feat: push custom dataset

README.md

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+---
+license: apache-2.0
+task_categories:
+- feature-extraction
+- sentence-similarity
+language:
+- en
+tags:
+- sentence-transformers
+- feature-extraction
+- sentence-similarity
+- mteb
+- Medical
+- Nutrition
+- Information
+- Retrieval
+- Dataset
+pretty_name: medical information retrieval
+size_categories:
+- n<1K
+---
+# NFCorpus-8-8-gpt-4o-2024-05-13-855191 Dataset
+
+## Dataset Description
+
+The dataset "medical information retrieval" is a generated dataset designed to support the development of domain specific embedding models for retrieval tasks.
+
+## Associated Model
+
+This dataset was used to train the [**NFCorpus-8-8-gpt-4o-2024-05-13-855191**](https://huggingface.co/fine-tuned/NFCorpus-8-8-gpt-4o-2024-05-13-855191) model.
+
+## How to Use
+To use this dataset for model training or evaluation, you can load it using the Hugging Face `datasets` library as follows:
+
+```python
+from datasets import load_dataset
+
+dataset = load_dataset("fine-tuned/NFCorpus-8-8-gpt-4o-2024-05-13-855191")
+print(dataset['test'][0])
+```

document_types.txt

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+natural language query
+medical document
+relevance judgment

samples_eval.jsonl

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+{"query": "recurrence of cancer treatment options", "pos": ["Therapies available for the return of malignancy."], "neg": ["Statistics and data on the likelihood of living after the return of a malignant disease.", "Indicators of the return of a malignant disease in its initial stages.", "Factors that contribute to the likelihood of a malignancy returning.", "Evaluations and screenings to detect the return of malignant tumors.", "Strategies to avert the return of malignant tumors.", "Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition.", "Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."]}
+{"query": "recurrence of cancer survival rates", "pos": ["Statistics and data on the likelihood of living after the return of a malignant disease."], "neg": ["Therapies available for the return of malignancy.", "Indicators of the return of a malignant disease in its initial stages.", "Factors that contribute to the likelihood of a malignancy returning.", "Evaluations and screenings to detect the return of malignant tumors.", "Strategies to avert the return of malignant tumors.", "Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition.", "Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."]}
+{"query": "recurrence of cancer early signs", "pos": ["Indicators of the return of a malignant disease in its initial stages."], "neg": ["Therapies available for the return of malignancy.", "Statistics and data on the likelihood of living after the return of a malignant disease.", "Factors that contribute to the likelihood of a malignancy returning.", "Evaluations and screenings to detect the return of malignant tumors.", "Strategies to avert the return of malignant tumors.", "Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition.", "Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."]}
+{"query": "recurrence of cancer risk factors", "pos": ["Factors that contribute to the likelihood of a malignancy returning."], "neg": ["Therapies available for the return of malignancy.", "Statistics and data on the likelihood of living after the return of a malignant disease.", "Indicators of the return of a malignant disease in its initial stages.", "Evaluations and screenings to detect the return of malignant tumors.", "Strategies to avert the return of malignant tumors.", "Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition.", "Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."]}
+{"query": "recurrence of cancer diagnostic tests", "pos": ["Evaluations and screenings to detect the return of malignant tumors."], "neg": ["Therapies available for the return of malignancy.", "Statistics and data on the likelihood of living after the return of a malignant disease.", "Indicators of the return of a malignant disease in its initial stages.", "Factors that contribute to the likelihood of a malignancy returning.", "Strategies to avert the return of malignant tumors.", "Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition.", "Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."]}
+{"query": "recurrence of cancer prevention methods", "pos": ["Strategies to avert the return of malignant tumors."], "neg": ["Therapies available for the return of malignancy.", "Statistics and data on the likelihood of living after the return of a malignant disease.", "Indicators of the return of a malignant disease in its initial stages.", "Factors that contribute to the likelihood of a malignancy returning.", "Evaluations and screenings to detect the return of malignant tumors.", "Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition.", "Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."]}
+{"query": "recurrence of cancer patient support", "pos": ["Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition."], "neg": ["Therapies available for the return of malignancy.", "Statistics and data on the likelihood of living after the return of a malignant disease.", "Indicators of the return of a malignant disease in its initial stages.", "Factors that contribute to the likelihood of a malignancy returning.", "Evaluations and screenings to detect the return of malignant tumors.", "Strategies to avert the return of malignant tumors.", "Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."]}
+{"query": "recurrence of cancer clinical trials", "pos": ["Studies and experiments focused on the reappearance of malignant tumors, including investigations and assessments conducted to evaluate the effectiveness of treatments in preventing the return of the disease."], "neg": ["Therapies available for the return of malignancy.", "Statistics and data on the likelihood of living after the return of a malignant disease.", "Indicators of the return of a malignant disease in its initial stages.", "Factors that contribute to the likelihood of a malignancy returning.", "Evaluations and screenings to detect the return of malignant tumors.", "Strategies to avert the return of malignant tumors.", "Information regarding the reappearance of malignancy and resources or assistance available for individuals experiencing this condition."]}

samples_train.jsonl

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+{"query": "Can rejuvenation help?", "pos": ["Is it possible for treatments aimed at reversing aging to be beneficial?"], "neg": ["Is it effective to reverse the aging process?", "Are there positive effects associated with anti-aging treatments?", "Does the process of reversing aging yield positive results?", "Can the process of restoring youthful characteristics be beneficial?", "Is it possible for anti-aging treatments to be effective?", "Is it advisable to continue with anti-aging treatments?", "Can revitalization lead to enhancements?"]}
+{"query": "Will rejuvenation work?", "pos": ["Is it effective to reverse the aging process?"], "neg": ["Is it possible for treatments aimed at reversing aging to be beneficial?", "Are there positive effects associated with anti-aging treatments?", "Does the process of reversing aging yield positive results?", "Can the process of restoring youthful characteristics be beneficial?", "Is it possible for anti-aging treatments to be effective?", "Is it advisable to continue with anti-aging treatments?", "Can revitalization lead to enhancements?"]}
+{"query": "Does rejuvenation benefit?", "pos": ["Are there positive effects associated with anti-aging treatments?"], "neg": ["Is it possible for treatments aimed at reversing aging to be beneficial?", "Is it effective to reverse the aging process?", "Does the process of reversing aging yield positive results?", "Can the process of restoring youthful characteristics be beneficial?", "Is it possible for anti-aging treatments to be effective?", "Is it advisable to continue with anti-aging treatments?", "Can revitalization lead to enhancements?"]}
+{"query": "Is rejuvenation effective?", "pos": ["Does the process of reversing aging yield positive results?"], "neg": ["Is it possible for treatments aimed at reversing aging to be beneficial?", "Is it effective to reverse the aging process?", "Are there positive effects associated with anti-aging treatments?", "Can the process of restoring youthful characteristics be beneficial?", "Is it possible for anti-aging treatments to be effective?", "Is it advisable to continue with anti-aging treatments?", "Can revitalization lead to enhancements?"]}
+{"query": "Could rejuvenation assist?", "pos": ["Can the process of restoring youthful characteristics be beneficial?"], "neg": ["Is it possible for treatments aimed at reversing aging to be beneficial?", "Is it effective to reverse the aging process?", "Are there positive effects associated with anti-aging treatments?", "Does the process of reversing aging yield positive results?", "Is it possible for anti-aging treatments to be effective?", "Is it advisable to continue with anti-aging treatments?", "Can revitalization lead to enhancements?"]}
+{"query": "Might rejuvenation succeed?", "pos": ["Is it possible for anti-aging treatments to be effective?"], "neg": ["Is it possible for treatments aimed at reversing aging to be beneficial?", "Is it effective to reverse the aging process?", "Are there positive effects associated with anti-aging treatments?", "Does the process of reversing aging yield positive results?", "Can the process of restoring youthful characteristics be beneficial?", "Is it advisable to continue with anti-aging treatments?", "Can revitalization lead to enhancements?"]}
+{"query": "Should rejuvenation proceed?", "pos": ["Is it advisable to continue with anti-aging treatments?"], "neg": ["Is it possible for treatments aimed at reversing aging to be beneficial?", "Is it effective to reverse the aging process?", "Are there positive effects associated with anti-aging treatments?", "Does the process of reversing aging yield positive results?", "Can the process of restoring youthful characteristics be beneficial?", "Is it possible for anti-aging treatments to be effective?", "Can revitalization lead to enhancements?"]}
+{"query": "Would rejuvenation improve?", "pos": ["Can revitalization lead to enhancements?"], "neg": ["Is it possible for treatments aimed at reversing aging to be beneficial?", "Is it effective to reverse the aging process?", "Are there positive effects associated with anti-aging treatments?", "Does the process of reversing aging yield positive results?", "Can the process of restoring youthful characteristics be beneficial?", "Is it possible for anti-aging treatments to be effective?", "Is it advisable to continue with anti-aging treatments?"]}

search_type.txt

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+medical information retrieval

topics.txt

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+AUC (Area Under Curve)
+Abstract
+Academic
+Access
+Accuracy
+Acquisition
+Adaptive Learning
+Adversarial Training
+Affective
+Affiliation
+Aggregation
+Algorithm
+Algorithmic
+Algorithmic Complexity
+Alignment
+Alignment-based
+Ambiguity
+Analysis
+Anecdotal
+Annotation
+Annotation-based
+Annotation-free
+Anomaly Detection
+Anonymization
+Application
+Approximation
+Arbitrary
+Archive
+Article
+Artifact
+Artificial Intelligence
+Assessment
+Association
+Assumption
+Asymptotic
+Asynchronous
+Attention Mechanism
+Attribute
+Attribute-based
+Authorship
+Automata
+Automated
+Auxiliary
+Availability
+Average
+Averaging
+Axiomatic
+BM25
+BMJ
+Bibliometrics
+Biochemistry
+Biocomputing
+Biocuration
+Bioengineering
+Bioethics
+Bioinformatics
+Biological
+Biologicals
+Biomarker
+Biomedical
+Biomedicine
+Biophysics
+Biorepository
+Biosciences
+Biospecimen
+Biostatistical
+Biostatistics
+Biotechnology
+Boolean
+Boteva
+Carcinogenic
+Carcinoma
+Cardiomyopathy
+Cardiothoracic
+Cardiovascular
+Catabolism
+Catalyst
+Catheterization
+Causal
+Causation
+Causative
+Cellular
+Cerebral
+Chemotherapy
+Cholesterol
+Chromosome
+Chronic
+Circulatory
+Citation
+Clinical
+Clinician
+Cognitive
+Cohort
+Colonoscopy
+Comorbidity
+Compendium
+Complementary
+Complexity
+Compliance
+Comprehensive
+Computational
+Concordance
+Confounding
+Congenital
+Consensus
+Consortium
+Contextualization
+Contraindication
+Convalescence
+Correlation
+Corticosteroid
+Curation
+Curative
+Cytokine
+Cytology
+Cytotoxic
+Data Extraction
+Data Format
+Data Retrieval
+Dataset
+Development Subset
+Direct Link
+Document Length
+Documents Data
+Download
+ECIR
+Evaluation
+Experiments
+Extraction
+FAQ
+Factual
+File
+File Format
+Format
+Full-Text
+Full-Text Learning
+Functionality
+Gholipour
+Greger
+Heidelberg
+Hierarchical
+Hyperparameter
+Hypothesis
+Indexing
+Indirect Links
+Inference
+Informatics
+Information
+Information Retrieval
+Ingestion
+Initialization
+Instance
+Integration
+Interoperability
+Intervention
+Inverted
+Irrelevance
+Judgment
+Judgments
+Kernel
+Knowledge
+Knowledge-based
+Learning
+Learning to Rank
+Level
+Link
+Links
+MD5
+Medical
+Medical Documents
+Medical Information Retrieval
+Medical Terminology
+Methods
+Michael Greger
+NDCG
+NFCorpus
+NIST
+NLP
+Natural Language Processing
+Natural Language Queries
+Non-Technical English
+Non-Technical Language
+NutritionFacts
+NutritionFacts.org
+Padova
+Paper
+Parameters
+Partitioning
+Pathology
+Patient
+Pediatric
+Peer-reviewed
+Pharmacology
+Phenotype
+Physiology
+Pipeline
+Plagiarism
+Platform
+Population
+Postdoctoral
+Precision
+Preprocessing
+Prevalence
+Probability
+Proceedings
+PubMed
+Publication
+Quality
+Quantitative
+Quantization
+Quantum
+Quarantine
+Quasi-experimental
+Queries
+Queries Data
+Query
+Query Level
+Query-Document Pairs
+Query-Document Relevance
+Query-Document Retrieval
+Query-level
+Querying
+Questionnaire
+Queueing
+Quiescence
+Quinolone
+Quintile
+Quorum-sensing
+Quotient
+RNA Sequencing
+Radiology
+Random Split
+Randomization
+Rank Dataset
+Rarefaction
+Reagent
+Receptor
+Recombinant
+Reconstitution
+Rectification
+Recurrence
+Redundancy
+Refinement
+Regeneration
+Regimen
+Regression
+Regulation
+Rehabilitation
+Reinforcement
+Rejuvenation
+Relapse
+Relevance
+Relevance Judgments
+Relevance Judgments Construction
+Relevance Judgments Extraction
+Relevance Judgments Levels
+Relevance Judgments Process
+Relevance Judgments System
+Relevance Judgments Types
+Relevance Levels
+Relevance Links
+Relevance Metrics
+Relevance Scores
+Relevance System
+Reliability
+Remediation
+Remission
+Renal
+Reperfusion
+Replication
+Repression
+Reproducibility
+Research
+Research Paper
+Research Publication
+Research Work
+Resection
+Reservoir
+Resistance
+Resolution
+Resonance
+Respiration
+Restoration
+Retention
+Retrieval
+Retrieval Data Set
+Retrieval Experiments
+Retrieval Methods
+Retrograde
+Retrovirus
+Revascularization
+Revised Corpus
+Revitalization
+Rheology
+Rheumatology
+Ribonucleic
+Rickets
+Risk Assessment
+Rodenticide
+Script
+Script v9.0
+Sec
+Sec 6.1
+Section
+Service
+Setup
+Source
+Sources
+Split
+Statnlpgroup
+Subset
+Subset Evaluation
+Subsets
+System
+Tagging
+Taxonomy
+Technical
+Technical Language
+Terminology
+Terms of Service
+Testing
+Testing Subset
+Textual
+Tfidf
+Thesaurus
+Threshold
+Topic
+Training
+Training Subset
+Transcription
+Translational
+Treemaps
+Triage
+URL
+Usage
+User-generated
+Validation
+Vectorization
+Visualization
+Web-based
+Web-crawling
+Web-scraping
+Weighting
+Wellness
+Whitelisting
+XML
+YAML
+Zero-shot
+Zoning
+natural language queries
+non-technical English
+non-technical language
+nutrition
+nutritionfacts
+nutritionfacts.org
+nutritionfacts.org data
+nutritionfacts.org queries
+nutritionfacts.org website