Lawhy
commited on
Commit
•
7d97f9b
1
Parent(s):
a679a0e
update foodon complex SI
Browse files- OntoLAMA.py +4 -1
- README.md +30 -2
OntoLAMA.py
CHANGED
@@ -39,7 +39,7 @@ _DESCRIPTION = """\
|
|
39 |
OntoLAMA: LAnguage Model Analysis datasets for Ontology Subsumption Inference.
|
40 |
"""
|
41 |
|
42 |
-
_URL = lambda name: f"https://zenodo.org/record/
|
43 |
|
44 |
# TODO: Add a link to an official homepage for the dataset here
|
45 |
_HOMEPAGE = "https://krr-oxford.github.io/DeepOnto/"
|
@@ -80,6 +80,9 @@ class OntoLAMA(datasets.GeneratorBasedBuilder):
|
|
80 |
datasets.BuilderConfig(
|
81 |
name="foodon-atomic-SI", version=VERSION, description="Atomic SI dataset created from the Food Ontology."
|
82 |
),
|
|
|
|
|
|
|
83 |
datasets.BuilderConfig(
|
84 |
name="go-atomic-SI", version=VERSION, description="Atomic SI dataset created from the Gene Ontology."
|
85 |
),
|
|
|
39 |
OntoLAMA: LAnguage Model Analysis datasets for Ontology Subsumption Inference.
|
40 |
"""
|
41 |
|
42 |
+
_URL = lambda name: f"https://zenodo.org/record/7699244/files/{name}.zip?download=1"
|
43 |
|
44 |
# TODO: Add a link to an official homepage for the dataset here
|
45 |
_HOMEPAGE = "https://krr-oxford.github.io/DeepOnto/"
|
|
|
80 |
datasets.BuilderConfig(
|
81 |
name="foodon-atomic-SI", version=VERSION, description="Atomic SI dataset created from the Food Ontology."
|
82 |
),
|
83 |
+
datasets.BuilderConfig(
|
84 |
+
name="foodon-complex-SI", version=VERSION, description="Complex SI dataset created from the Gene Ontology."
|
85 |
+
),
|
86 |
datasets.BuilderConfig(
|
87 |
name="go-atomic-SI", version=VERSION, description="Atomic SI dataset created from the Gene Ontology."
|
88 |
),
|
README.md
CHANGED
@@ -140,6 +140,34 @@ dataset_info:
|
|
140 |
num_examples: 12906
|
141 |
download_size: 19264134
|
142 |
dataset_size: 50602187
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
143 |
---
|
144 |
|
145 |
# OntoLAMA: LAnguage Model Analysis for Ontology Subsumption Inference
|
@@ -214,8 +242,8 @@ An example in the **biMNLI** dataset created from the MNLI dataset is as follows
|
|
214 |
|--------|-----------|--------------|--------------------------------------------------------------------------|
|
215 |
| schema | 894 | - | Atomic SI: 808/404/2,830 |
|
216 |
| doid | 11,157 | - | Atomic SI: 90,500/11,312/11,314 |
|
217 |
-
| foodon | 30,995 | 2,383 | Atomic SI: 768,486/96,060/96,062 <br /> Complex SI: 1,
|
218 |
-
| go | 43,303 | 11,456 | Atomic SI: 772,870/96,608/96,610 <br /> Complex SI:
|
219 |
| MNLI | - | - | biMNLI: 235,622/26,180/12,906 |
|
220 |
|
221 |
|
|
|
140 |
num_examples: 12906
|
141 |
download_size: 19264134
|
142 |
dataset_size: 50602187
|
143 |
+
- config_name: foodon-complex-SI
|
144 |
+
features:
|
145 |
+
- name: v_sub_concept
|
146 |
+
dtype: string
|
147 |
+
- name: v_super_concept
|
148 |
+
dtype: string
|
149 |
+
- name: label
|
150 |
+
dtype:
|
151 |
+
class_label:
|
152 |
+
names:
|
153 |
+
'0': negative_subsumption
|
154 |
+
'1': positive_subsumption
|
155 |
+
- name: axiom
|
156 |
+
dtype: string
|
157 |
+
- name: anchor_axiom
|
158 |
+
dtype: string
|
159 |
+
splits:
|
160 |
+
- name: train
|
161 |
+
num_bytes: 2553731
|
162 |
+
num_examples: 3754
|
163 |
+
- name: validation
|
164 |
+
num_bytes: 1271721
|
165 |
+
num_examples: 1850
|
166 |
+
- name: test
|
167 |
+
num_bytes: 8926305
|
168 |
+
num_examples: 13080
|
169 |
+
download_size: 1064602
|
170 |
+
dataset_size: 12751757
|
171 |
---
|
172 |
|
173 |
# OntoLAMA: LAnguage Model Analysis for Ontology Subsumption Inference
|
|
|
242 |
|--------|-----------|--------------|--------------------------------------------------------------------------|
|
243 |
| schema | 894 | - | Atomic SI: 808/404/2,830 |
|
244 |
| doid | 11,157 | - | Atomic SI: 90,500/11,312/11,314 |
|
245 |
+
| foodon | 30,995 | 2,383 | Atomic SI: 768,486/96,060/96,062 <br /> Complex SI: 3,754/1,850/13,080 |
|
246 |
+
| go | 43,303 | 11,456 | Atomic SI: 772,870/96,608/96,610 <br /> Complex SI: ... |
|
247 |
| MNLI | - | - | biMNLI: 235,622/26,180/12,906 |
|
248 |
|
249 |
|