_pb2 # @@protoc_insertion_point(imports) _sym_db = _symbol_database.Default() DESCRIPTOR = _descriptor.FileDescriptor( name='tensorflow/contrib/tpu/proto/topology.proto', package='tensorflow.tpu', syntax='proto3', serialized_pb=_b('\n+tensorflow/contrib/tpu/proto/topology.proto\x12\x0etensorflow.tpu\"t\n\rTopologyProto\x12\x12\n\nmesh_shape\x18\x01 \x03(\x05\x12\x11\n\tnum_tasks\x18\x02 \x01(\x05\x12 \n\x18num_tpu_devices_per_task\x18\x03 \x01(\x05\x12\x1a\n\x12\x64\x65vice_coordinates\x18\x04 \x03(\x05\x42\x03\xf8\x01\x01\x62\x06proto3') ) _TOPOLOGYPROTO = _descriptor.Descriptor( name='TopologyProto', full_name='tensorflow.tpu.TopologyProto', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='mesh_shape', full_name='tensorflow.tpu.TopologyProto.mesh_shape', index=0, number=1, type=5, cpp_type=1, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None, file=DESCRIPTOR), _descriptor.FieldDescriptor( name='num_tasks', full_name='tensorflow.tpu.TopologyProto.num_tasks', index=1, number=2, type=5, cpp_type=1, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None, file=DESCRIPTOR), _descriptor.FieldDescriptor( name='num_tpu_devices_per_task', full_name='tensorflow.tpu.TopologyProto.num_tpu_devices_per_task', index=2, number=3, type=5, cpp_type=1, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None, file=DESCRIPTOR), _descriptor.FieldDescriptor( name='device_coordinates', full_name='tensorflow.tpu.TopologyProto.device_coordinates', index=3, number=4, type=5, cpp_type=1, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None, file=DESCRIPTOR), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto3', extension_ranges=[], oneofs=[ ], serialized_start=63, serialized_end=179, ) DESCRIPTOR.message_types_by_name['TopologyProto'] = _TOPOLOGYPROTO _sym_db.RegisterFileDescriptor(DESCRIPTOR) TopologyProto = _reflection.GeneratedProtocolMessageType('TopologyProto', (_message.Message,), dict( DESCRIPTOR = _TOPOLOGYPROTO, __module__ = 'tensorflow.contrib.tpu.proto.topology_pb2' # @@protoc_insertion_point(class_scope:tensorflow.tpu.TopologyProto) )) _sym_db.RegisterMessage(TopologyProto) DESCRIPTOR.has_options = True DESCRIPTOR._options = _descriptor._ParseOptions(descriptor_pb2.FileOptions(), _b('\370\001\001')) # @@protoc_insertion_point(module_scope)

from lib.common import helpers class Module: def __init__(self, mainMenu, params=[]): self.info = { 'Name': 'Get-WMIRegCachedRDPConnection', 'Author': ['@harmj0y'], 'Description': ('Uses remote registry functionality to query all entries for the ' 'Windows Remote Desktop Connection Client" on a machine. Part of PowerView.'), 'Background' : True, 'OutputExtension' : None, 'NeedsAdmin' : False, 'OpsecSafe' : True, 'Language' : 'powershell', 'MinLanguageVersion' : '2', 'Comments': [ 'https://github.com/PowerShellMafia/PowerSploit/blob/dev/Recon/' ] } # any options needed by the module, settable during runtime self.options = { # format: # value_name : {description, required, default_value} 'Agent' : { 'Description' : 'Agent to run module on.', 'Required' : True, 'Value' : '' }, 'ComputerName' : { 'Description' : 'The hostname or IP to query for local group users.', 'Required' : False, 'Value' : 'localhost' } } # save off a copy of the mainMenu object to access external functionality # like listeners/agent handlers/etc. self.mainMenu = mainMenu for param in params: # parameter format is [Name, Value] option, value = param if option in self.options: self.options[option]['Value'] = value def generate(self, obfuscate=False, obfuscationCommand=""): moduleName = self.info["Name"] # read in the common powerview.ps1 module source code moduleSource = self.mainMenu.installPath + "/data/module_source/situational_awareness/network/powerview.ps1" try: f = open(moduleSource, 'r') except: print helpers.color("[!] Could not read module source path at: " + str(moduleSource)) return "" moduleCode = f.read() f.close() # get just the code needed for the specified function script = helpers.strip_powershell_comments(moduleCode) script += "\n" + moduleName + " " for option,values in self.options.iteritems(): if option.lower() != "agent": if values['Value'] and values['Value'] != '': if values['Value'].lower() == "true": # if we're just adding a switch script += " -" + str(option) else: script += " -" + str(option) + " " + str(values['Value']) script += ' | Out-String | %{$_ + \"`n\"};"`n'+str(moduleName)+' completed!"' if obfuscate: script = helpers.obfuscate(self.mainMenu.installPath, psScript=script, obfuscationCommand=obfuscationCommand) return script

from __future__ import division import json import os import os.path # third party imports import wx # pyspend imports import db import gui CONFIG = 'config.json' OPEN = 0 SAVE = 1 def run(): spend = PySpend(redirect=False) spend.MainLoop() class PySpend(wx.App): def OnInit(self): self.config = self._read_config() self.frame = PySpendController(config=self.config, parent=None) self.frame.Show() self.SetTopWindow(self.frame) return True def OnExit(self): self._write_config() def _read_config(self): '''Read the config file.''' config = json.load(open(self._config_path(), 'r')) return config def _write_config(self): '''Write changes to the config file on exit.''' with open(self._config_path(), 'w') as f: json.dump(self.config, f, indent=4) def _config_path(self): path = os.path.dirname(__file__) return os.path.join(path, CONFIG) class PySpendController(gui.PySpendGUI): def __init__(self, config, *args, **kwargs): super(PySpendController, self).__init__(*args, **kwargs) # check database self.config = config self.db_path = config['DB'] self.check_db() self.db = db.connect(self.db_path) self._bind_events() # initialise some widgets self.config_cat_list() self.refresh_cat_list() self.refresh_category() self.config_item_list() self.refresh_item_list() def _bind_events(self): self.date_picker.Bind(wx.EVT_DATE_CHANGED, self.pick_date) self.date_spin.Bind(wx.EVT_SPIN_UP, self.date_next) self.date_spin.Bind(wx.EVT_SPIN_DOWN, self.date_prev) self.add_item.Bind(wx.EVT_BUTTON, self.new_item) self.add_cat.Bind(wx.EVT_BUTTON, self.new_cat) self.cost.Bind(wx.EVT_KILL_FOCUS, self.validate_cost) self.Bind(wx.EVT_LIST_ITEM_RIGHT_CLICK, self.delete_popup) self.menu_delete.Bind(wx.EVT_MENU, self.delete_item) ############################################################################ # open and save database files def check_db(self): '''Check that the db path is an sqlite file.''' if not self.db_path or not os.path.exists(self.db_path): msg = 'No database file. Please open an existing file, or create a new one.' caption = 'No Database' choices = ['Open', 'Create'] dlg = wx.SingleChoiceDialog(self, msg, caption, choices) if dlg.ShowModal() == wx.ID_OK: action = dlg.GetStringSelection() if action == 'Open': self.db_path = self.open_db() else: self.db_path = self.save_db() self.config['DB'] = self.db_path dlg.Destroy() if not self.db_path: self.quit_no_database() self.Destroy() self.config['DB'] = self.db_path def open_db(self): '''Open a database file.''' return self._file_dialog(OPEN) def save_db(self): '''Save a database file to a new location or create a new file when the file doesn't exist.''' return self._file_dialog(SAVE) def quit_no_database(self): '''Inform the user that no database was selected, then quit app.''' msg = 'Quitting application because no database was selected.' caption = 'Exit, no database' style = wx.OK | wx.ICON_EXCLAMATION dlg = wx.MessageDialog(self, msg, caption, style) dlg.ShowModal() dlg.Destroy() def _file_dialog(self, type_): if type_ == OPEN: style = wx.FD_OPEN | wx.FD_FILE_MUST_EXIST msg = "Open a database" else: style = wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT msg = "Save or create a database" wildcard = "Database Files (*.sqlite)|*.sqlite" dlg = wx.FileDialog(self, message=msg, wildcard=wildcard, style=style) dlg.ShowModal() new_path = dlg.GetPath() dlg.Destroy() return new_path ############################################################################ # event handlers def pick_date(self, event): self.refresh_item_list() def date_next(self, event): self.day_inc(1) def date_prev(self, event): self.day_inc(-1) def day_inc(self, inc): day = self.date_picker.GetValue() new_day = day + wx.DateSpan(0, 0, 0, inc) self.date_picker.SetValue(new_day) self.refresh_item_list() def new_item(self, event): cat = self.category.GetValue() item = self.name.GetValue().strip() if not item or not cat: return amount = int(self.cost.GetValue()) if amount == 0: return cat_id = self.db.get_catid(cat) date = self.date_picker.GetValue().FormatISODate() #print(cat_id, cat, item, amount, date) self.db.new_item(cat_id, item, amount, date) self.refresh_item_list() # set the focus back to the item text box self.name.SetFocus() self.name.SetSelection(-1, -1) def delete_popup(self, event): '''Show the delete pop-up menu on right click on a list control.''' self.delete_list = event.GetEventObject() selected_item = self.delete_list.GetFirstSelected() item_id = self.delete_list.GetItem(selected_item, 0).GetText() self.delete_item_id = int(item_id) self.PopupMenu(self.menu_delete) def delete_item(self, event): if self.delete_list is self.cat_list: # try to delete category if not self.db.category_used(self.delete_item_id): self.db.delete_category(self.delete_item_id) self.refresh_cat_list() self.refresh_category() else: # delete outgoings item self.db.delete_item(self.delete_item_id) self.refresh_item_list() def validate_cost(self, event): '''Cost should be an integer.''' try: int(self.cost.GetValue()) except ValueError: self.cost.SetBackgroundColour('pink') self.cost.SetValue('') self.cost.SetFocus() self.cost.Refresh() else: bg_colour = wx.SystemSettings.GetColour(wx.SYS_COLOUR_WINDOW) self.cost.SetBackgroundColour(bg_colour) self.cost.Refresh() def new_cat(self, event): category = self.cat_text.GetValue().strip() if not category: # blank cat name return if self.db.category_exists(category): print('category already exists') else: self.db.new_category(category) self.refresh_cat_list() self.refresh_category() ############################################################################ # category tab def config_cat_list(self): '''Initial configuration''' self.cat_list.InsertColumn(0, 'cat_id', width=0) self.cat_list.InsertColumn(1, 'Category', width=450) def refresh_cat_list(self): '''Refresh the cat list whenever change is made to categories.''' self.cat_list.DeleteAllItems() for row in self.db.categories(): self.cat_list.Append(row) ############################################################################ # item tab def config_item_list(self): '''Initial configuration of item list.''' l = wx.LIST_FORMAT_LEFT r = wx.LIST_FORMAT_RIGHT columns = [('itemid', 0, l), ('Category', 130, l), ('Item', 340, l), (u'Cost (£)', 70, r)] for i, (col, width, format) in enumerate(columns): self.item_list.InsertColumn(i, col, format=format, width=width) def refresh_item_list(self): date_iso = self.date_picker.GetValue().FormatISODate() self.item_list.DeleteAllItems() total_cost = 0 fmt = u'£{:0.2f}'.format for row in self.db.day_items(date_iso): row = list(row) cost = row[-1] total_cost += cost cost /= 100 row[-1] = fmt(cost) self.item_list.Append(row) # update total in footer self.total_cost.SetLabel(fmt(total_cost/100)) def refresh_category(self): '''The category combo box needs refreshing.''' cats = [c for _, c in self.db.categories()] self.category.Clear() self.category.AppendItems(cats)

"""Device and network emulation utilities via devtools.""" import json # Copied from # WebKit/Source/devtools/front_end/network/NetworkConditionsSelector.js # Units: # download/upload: byte/s # latency: ms NETWORK_CONDITIONS = { 'GPRS': { 'download': 50 * 1024 / 8, 'upload': 20 * 1024 / 8, 'latency': 500}, 'Regular2G': { 'download': 250 * 1024 / 8, 'upload': 50 * 1024 / 8, 'latency': 300}, 'Good2G': { 'download': 450 * 1024 / 8, 'upload': 150 * 1024 / 8, 'latency': 150}, 'Regular3G': { 'download': 750 * 1024 / 8, 'upload': 250 * 1024 / 8, 'latency': 100}, 'Good3G': { 'download': 1.5 * 1024 * 1024 / 8, 'upload': 750 * 1024 / 8, 'latency': 40}, 'Regular4G': { 'download': 4 * 1024 * 1024 / 8, 'upload': 3 * 1024 * 1024 / 8, 'latency': 20}, 'DSL': { 'download': 2 * 1024 * 1024 / 8, 'upload': 1 * 1024 * 1024 / 8, 'latency': 5}, 'WiFi': { 'download': 30 * 1024 * 1024 / 8, 'upload': 15 * 1024 * 1024 / 8, 'latency': 2} } def LoadEmulatedDevices(registry): """Loads a list of emulated devices from the DevTools JSON registry. See, for example, third_party/WebKit/Source/devtools/front_end /emulated_devices/module.json. Args: registry: A file-like object for the device registry (should be JSON). Returns: {'device_name': device} """ json_dict = json.load(registry) devices = {} for device in json_dict['extensions']: device = device['device'] devices[device['title']] = device return devices def SetUpDeviceEmulationAndReturnMetadata(connection, device): """Configures an instance of Chrome for device emulation. Args: connection: (DevToolsConnection) device: (dict) An entry from LoadEmulatedDevices(). Returns: A dict containing the device emulation metadata. """ res = connection.SyncRequest('Emulation.canEmulate') assert res['result'], 'Cannot set device emulation.' data = _GetDeviceEmulationMetadata(device) connection.SyncRequestNoResponse( 'Emulation.setDeviceMetricsOverride', {'width': data['width'], 'height': data['height'], 'deviceScaleFactor': data['deviceScaleFactor'], 'mobile': data['mobile'], 'fitWindow': True}) connection.SyncRequestNoResponse('Network.setUserAgentOverride', {'userAgent': data['userAgent']}) return data def SetUpNetworkEmulation(connection, latency, download, upload): """Configures an instance of Chrome for network emulation. See NETWORK_CONDITIONS for example (or valid?) emulation options. Args: connection: (DevToolsConnection) latency: (float) Latency in ms. download: (float) Download speed (Bytes / s). upload: (float) Upload speed (Bytes / s). """ res = connection.SyncRequest('Network.canEmulateNetworkConditions') assert res['result'], 'Cannot set network emulation.' connection.SyncRequestNoResponse( 'Network.emulateNetworkConditions', {'offline': False, 'latency': latency, 'downloadThroughput': download, 'uploadThroughput': upload}) def BandwidthToString(bandwidth): """Converts a bandwidth to string. Args: bandwidth: The bandwidth to convert in byte/s. Must be a multiple of 1024/8. Returns: A string compatible with wpr --{up,down} command line flags. """ assert bandwidth % (1024/8) == 0 bandwidth_kbps = (int(bandwidth) * 8) / 1024 if bandwidth_kbps % 1024: return '{}Kbit/s'.format(bandwidth_kbps) return '{}Mbit/s'.format(bandwidth_kbps / 1024) def _GetDeviceEmulationMetadata(device): """Returns the metadata associated with a given device.""" return {'width': device['screen']['vertical']['width'], 'height': device['screen']['vertical']['height'], 'deviceScaleFactor': device['screen']['device-pixel-ratio'], 'mobile': 'mobile' in device['capabilities'], 'userAgent': device['user-agent']}

import socket, threading, random, multiprocessing, time def processClient(client, address): print('In', threading.currentThread().name, 'client descriptor', client, 'client address', address) client.send(b' Welcome to this server') while True: data = client.recv(1024) print('-> From', address, 'get data: ', data) if not data or data.decode('utf-8') == 'exit': client.send(b' Bye') break client.send(b' Hello %s' % (data)) client.close() def server(address, port): fd = socket.socket(socket.AF_INET, socket.SOCK_STREAM) if isinstance(address, str) and isinstance(port, int): fd.bind((address, port)) else: raise ValueError('params invalid') fd.listen(3) print('>>> socket listen in %s:%s' % (address, port)) for index in range(3): client, addr = fd.accept() print('>>> client connected', '%s/3' % (index)) t = threading.Thread(target = processClient, args = (client, addr), name = 'Client Worker') t.start() print('>>> service end. close socket') fd.close() def client(server): if len(server) != 2: raise ValueError('params invalid') print('Client start', threading.currentThread().name) serv = socket.socket(socket.AF_INET, socket.SOCK_STREAM) serv.connect(server) print(' > recv data: ', serv.recv(1024)) for index in range(random.randint(1, 3)): msg = '' for chi in range(5): msg += chr(random.randint(65, 94)) serv.send(msg.encode('utf-8')) print(' > recv data: ', serv.recv(1024)) serv.send(b'exit') print(' > recv data: ', serv.recv(1024)) serv.close() if __name__ == '__main__': serv = multiprocessing.Process(target = server, args = ('127.0.0.1', 9527)) serv.start() for index in range(3): t = threading.Thread(target = client, args = (('127.0.0.1', 9527),), name = 'User') t.start() t.join() serv.terminate()

"""Stand-alone fitting utilities""" import numpy as np from scipy.special import gamma, psi from ..misc import easylsq from ..misc.errorvalue import ErrorValue __all__ = ['fit_shullroess'] def fit_shullroess(q, Intensity, Error, R0=None, r=None): """Do a Shull-Roess fitting on the scattering data. Inputs: q: np.ndarray[ndim=1] vector of the q values (4*pi*sin(theta)/lambda) Intensity: np.ndarray[ndim=1] Intensity vector Error: np.ndarray[ndim=1] Error of the intensity (absolute uncertainty, 1sigma) R0: scalar first guess for the mean radius (None to autodetermine, default) r: np.ndarray[ndim=1] vector of the abscissa of the resulting size distribution (None to autodetermine, default) Output: A: ErrorValue the fitted value of the intensity scaling factor r0: the r0 parameter of the maxwellian size distribution n: the n parameter of the maxwellian size distribution r: the abscissa of the fitted size distribution maxw: the size distribution stat: the statistics dictionary, returned by nlsq_fit() Note: This first searches for r0, which best linearizes the log(Intensity) vs. log(q**2+3/r0**2) relation. After this is found, the parameters of the fitted line give the parameters of a Maxwellian-like particle size distribution function. After it a proper least squares fitting is carried out, using the obtained values as initial parameters. """ q = np.array(q) Intensity = np.array(Intensity) Error = np.array(Error) if R0 is None: r0s = np.linspace(1, 2 * np.pi / q.min(), 1000) def naive_fit_chi2(q, Intensity, r0): p = np.polyfit(np.log(q ** 2 + 3 / r0 ** 2), np.log(Intensity), 1) return ((np.polyval(p, q) - Intensity) ** 2).sum() / (len(q) - 3) chi2 = np.array([naive_fit_chi2(q, Intensity, r0) for r0 in r0s.tolist()]) R0 = r0s[chi2 == chi2.min()][0] def naive_fit(q, Intensity, r0): p = np.polyfit(np.log(q ** 2 + 3 / r0 ** 2), np.log(Intensity), 1) return np.exp(p[1]), -2 * p[0] - 4 K, n = naive_fit(q, Intensity, R0) def SR_function(q, A, r0, n): return A * (q ** 2 + 3 / r0 ** 2) ** (-(n + 4.) * 0.5) p, dp, statdict = easylsq.nlsq_fit(q, Intensity, Error, SR_function, (K, R0, n)) n = ErrorValue(p[2], dp[2]) r0 = ErrorValue(p[1], dp[1]) A = ErrorValue(p[0], dp[0]) if r is None: r = np.linspace(np.pi / q.max(), np.pi / q.min(), 1000) return A, r0, n, r, maxwellian(r, r0, n), statdict def maxwellian(r, r0, n): """Maxwellian-like distribution of spherical particles Inputs: ------- r: np.ndarray or scalar radii r0: positive scalar or ErrorValue mean radius n: positive scalar or ErrorValue "n" parameter Output: ------- the distribution function and its uncertainty as an ErrorValue containing arrays. The uncertainty of 'r0' and 'n' is taken into account. Notes: ------ M(r)=2*r^n/r0^(n+1)*exp(-r^2/r0^2) / gamma((n+1)/2) """ r0 = ErrorValue(r0) n = ErrorValue(n) expterm = np.exp(-r ** 2 / r0.val ** 2) dmaxdr0 = -2 * r ** n.val * r0.val ** (-n.val - 4) * ((n.val + 1) * r0.val ** 2 - 2 * r ** 2) * expterm / gamma((n.val + 1) * 0.5) dmaxdn = -r ** n.val * r0.val ** (-n.val - 1) * expterm * (2 * np.log(r0.val) - 2 * np.log(r) + psi((n.val + 1) * 0.5)) / gamma((n.val + 1) * 0.5) maxwellian = 2 * r ** n.val * r0.val ** (-n.val - 1) * expterm / gamma((n.val + 1) * 0.5) dmaxwellian = (dmaxdn ** 2 * n.err ** 2 + dmaxdr0 ** 2 * r0.err ** 2) ** 0.5 return ErrorValue(maxwellian, dmaxwellian)

''' This script parses uni-math symbols from http://milde.users.sourceforge.net/LUCR/Math/data/unimathsymbols.txt and save the result as a json file. The result is used to generate command intellisense for LaTeX Workshop. ''' import json def remove_relation_character(description): """ From unimathsymbols.txt 8. descriptive _`comments` The descriptive comments provide more information about the character, or its specific appearance or use. Some descriptions contain references to related commands, marked by a character describing the relation :=: equals (alias commands), :#: approx (compat mapping, different character with same glyph), :x: → cross reference/see also (related, false friends, and name clashes), :t: text (text mode command), followed by requirements in parantheses, and delimited by commas. """ tokens = description.split(',') sanitized_description_items = [] for tok in tokens: t = tok.strip() if t[0] in ('x', '#', '=', 't') and t[1] == ' ': t = t[2:] sanitized_description_items.append(t) return ', '.join(sanitized_description_items) def generate_unimathsymbols_intel(infile, json_out): """ Generate intellisense data in json format for the unicode math symbols :param infile: unimathsymbols.txt :param json_out: the path to the unimathsymbols.json file """ data = {} with open(infile, encoding='utf-8') as f: for line in f: if line[0] == '#': continue segments = line.split('^') if segments[3] == '': continue if segments[3][0] == '\\': segments[3] = segments[3][1:] data[segments[3]] = { 'command': segments[3], 'detail': segments[1], # 'documentation': segments[7].strip().capitalize() 'documentation': remove_relation_character(segments[7]).capitalize() } if segments[6] != '' and segments[6][0] != '-': data[segments[3]]['detail'] += f' ("{segments[6]}" command)' json.dump(data, open(json_out, 'w', encoding='utf-8'), indent=2, separators=(',', ': '), sort_keys=True, ensure_ascii=False)

__author__ = 'frank' import zstacklib.utils.daemon as daemon import zstacklib.utils.http as http import zstacklib.utils.log as log import zstacklib.utils.shell as shell import zstacklib.utils.iptables as iptables import zstacklib.utils.jsonobject as jsonobject import zstacklib.utils.lock as lock import zstacklib.utils.linux as linux from zstacklib.utils import plugin import os import functools import traceback import pprint import threading logger = log.get_logger(__name__) class AgentResponse(object): def __init__(self, success=True, error=None): self.success = success self.error = error if error else '' def replyerror(func): @functools.wraps(func) def wrap(*args, **kwargs): try: return func(*args, **kwargs) except Exception as e: content = traceback.format_exc() err = '%s\n%s\nargs:%s' % (str(e), content, pprint.pformat([args, kwargs])) rsp = AgentResponse() rsp.success = False rsp.error = str(e) logger.warn(err) return jsonobject.dumps(rsp) return wrap class IscsiAgent(object): http_server = http.HttpServer(port=7760) http_server.logfile_path = log.get_logfile_path() def __init__(self): self.plugin_path = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'plugins') self.plugin_rgty = plugin.PluginRegistry(self.plugin_path) def start(self, in_thread=True): self.plugin_rgty.configure_plugins(self) self.plugin_rgty.start_plugins() if in_thread: self.http_server.start_in_thread() else: self.http_server.start() def stop(self): self.plugin_rgty.stop_plugins() self.http_server.stop() class IscsiDaemon(daemon.Daemon): def __init__(self, pidfile): super(IscsiDaemon, self).__init__(pidfile) def run(self): self.agent = IscsiAgent() self.agent.start(in_thread=False)

import pygame class Message(pygame.sprite.Sprite): """A class som simplify message writing.""" align_left = 'left'; align_right = 'right'; align_center = 'center'; def __init__(self, msglist, title=None, rect=None, vector=(0,0), align=align_left, linepadding=0.1, padding=0.1, fontsize=20, fontname=None, center=None, fgcolor=pygame.Color(255,255,255,255), bgcolor=pygame.Color(0,0,0,255)): """rect: pygame.Rect msglist: tuple or list of strings vector: tuple, coordinates added for each msg align: alignet on the surface padding: space aroung the text fontsize: fontname: center: fgcolor: pygame.Color bgcolor: pygame.Color""" pygame.sprite.Sprite.__init__(self); if(rect != None and not isinstance(rect, pygame.Rect) and not isinstance(rect, tuple)): raise TypeError('Rect is neither a pygame.Rect nor a tuple'); if(not isinstance(fgcolor, pygame.Color) and not isinstance(bgcolor, pygame.Color)): raise TypeError('fg/bgcolor is not a pygame.Color'); if(not isinstance(fontsize, int)): raise TypeError('font is not an int'); if(not isinstance(msglist, tuple) and not isinstance(msglist, list)): raise TypeError('msglist is neither a list nor a tuple'); if(not isinstance(vector, tuple)): raise TypeError('vector is not a tuple'); self.rect = pygame.Rect(rect) if(rect != None) else pygame.Rect(((1,1),(1,1))); if(center == None and rect == None): scR = pygame.display.get_surface().get_rect(); self.center = (scR.centerx, scR.centery -scR.centery*0.3); else: self.center = center; self.msglist = msglist; self.vector = vector; self.image = pygame.Surface(self.rect.topleft); self.align = align; self.font = pygame.font.Font(fontname, fontsize); self.fgcolor = fgcolor; self.bgcolor = bgcolor; self.padding = padding; self.title = title; self.linepadding = linepadding; self.update(); def update(self): """Create a surface with the actual text.""" self.image.fill(self.bgcolor); textList = []; if(self.title != None): self.font.set_underline(True); self.font.set_bold(True); textList.append(self.font.render(self.title, True, self.fgcolor)); self.font.set_underline(False); self.font.set_bold(False); for msg in self.msglist: # Create text textList.append(self.font.render(msg, True, self.fgcolor)); ## Find the widest one width = 0; height = 0; for txt in textList: if(txt.get_rect().width > width): width = txt.get_rect().width; if(self.vector[1] == 0): height += txt.get_rect().height; width += self.vector[0]*len(textList); height += self.vector[1]*len(textList); ## Rescale the surface to fit the whole text self.image = pygame.transform.scale(self.image, (width+int(width*self.padding*2), height+int(height*self.padding*2))); self.rect.size = self.image.get_rect().size; ## Set rect as left aligned. We might change it later. tmpRect = pygame.Rect(((int(width*self.padding),int(height*self.padding)),(0,0))); imgRect = self.image.get_rect(); for txt in textList: ## Make the text aligned right if(self.align == self.align_right): print(str.format("--- tmpRect {0} {1} {2}", tmpRect, tmpRect.left, tmpRect.right)); tmpRect.left = int(imgRect.width - txt.get_rect().width - imgRect.width*self.padding); print(str.format("=== tmpRect {0} {1} {2}", tmpRect, tmpRect.left, tmpRect.right)); ## Make the text aligned center if(self.align == self.align_center): tmpRect.left = int(self.image.get_rect().width/2 - txt.get_rect().width/2); self.image.blit(txt, tmpRect.topleft); if(self.vector[1] == 0): self.vector = (self.vector[0],int(txt.get_rect().height*(1+self.linepadding))); tmpRect = tmpRect.move(self.vector); ## Set the whole sprite to requested center if(self.center != None): self.rect.center = self.center;

import yaml from argparse import ArgumentParser from constants import GOOGLE_CLOUD_TEST from dict_util import deep_get from yaml_util import load_resources_yaml ''' Remove all resources considered to be Kuberenetes Helm tests from a given manifest file. ''' _HELM_HOOK_KEY = 'helm.sh/hook' _HOOK_SUCCESS = 'test-success' _HOOK_FAILURE = 'test-failure' def main(): parser = ArgumentParser() parser.add_argument("--manifest", help="the manifest file location to be cleared of tests") parser.add_argument("--deploy_tests", action="store_true", help="indicates whether tests should be deployed") args = parser.parse_args() manifest = args.manifest resources = load_resources_yaml(manifest) filtered_resources = [] for resource in resources: helm_hook = deep_get(resource, "metadata", "annotations", _HELM_HOOK_KEY) if helm_hook is None: filtered_resources.append(resource) elif helm_hook == _HOOK_SUCCESS: if args.deploy_tests: annotations = deep_get(resource, "metadata", "annotations") del annotations[_HELM_HOOK_KEY] annotations[GOOGLE_CLOUD_TEST] = "test" filtered_resources.append(resource) elif helm_hook == _HOOK_FAILURE: if args.deploy_tests: raise Exception("Helm hook {} is not supported".format(helm_hook)) else: raise Exception("Helm hook {} is not supported".format(helm_hook)) with open(manifest, "w") as out: yaml.dump_all(filtered_resources, out, default_flow_style=False, explicit_start=True) if __name__ == "__main__": main()

__author__ = 'scarroll' from pygov.usda.enums import * from pygov.usda.domain import Nutrient, Food, FoodReport from pygov.base.client import DataGovClientBase, get_response_data class UsdaClient(DataGovClientBase): def __init__(self, api_gov_key): super(UsdaClient, self).__init__('usda/', api_gov_key) def list_nutrients(self, max, offset=0, sort='n'): uri = super(UsdaClient, self).build_uri(UsdaApis.ndb.value, UsdaUriActions.list.value, lt=UsdaNdbListType.all_nutrients.value, max=max, offset=offset, sort=sort) response_data = get_response_data(uri) nutrients = self.__build_nutrients_list(response_data) return nutrients def list_foods(self, max, offset=0, sort='n'): uri = super(UsdaClient, self).build_uri(UsdaApis.ndb.value, UsdaUriActions.list.value, lt=UsdaNdbListType.food.value, max=max, offset=offset, sort=sort) response_data = get_response_data(uri) foods = self.__build_foods_list(response_data) return foods def get_food_report(self, ndb_food_id, report_type=UsdaNdbReportType.basic): uri = super(UsdaClient, self).build_uri(UsdaApis.ndb.value, UsdaUriActions.report.value, type=report_type.value, ndbno=ndb_food_id) response_data = get_response_data(uri) return FoodReport.from_response_data(response_data) def get_nutrient_report(self, ndb_nutrient_id, report_type=UsdaNdbReportType.basic): uri = super(UsdaClient, self).build_uri(UsdaApis.ndb.value, UsdaUriActions.report.value, type=report_type.value, ndbno=ndb_nutrient_id) def __build_item_list(self, data, usda_class): result = list() data_list = data['list']['item'] for raw_data in data_list: result.append(usda_class.from_response_data(raw_data)) return result def __build_nutrients_list(self, response_data): return self.__build_item_list(response_data, Nutrient) def __build_foods_list(self, response_data): return self.__build_item_list(response_data, Food) def __build_food_report(self, response_data): return FoodReport(response_data)

from __future__ import unicode_literals from django.db import models, migrations class Migration(migrations.Migration): dependencies = [ ('cbh_chembl_model_extension', '0019_auto_20150721_0515'), ] operations = [ migrations.RemoveField( model_name='skinningconfig', name='created_by', ), ]

""" Python API for KB SRU """ import sys import urllib import requests from lxml import etree SRU_BASEURL = 'http://jsru.kb.nl/sru/sru' SRU_BASEURL += '?version=1.2&maximumRecords=%i' SRU_BASEURL += '&operation=searchRetrieve' SRU_BASEURL += '&startRecord=%i' SRU_BASEURL += '&recordSchema=%s' SRU_BASEURL += '&x-collection=%s&query=%s' SETS = {'ANP': {'collection': 'ANP', 'description_en': 'Radio Bulletins ANP Press Agency', 'description_nl': 'ANP Radiobulletins Digitaal', 'metadataPrefix': 'didl', 'recordschema': 'dcx', 'setname': 'anp', 'time_period': [1937, 1989]}, 'DPO': {'collection': 'DPO_boekdeel', 'description_en': 'Early Dutch Books Online', 'description_nl': 'Early Dutch Books Online', 'metadataPrefix': 'didl', 'recordschema': 'ddd', 'setname': 'DPO', 'time_period': [1781, 1800]}, 'BYVANCK': {'description_en': 'Medieval Illuminated Manuscripts', 'description_nl': 'Middeleeuwse Verluchte Handschriften', 'metadataPrefix': 'dcx', 'setname': 'BYVANCK', 'time_period': [500, 1500]}, 'SGD': {'description_en': 'States General Digital', 'description_nl': 'Staten-Generaal Digitaal', 'metadataPrefix': 'dcx', 'setname': 'sgd:register', 'time_period': [1962, 1994]}, 'GGC': {'collection': 'GGC', 'description_en': 'General Catalogue KB', 'description_nl': 'Algemene Catalogus KB', 'metadataPrefix': 'dcx', 'recordschema': 'dcx', 'setname': 'ggc', 'time_period': [1937, 2016]}} # No idea what to use here? # Name spaces in GGC records srw_ns = 'http://www.loc.gov/zing/srw/' tel_ns = 'http://krait.kb.nl/coop/tel/handbook/telterms.html' xsi_ns = 'http://www.w3.org/2001/XMLSchema-instance' dc_ns = 'http://purl.org/dc/elements/1.1/' dcterms_ns = 'http://purl.org/dc/terms/' dcx_ns = 'http://krait.kb.nl/coop/tel/handbook/telterms.html' NSMAPGGC = {"srw": srw_ns, "tel": tel_ns, "xsi": xsi_ns, "dc": dc_ns, "dcterms": dcterms_ns, "dcx": dcx_ns} class response(): def __init__(self, record_data, sru): self.record_data = record_data self.sru = sru def getElementText(self, tagName, attributeName, attributeValue): # Returns text content of all elements for which tag matches tagName, # and attribute value equals attributeValue. Set attributeName to empty # string to get all tagName matches. textFields = [] for r in self.record_data.iter(): if r.tag == tagName: if attributeName != '': try: if r.attrib[attributeName] == attributeValue: textFields.append(r.text) except KeyError: pass else: textFields.append(r.text) return textFields @property def records(self): if self.sru.nr_of_records == 0: record_data = "<xml></xml>" else: ns = {'zs': 'http://www.loc.gov/zing/srw/'} record_data = self.record_data.xpath("zs:records/zs:record", namespaces=ns)[0] return record(record_data, self.sru) # Below property functions all return a list with all instances that satisfy # criteria @property def typesDutch(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}type', '{http://www.w3.org/XML/1998/namespace}lang', 'nl')) @property def typesDCMI(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}type', '{http://www.w3.org/2001/XMLSchema-instance}type', 'DCMIType')) @property def identifiersISBN(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}identifier', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcterms:ISBN')) @property def identifiersBrinkman(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}identifier', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcx:Brinkman')) @property def identifiersURI(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}identifier', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcterms:URI')) @property def identifiersOCLC(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}identifier', '{http://www.w3.org/2001/XMLSchema-instance}type', 'OCLC')) @property def languagesDutch(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}language', '{http://www.w3.org/XML/1998/namespace}lang', 'nl')) @property def languagesEnglish(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}language', '{http://www.w3.org/XML/1998/namespace}lang', 'en')) @property def languagesFrench(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}language', '{http://www.w3.org/XML/1998/namespace}lang', 'fr')) @property def languagesISO639(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}language', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcterms:ISO639-2')) @property def dates(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}date', '', '')) @property def extents(self): return(self.getElementText('{http://purl.org/dc/terms/}extent', '', '')) @property def creators(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}creator', '', '')) @property def contributors(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}contributor', '', '')) @property def titles(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}title', '', '')) @property def titlesMain(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}title', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcx:maintitle')) @property def titlesIntermediate(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}title', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcx:intermediatetitle')) @property def publishers(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}publisher', '', '')) @property def countries(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}country', '', '')) @property def subjectsBrinkman(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}subject', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcx:Brinkman')) @property def subjectsISO9707(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}subject', '{http://www.w3.org/2001/XMLSchema-instance}type', 'ISO_9707_[Brinkman]')) @property def subjectsUNESCO(self): return(self.getElementText('{http://purl.org/dc/elements/1.1/}subject', '{http://www.w3.org/2001/XMLSchema-instance}type', 'UNESCO')) @property def collectionIdentifiers(self): return(self.getElementText('{http://purl.org/dc/terms/}isPartOf', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcx:collectionIdentifier')) @property def recordIdentifiersURI(self): return(self.getElementText('{http://krait.kb.nl/coop/tel/handbook/telterms.html}recordIdentifier', '{http://www.w3.org/2001/XMLSchema-instance}type', 'dcterms:URI')) @property def annotations(self): # Note that annotations sometimes contain language or itenID attibutes; # ignored for now (collect everything). return(self.getElementText('{http://krait.kb.nl/coop/tel/handbook/telterms.html}annotation', '', '')) class record(): def __init__(self, record_data, sru): self.record_data = record_data self.sru = sru def __iter__(self): return self # This works under Python 2.7 def next(self): if self.sru.nr_of_records == 0: raise StopIteration if self.sru.startrecord < self.sru.nr_of_records + 1: record_data = self.sru.run_query() self.sru.startrecord += 1 return response(record_data, self.sru) else: raise StopIteration # This works under Python 3 def __next__(self): if self.sru.nr_of_records == 0: raise StopIteration if self.sru.startrecord < self.sru.nr_of_records + 1: record_data = self.sru.run_query() self.sru.startrecord += 1 return response(record_data, self.sru) else: raise StopIteration class sru(): DEBUG = False collection = False maximumrecords = 50 nr_of_records = 0 query = "" recordschema = False sru_collections = SETS startrecord = 0 def search(self, query, collection=False, startrecord=1, maximumrecords=1, recordschema=False): self.maximumrecords = maximumrecords if sys.version.startswith('3'): self.query = urllib.parse.quote_plus(query) elif sys.version.startswith('2'): self.query = urllib.quote_plus(query) self.startrecord = startrecord if collection not in self.sru_collections: raise Exception('Unknown collection') self.collection = self.sru_collections[collection]['collection'] if not self.collection: raise Exception('Error, no collection specified') if not recordschema: self.recordschema = self.sru_collections[collection]['recordschema'] else: self.recordschema = recordschema record_data = self.run_query() nr_of_records = [i.text for i in record_data.iter() if i.tag.endswith('numberOfRecords')][0] self.nr_of_records = int(nr_of_records) if self.nr_of_records > 0: return response(record_data, self) return False def run_query(self): url = SRU_BASEURL % (self.maximumrecords, self.startrecord, self.recordschema, self.collection, self.query) if self.DEBUG: sys.stdout.write(url) r = requests.get(url) if not r.status_code == 200: raise Exception('Error while getting data from %s' % url) record_data = etree.fromstring(r.content) return record_data