Species
stringclasses 2
values | eccDNA type
stringclasses 4
values | eccDNA ID
stringlengths 9
14
| Genome version
stringclasses 2
values | Location
stringlengths 13
25
| Chr
stringclasses 25
values | Start
float64 1
249M
⌀ | End
float64 1.47k
249M
⌀ | Health/Disease
stringclasses 2
values | Tissue/Cell line
stringlengths 3
56
| Disease Name
stringlengths 7
51
| Experiment/Prediction
stringclasses 2
values | Validation Strategies
stringlengths 3
141
| Treatment
stringclasses 11
values | Oncogene
stringlengths 2
237
| Source
stringlengths 13
295
| Library type
stringclasses 9
values | Pubmed ID
stringlengths 7
13
| Public Date
stringclasses 25
values | Function/Characteristic of ecDNA
stringlengths 13
494
| Remarks
stringlengths 2
2.89k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Homo sapiens | ecDNA | ec_hsa_101 | hg19 | chr12:76688945-76709436 | chr12 | 76,688,945 | 76,709,436 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_102 | hg19 | chr12:92833733-92835733 | chr12 | 92,833,733 | 92,835,733 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57817510-58780431 |
Homo sapiens | ecDNA | ec_hsa_103 | hg19 | chr12:9560850-11604481 | chr12 | 9,560,850 | 11,604,481 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | OLR1,STYK1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_104 | hg19 | chr12:96333950-96427875 | chr12 | 96,333,950 | 96,427,875 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_105 | hg19 | chr12:9743798-9778217 | chr12 | 9,743,798 | 9,778,217 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:9115317-9396958,chr2:12471634-12820977,chr2:14740024-21892972,chr2:22803129-23710448,chr12:4282258-4876809. |
Homo sapiens | ecDNA | ec_hsa_106 | hg19 | chr13:103406098-112969310 | chr13 | 103,406,098 | 112,969,310 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | IRS2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_107 | hg19 | chr13:103498984-103836012 | chr13 | 103,498,984 | 103,836,012 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6446);Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_108 | hg19 | chr13:112590637-112830828 | chr13 | 112,590,637 | 112,830,828 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6448);Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_109 | hg19 | chr13:32973920-32974175 | chr13 | 32,973,920 | 32,974,175 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:52176931-52490663,chr7:91378817-93967491 |
Homo sapiens | ecDNA | ec_hsa_110 | hg19 | chr13:32973970-32974176 | chr13 | 32,973,970 | 32,974,176 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:143413933-143414139,chr7:52176931-52600663,chr7:91378814-93967491 |
Homo sapiens | ecDNA | ec_hsa_111 | hg19 | chr13:88380423-88381059 | chr13 | 88,380,423 | 88,381,059 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr9:11029911-15061738 |
Homo sapiens | ecDNA | ec_hsa_112 | hg19 | chr14:39544383-53726529 | chr14 | 39,544,383 | 53,726,529 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_113 | hg19 | chr14:85941092-98642754 | chr14 | 85,941,092 | 98,642,754 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | TCL1A,TCL1B,TCL6 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_114 | hg19 | chr14:96897075-96897580 | chr14 | 96,897,075 | 96,897,580 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_115 | hg19 | chr14:96897077-96897581 | chr14 | 96,897,077 | 96,897,581 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_116 | hg19 | chr14:96897087-96897579 | chr14 | 96,897,087 | 96,897,579 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_117 | hg19 | chr14:96897107-96897581 | chr14 | 96,897,107 | 96,897,581 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_118 | hg19 | chr14:96897116-96897581 | chr14 | 96,897,116 | 96,897,581 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_119 | hg19 | chr15:50377640-50378173 | chr15 | 50,377,640 | 50,378,173 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496686-58315685 |
Homo sapiens | ecDNA | ec_hsa_120 | hg19 | chr15:50377642-50378172 | chr15 | 50,377,642 | 50,378,172 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716236-11716766,chr7:54796492-55548745,chr8:127442805-133327046,chr8:135105698-135663156,chr12:57496694-58315685. |
Homo sapiens | ecDNA | ec_hsa_121 | hg19 | chr15:50377651-50398160 | chr15 | 50,377,651 | 50,398,160 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496714-58315685, |
Homo sapiens | ecDNA | ec_hsa_122 | hg19 | chr15:50377663-50378167 | chr15 | 50,377,663 | 50,378,167 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716263-11716767,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496724-58315685. |
Homo sapiens | ecDNA | ec_hsa_123 | hg19 | chr15:59880274-59880808 | chr15 | 59,880,274 | 59,880,808 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110 |
Homo sapiens | ecDNA | ec_hsa_124 | hg19 | chr15:72966648-74751792 | chr15 | 72,966,648 | 74,751,792 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | PML,STRA6 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_125 | hg19 | chr16:50534123-58666050 | chr16 | 50,534,123 | 58,666,050 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AKTIP,CSNK2A2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_126 | hg19 | chr17:28657133-73678584 | chr17 | 28,657,133 | 73,678,584 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | CDC6,CSF3,ERBB2,ETV4,EVI2A,FZD2,GNA13,HLF,IGF2BP1,INTS2,ITGA3,JUP,LHX1,MIEN1,NME1,PPM1D,PRKCA,RARA,RNF43,RPL23,SPAG9,SRSF1,STAT3,SUZ12,TAF15,TBC1D3C,TBX2,THRA,TNS4,WNT3 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_127 | hg19 | chr17:30138299-74067386 | chr17 | 30,138,299 | 74,067,386 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CDC6,CSF3,ERBB2,ETV4,FZD2,GNA13,HLF,IGF2BP1,INTS2,ITGA3,JUP,LHX1,MIEN1,NME1,PPM1D,PRKCA,RARA,RNF43,RPL23,SPAG9,SRSF1,STAT3,SUZ12,TAF15,TBC1D3C,TBX2,THRA,TNS4,WNT3 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_128 | hg19 | chr18:55431412-55431877 | chr18 | 55,431,412 | 55,431,877 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_129 | hg19 | chr19:2482515-56025839 | chr19 | 2,482,515 | 56,025,839 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | ACTN4,AKT2,ARHGEF1,AXL,BAX,BCL2L12,BCL3,BRD4,CCNE1,CEACAM6,CRTC1,ELAVL1,ELL,GSK3A,HAS1,JUNB,JUND,KLF2,MLLT1,PPP1R13L,PPP1R14A,PPP2R1A,RAB8A,RRAS,SBSN,SERTAD1,SERTAD3,SIRT6,TGFB1,TINCR,UCA1,UHRF1,URI1,VAV1,ZBTB7A | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Astrocytoma |
Homo sapiens | ecDNA | ec_hsa_130 | hg19 | chr19:9986479-40171599 | chr19 | 9,986,479 | 40,171,599 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | ACTN4,BRD4,CCNE1,CRTC1,ELL,JUNB,JUND,KLF2,PPP1R14A,RAB8A,SBSN,UCA1,URI1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_131 | hg19 | chr2:117784681-118114666 | chr2 | 117,784,681 | 118,114,666 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_132 | hg19 | chr2:12471634-12820977 | chr2 | 12,471,634 | 12,820,977 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:9115317-9396958,chr2:14740024-21892972,chr2:22803129-23710448,chr12:4282258-4876809,chr12:9743798-9778217. |
Homo sapiens | ecDNA | ec_hsa_133 | hg19 | chr2:131709830-161675466 | chr2 | 131,709,830 | 161,675,466 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CXCR4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_134 | hg19 | chr2:136721093-137773677 | chr2 | 136,721,093 | 137,773,677 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | CXCR4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_135 | hg19 | chr2:136869536-137939536 | chr2 | 136,869,536 | 137,939,536 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | CXCR4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_136 | hg19 | chr2:136874997-137798352 | chr2 | 136,874,997 | 137,798,352 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | CXCR4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_137 | hg19 | chr2:136874997-137880739 | chr2 | 136,874,997 | 137,880,739 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | CXCR4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_138 | hg19 | chr2:143413933-143414139 | chr2 | 143,413,933 | 143,414,139 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:52176931-52600663 ,chr7:91378814-93967491,chr13:32973970-32974176 |
Homo sapiens | ecDNA | ec_hsa_139 | hg19 | chr2:145245907-145748806 | chr2 | 145,245,907 | 145,748,806 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_140 | hg19 | chr2:145249705-145743220 | chr2 | 145,249,705 | 145,743,220 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_141 | hg19 | chr2:145263828-145743220 | chr2 | 145,263,828 | 145,743,220 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_142 | hg19 | chr2:145272882-145772117 | chr2 | 145,272,882 | 145,772,117 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_143 | hg19 | chr2:14740024-21892972 | chr2 | 14,740,024 | 21,892,972 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MYCN | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:9115317-9396958,chr2:12471634-12820977,chr2:22803129-23710448,chr12:4282258-4876809,chr12:9743798-9778217. |
Homo sapiens | ecDNA | ec_hsa_144 | hg19 | chr2:14930877-15241168 | chr2 | 14,930,877 | 15,241,168 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_145 | hg19 | chr2:14930877-16607368 | chr2 | 14,930,877 | 16,607,368 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MYCN | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_146 | hg19 | chr2:14930877-16609687 | chr2 | 14,930,877 | 16,609,687 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MYCN | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_147 | hg19 | chr2:15243934-162523785 | chr2 | 15,243,934 | 162,523,785 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AFF3,ALK,BCL11A,CAPG,CXCR4,EML4,EPCAM,FHL2,GLI2,MEIS1,MERTK,MYCN,PAX8,PRKCE,REL,SERTAD2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_148 | hg19 | chr2:153212545-153453279 | chr2 | 153,212,545 | 153,453,279 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_149 | hg19 | chr2:153212545-153453318 | chr2 | 153,212,545 | 153,453,318 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_150 | hg19 | chr2:153212545-153454678 | chr2 | 153,212,545 | 153,454,678 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_151 | hg19 | chr2:153212545-153454687 | chr2 | 153,212,545 | 153,454,687 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_152 | hg19 | chr2:15586615-16607368 | chr2 | 15,586,615 | 16,607,368 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MYCN | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_153 | hg19 | chr2:156427797-156528071 | chr2 | 156,427,797 | 156,528,071 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54492203-55717667 |
Homo sapiens | ecDNA | ec_hsa_154 | hg19 | chr2:156527854-156528081 | chr2 | 156,527,854 | 156,528,081 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:Recurent Glioblastoma and necrosis;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54492203-55717667 |
Homo sapiens | ecDNA | ec_hsa_155 | hg19 | chr2:15779202-16720742 | chr2 | 15,779,202 | 16,720,742 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | MYCN | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_156 | hg19 | chr2:15850065-17100340 | chr2 | 15,850,065 | 17,100,340 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | MYCN | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_157 | hg19 | chr2:170029734-172038781 | chr2 | 170,029,734 | 172,038,781 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_158 | hg19 | chr2:170029734-172448527 | chr2 | 170,029,734 | 172,448,527 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_159 | hg19 | chr2:170116857-172249767 | chr2 | 170,116,857 | 172,249,767 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_160 | hg19 | chr2:170459734-172089734 | chr2 | 170,459,734 | 172,089,734 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_161 | hg19 | chr2:186422091-189603225 | chr2 | 186,422,091 | 189,603,225 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_162 | hg19 | chr2:206666463-206877006 | chr2 | 206,666,463 | 206,877,006 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_163 | hg19 | chr2:206666463-206877027 | chr2 | 206,666,463 | 206,877,027 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734. |
Homo sapiens | ecDNA | ec_hsa_164 | hg19 | chr2:206666463-206877029 | chr2 | 206,666,463 | 206,877,029 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_165 | hg19 | chr2:206666463-206877046 | chr2 | 206,666,463 | 206,877,046 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_166 | hg19 | chr2:22803129-23710448 | chr2 | 22,803,129 | 23,710,448 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:9115317-9396958,chr2:12471634-12820977,chr2:14740024-21892972,chr12:4282258-4876809,chr12:9743798-9778217. |
Homo sapiens | ecDNA | ec_hsa_167 | hg19 | chr2:24976652-25251094 | chr2 | 24,976,652 | 25,251,094 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027.3.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_168 | hg19 | chr2:25431975-25432494 | chr2 | 25,431,975 | 25,432,494 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_169 | hg19 | chr2:25431975-25452474 | chr2 | 25,431,975 | 25,452,474 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_170 | hg19 | chr2:25431989-25432491 | chr2 | 25,431,989 | 25,432,491 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_171 | hg19 | chr2:25432017-25432497 | chr2 | 25,432,017 | 25,432,497 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_172 | hg19 | chr2:39328-6675962 | chr2 | 39,328 | 6,675,962 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:7006555-8947620,chr2:9115317-9396958,chr2:12471634-12820977,chr2:14740024-21892972,chr2:22803129-23710448,chr12:4282258-4876809,chr12:9743798-9778217. |
Homo sapiens | ecDNA | ec_hsa_173 | hg19 | chr2:4312896-175630680 | chr2 | 4,312,896 | 175,630,680 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AFF3,ALK,BCL11A,CAPG,CXCR4,EML4,EPCAM,FHL2,GLI2,ID2,MEIS1,MERTK,MYCN,PAX8,PRKCE,REL,SERTAD2,TRIB2,YWHAQ | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_174 | hg19 | chr2:44698988-44719489 | chr2 | 44,698,988 | 44,719,489 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_175 | hg19 | chr2:44699004-44719503 | chr2 | 44,699,004 | 44,719,503 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_176 | hg19 | chr2:44699024-44699501 | chr2 | 44,699,024 | 44,699,501 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_177 | hg19 | chr2:4777131-7339409 | chr2 | 4,777,131 | 7,339,409 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_178 | hg19 | chr2:4813976-5114749 | chr2 | 4,813,976 | 5,114,749 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6455;Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_179 | hg19 | chr2:5130682-5491387 | chr2 | 5,130,682 | 5,491,387 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_180 | hg19 | chr2:5844046-6092517 | chr2 | 5,844,046 | 6,092,517 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6457);Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_181 | hg19 | chr2:6811404-7056157 | chr2 | 6,811,404 | 7,056,157 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_182 | hg19 | chr2:6811427-7056157 | chr2 | 6,811,427 | 7,056,157 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_183 | hg19 | chr2:6811742-7061780 | chr2 | 6,811,742 | 7,061,780 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_184 | hg19 | chr2:7006555-8947620 | chr2 | 7,006,555 | 8,947,620 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | ID2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:9115317-9396958,chr2:12471634-12820977,chr2:14740024-21892972,chr2:22803129-23710448,chr12:4282258-4876809,chr12:9743798-9778217. |
Homo sapiens | ecDNA | ec_hsa_185 | hg19 | chr2:7047972-7305114 | chr2 | 7,047,972 | 7,305,114 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6458);Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_186 | hg19 | chr2:70700509-70701027 | chr2 | 70,700,509 | 70,701,027 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:88274596-88295113,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_187 | hg19 | chr2:70700526-70701027 | chr2 | 70,700,526 | 70,701,027 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_188 | hg19 | chr2:70700527-70701026 | chr2 | 70,700,527 | 70,701,026 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:88294194-88294693,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_189 | hg19 | chr2:70700543-70701020 | chr2 | 70,700,543 | 70,701,020 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:88274599-88295075,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_190 | hg19 | chr2:7165696-18283381 | chr2 | 7,165,696 | 18,283,381 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | ID2,MYCN,TRIB2,YWHAQ | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligoastrocytoma |
Homo sapiens | ecDNA | ec_hsa_191 | hg19 | chr2:86857-24146223 | chr2 | 86,857 | 24,146,223 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | ID2,MYCN,TRIB2,YWHAQ | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_192 | hg19 | chr2:88274596-88295113 | chr2 | 88,274,596 | 88,295,113 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811742-7061780,chr2:14930877-15241168,chr2:15586615-16607368,chr2:24976652-25251094,chr2:25431975-25432494,chr2:70700509-70701027,chr2:117784681-118114666,chr2:136721093-137773677,chr2:145272882-145772117,chr2:153212545-153453279,chr2:170029734-172448527,chr2:206666463-206877046,chrX:53934948-53935466,chrX:124484644-124485162. |
Homo sapiens | ecDNA | ec_hsa_193 | hg19 | chr2:88274599-88295075 | chr2 | 88,274,599 | 88,295,075 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811427-7056157,chr2:14930877-16609687,chr2:24976652-25251094,chr2:25432017-25432497,chr2:44699024-44699501,chr2:70700543-70701020,chr2:117784681-118114666,chr2:136869536-137939536,chr2:145263828-145743220,chr2:153212545-153454687,chr2:170116857-172249767,chr2:206666463-206877006,chrX:133253122-133253599. |
Homo sapiens | ecDNA | ec_hsa_194 | hg19 | chr2:88294192-88294693 | chr2 | 88,294,192 | 88,294,693 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chr4:129319969-129320470,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_195 | hg19 | chr2:88294194-88294693 | chr2 | 88,294,194 | 88,294,693 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-15241168,chr2:15779202-16720742,chr2:24976652-25251094,chr2:25431975-25452474,chr2:44699004-44719503,chr2:70700527-70701026,chr2:117784681-118114666,chr2:136874997-137880739,chr2:145249705-145743220,chr2:153212545-153453318,chr2:170459734-172089734,chr2:206666463-206877027. |
Homo sapiens | ecDNA | ec_hsa_196 | hg19 | chr2:9115317-9396958 | chr2 | 9,115,317 | 9,396,958 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:12471634-12820977,chr2:14740024-21892972,chr2:22803129-23710448,chr12:4282258-4876809,chr12:9743798-9778217. |
Homo sapiens | ecDNA | ec_hsa_197 | hg19 | chr20:25648370-25848861 | chr20 | 25,648,370 | 25,848,861 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_198 | hg19 | chr20:25729296-25749801 | chr20 | 25,729,296 | 25,749,801 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_199 | hg19 | chr20:25748289-25782127 | chr20 | 25,748,289 | 25,782,127 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_200 | hg19 | chr20:25762035-25862539 | chr20 | 25,762,035 | 25,862,539 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |