Species
stringclasses 2
values | eccDNA type
stringclasses 4
values | eccDNA ID
stringlengths 9
14
| Genome version
stringclasses 2
values | Location
stringlengths 13
25
| Chr
stringclasses 25
values | Start
float64 1
249M
⌀ | End
float64 1.47k
249M
⌀ | Health/Disease
stringclasses 2
values | Tissue/Cell line
stringlengths 3
56
| Disease Name
stringlengths 7
51
| Experiment/Prediction
stringclasses 2
values | Validation Strategies
stringlengths 3
141
| Treatment
stringclasses 11
values | Oncogene
stringlengths 2
237
| Source
stringlengths 13
295
| Library type
stringclasses 9
values | Pubmed ID
stringlengths 7
13
| Public Date
stringclasses 25
values | Function/Characteristic of ecDNA
stringlengths 13
494
| Remarks
stringlengths 2
2.89k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Homo sapiens | ecDNA | ec_hsa_201 | hg19 | chr20:25762637-25863111 | chr20 | 25,762,637 | 25,863,111 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_202 | hg19 | chr20:25968409-26168913 | chr20 | 25,968,409 | 26,168,913 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_203 | hg19 | chr20:26035162-26075703 | chr20 | 26,035,162 | 26,075,703 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:34451476-34472017,chr7:33008879-33043572,chr7:39893002-39923938,chr7:44005669-45019578,chr7:54034474-63305857,chr7:63635311-63635852,chr7:75287045-75699935,chr7:91591064-94810434,chr20:25748289-25782127. |
Homo sapiens | ecDNA | ec_hsa_204 | hg19 | chr20:26035500-26088579 | chr20 | 26,035,500 | 26,088,579 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_205 | hg19 | chr20:26053723-26074197 | chr20 | 26,053,723 | 26,074,197 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_206 | hg19 | chr20:54188564-54189088 | chr20 | 54,188,564 | 54,189,088 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_207 | hg19 | chr20:54188605-54189088 | chr20 | 54,188,605 | 54,189,088 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr3:111174081-111384563,chr8:127493240-131068628,chr11:93361795-93362278,chrX:23578881-23579364. |
Homo sapiens | ecDNA | ec_hsa_208 | hg19 | chr21:15706512-35730017 | chr21 | 15,706,512 | 35,730,017 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | MIR155HG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligoastrocytoma |
Homo sapiens | ecDNA | ec_hsa_209 | hg19 | chr21:23357595-23358085 | chr21 | 23,357,595 | 23,358,085 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr12:57503752-58562513,chrX:116866170-116866660. |
Homo sapiens | ecDNA | ec_hsa_210 | hg19 | chr3:111174081-111274570 | chr3 | 111,174,081 | 111,274,570 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr12:57503752-58562513,chr21:23357595-23358085,chrX:116866170-116866660. |
Homo sapiens | ecDNA | ec_hsa_211 | hg19 | chr3:111174081-111274578 | chr3 | 111,174,081 | 111,274,578 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr5:57853485-57853983,chr7:54793202-55548745,chr8:127398869-132765370,chr8:135119160-136243156,chr12:57399247-58562513,chrX:154748217-154748715. |
Homo sapiens | ecDNA | ec_hsa_212 | hg19 | chr3:111174081-111274583 | chr3 | 111,174,081 | 111,274,583 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr7:54793202-55548745,chr8:126238838-132308654,chr8:135119160-136243156,chr12:57503752-58562513. |
Homo sapiens | ecDNA | ec_hsa_213 | hg19 | chr3:111174081-111384563 | chr3 | 111,174,081 | 111,384,563 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr8:127493240-131068628,chr11:93361795-93362278,chr20:54188605-54189088,chrX:23578881-23579364.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr8:127493240-131068628,chr11:93361795-93362278,chr20:54188605-54189088,chrX:23578881-23579364. |
Homo sapiens | ecDNA | ec_hsa_214 | hg19 | chr3:111174081-111384604 | chr3 | 111,174,081 | 111,384,604 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390. |
Homo sapiens | ecDNA | ec_hsa_215 | hg19 | chr3:111174084-111384613 | chr3 | 111,174,084 | 111,384,613 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748084-78748614,chr8:127137778-131068628,chr11:93361756-93362286,chrX:116866132-116866662. |
Homo sapiens | ecDNA | ec_hsa_216 | hg19 | chr3:11716211-11716729 | chr3 | 11,716,211 | 11,716,729 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54729139-55479139,chr8:127442805-132833866,chr8:135105698-135663156,chr12:57496689-58315685. |
Homo sapiens | ecDNA | ec_hsa_217 | hg19 | chr3:11716232-11716765 | chr3 | 11,716,232 | 11,716,765 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496686-58315685,chr15:50377640-50378173. |
Homo sapiens | ecDNA | ec_hsa_218 | hg19 | chr3:11716236-11716766 | chr3 | 11,716,236 | 11,716,766 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54796492-55548745,chr8:127442805-133327046,chr8:135105698-135663156,chr12:57496694-58315685,chr15:50377642-50378172. |
Homo sapiens | ecDNA | ec_hsa_219 | hg19 | chr3:11716256-11716765 | chr3 | 11,716,256 | 11,716,765 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496714-58315685,chr15:50377651-50398160. |
Homo sapiens | ecDNA | ec_hsa_220 | hg19 | chr3:11716261-11716764 | chr3 | 11,716,261 | 11,716,764 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr3:111174081-111274583,chr7:54793202-55548745,chr8:126238838-132308654,chr8:135119160-136243156. |
Homo sapiens | ecDNA | ec_hsa_221 | hg19 | chr3:11716263-11716767 | chr3 | 11,716,263 | 11,716,767 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr12:57496724-58315685,chr15:50377663-50378167. |
Homo sapiens | ecDNA | ec_hsa_222 | hg19 | chr3:11716264-11716766 | chr3 | 11,716,264 | 11,716,766 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54649106-55477598,chr12:57409417-58562513,chr12:70496679-70497181. |
Homo sapiens | ecDNA | ec_hsa_223 | hg19 | chr3:11716267-11716767 | chr3 | 11,716,267 | 11,716,767 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,,chr12:57502937-58562513chr12:70496679-70497179. |
Homo sapiens | ecDNA | ec_hsa_224 | hg19 | chr3:11716269-11716767 | chr3 | 11,716,269 | 11,716,767 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174081-111274578,chr5:57853485-57853983,chr7:54793202-55548745,chr8:127398869-132765370,chr8:135119160-136243156,chr12:57399247-58562513,chrX:154748217-154748715. |
Homo sapiens | ecDNA | ec_hsa_225 | hg19 | chr3:11716277-11716767 | chr3 | 11,716,277 | 11,716,767 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr12:57503752-58562513,,chr21:23357595-23358085,chrX:116866170-116866660. |
Homo sapiens | ecDNA | ec_hsa_226 | hg19 | chr3:11716283-11716766 | chr3 | 11,716,283 | 11,716,766 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54809106-55477598,chr8:127210847-133305515,chr8:135082366-135082849,chr8:135105698-135699519,chr12:57503737-58357571. |
Homo sapiens | ecDNA | ec_hsa_227 | hg19 | chr3:124827797-183517090 | chr3 | 124,827,797 | 183,517,090 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CCNL1,DCUN1D1,ECT2,EIF5A2,FNDC3B,MECOM,MRAS,PIK3CA,PRKCI,RHO,SEC62,SKIL,SOX2,WWTR1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_228 | hg19 | chr3:135235750-183285802 | chr3 | 135,235,750 | 183,285,802 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CCNL1,DCUN1D1,ECT2,EIF5A2,FNDC3B,MECOM,MRAS,PIK3CA,PRKCI,SEC62,SKIL,SOX2,WWTR1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_229 | hg19 | chr3:21782468-36351260 | chr3 | 21,782,468 | 36,351,260 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_230 | hg19 | chr3:2482442-25397283 | chr3 | 2,482,442 | 25,397,283 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | PPARG,RAF1,SATB1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligoastrocytoma |
Homo sapiens | ecDNA | ec_hsa_231 | hg19 | chr3:5857534-63488107 | chr3 | 5,857,534 | 63,488,107 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CDC25A,CTNNB1,GNAI2,MST1R,MYD88,PLXNB1,PPARG,RAF1,RASSF1,RHOA,SATB1,USP4,WNT5A | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_232 | hg19 | chr3:77228749-140100869 | chr3 | 77,228,749 | 140,100,869 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | BOC,CBLB,DPPA2,DPPA4,MRAS,RHO,TFG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_233 | hg19 | chr3:96529098-104945051 | chr3 | 96,529,098 | 104,945,051 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | TFG | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_234 | hg19 | chr3:98554714-98555274 | chr3 | 98,554,714 | 98,555,274 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:154210485-154211045,chr7:53437686-57065330,chr7:57477300-57497860,chr7:65160992-65361551,chrX:107240015-107240575. |
Homo sapiens | ecDNA | ec_hsa_235 | hg19 | chr4:129319969-129320470 | chr4 | 129,319,969 | 129,320,470 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr2:6811404-7056157,chr2:14930877-16607368,chr2:24976652-25251094,chr2:25431989-25432491,chr2:44698988-44719489,chr2:70700526-70701027,chr2:88294192-88294693,chr2:117784681-118114666,chr2:136874997-137798352,chr2:145245907-145748806,chr2:153212545-153454678,chr2:170029734-172038781,chr2:206666463-206877029,chrX:133253100-133253601. |
Homo sapiens | ecDNA | ec_hsa_236 | hg19 | chr4:131667813-132069505 | chr4 | 131,667,813 | 132,069,505 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_237 | hg19 | chr4:149373413-180504252 | chr4 | 149,373,413 | 180,504,252 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | ANP32C,GPM6A,SPATA4 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_238 | hg19 | chr4:190921886-190942399 | chr4 | 190,921,886 | 190,942,399 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chrY:6593783-10008597 |
Homo sapiens | ecDNA | ec_hsa_239 | hg19 | chr4:34451476-34472017 | chr4 | 34,451,476 | 34,472,017 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:33008879-33043572,chr7:39893002-39923938,chr7:44005669-45019578,chr7:54034474-63305857,chr7:63635311-63635852,chr7:75287045-75699935,chr7:91591064-94810434,chr20:25748289-25782127,chr20:26035162-26075703. |
Homo sapiens | ecDNA | ec_hsa_240 | hg19 | chr4:39215811-128044181 | chr4 | 39,215,811 | 128,044,181 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AFF1,CXCL1,CXCL2,CXCL3,EIF4E,FGF5,FIP1L1,KIT,LEF1,NAAA,PARM1,PDGFRA,PITX2,PLAC8,PRDM8,SMR3B,TEC,UCHL1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligoastrocytoma |
Homo sapiens | ecDNA | ec_hsa_241 | hg19 | chr4:45952358-75331734 | chr4 | 45,952,358 | 75,331,734 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | CXCL1,CXCL2,CXCL3,FIP1L1,KIT,PDGFRA,SMR3B,TEC | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_242 | hg19 | chr4:52348547-132968957 | chr4 | 52,348,547 | 132,968,957 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | AFF1,CXCL1,CXCL2,CXCL3,EIF4E,FGF5,FIP1L1,KIT,LEF1,NAAA,PARM1,PDGFRA,PITX2,PLAC8,PRDM8,SMR3B | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_243 | hg19 | chr4:52430888-72092469 | chr4 | 52,430,888 | 72,092,469 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | FIP1L1,KIT,PDGFRA,SMR3B | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_244 | hg19 | chr4:52541825-63686801 | chr4 | 52,541,825 | 63,686,801 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_245 | hg19 | chr4:52638005-58799316 | chr4 | 52,638,005 | 58,799,316 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_246 | hg19 | chr4:52929563-56280195 | chr4 | 52,929,563 | 56,280,195 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Recurent Glioblastoma |
Homo sapiens | ecDNA | ec_hsa_247 | hg19 | chr4:52929563-57553596 | chr4 | 52,929,563 | 57,553,596 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_248 | hg19 | chr4:53295126-56281355 | chr4 | 53,295,126 | 56,281,355 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_249 | hg19 | chr4:53878761-55263940 | chr4 | 53,878,761 | 55,263,940 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | FIP1L1,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_250 | hg19 | chr4:54103488-69737176 | chr4 | 54,103,488 | 69,737,176 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_251 | hg19 | chr4:54237924-55762119 | chr4 | 54,237,924 | 55,762,119 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6474);Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_252 | hg19 | chr4:54345291-55107618 | chr4 | 54,345,291 | 55,107,618 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | FIP1L1,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:203177968-204957662,chr4:55629356-55629856,chr6:100688972-100689472,chrX:11692808-11693308,chrX:30639531-30640031. |
Homo sapiens | ecDNA | ec_hsa_253 | hg19 | chr4:54358761-55263940 | chr4 | 54,358,761 | 55,263,940 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | FIP1L1,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chrX:78466337-78466845 |
Homo sapiens | ecDNA | ec_hsa_254 | hg19 | chr4:54490556-55657618 | chr4 | 54,490,556 | 55,657,618 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_255 | hg19 | chr4:54580852-69573081 | chr4 | 54,580,852 | 69,573,081 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | FIP1L1,KIT,PDGFRA | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_256 | hg19 | chr4:55629356-55629856 | chr4 | 55,629,356 | 55,629,856 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:203177968-204957662,chr4:54345291-55107618,chr6:100688972-100689472,chrX:11692808-11693308,chrX:30639531-30640031. |
Homo sapiens | ecDNA | ec_hsa_257 | hg19 | chr4:69317426-70290264 | chr4 | 69,317,426 | 70,290,264 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:GBM |
Homo sapiens | ecDNA | ec_hsa_258 | hg19 | chr4:77827099-106090623 | chr4 | 77,827,099 | 106,090,623 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AFF1,EIF4E,FGF5,PLAC8,PRDM8 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_259 | hg19 | chr4:91554454-92048961 | chr4 | 91,554,454 | 92,048,961 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:39560532-39931064. |
Homo sapiens | ecDNA | ec_hsa_260 | hg19 | chr4:95518229-95518733 | chr4 | 95,518,229 | 95,518,733 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_261 | hg19 | chr4:95518243-95518748 | chr4 | 95,518,243 | 95,518,748 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954. |
Homo sapiens | ecDNA | ec_hsa_262 | hg19 | chr4:95518257-95518749 | chr4 | 95,518,257 | 95,518,749 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_263 | hg19 | chr4:95518271-95518745 | chr4 | 95,518,271 | 95,518,745 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_264 | hg19 | chr4:95518281-95518746 | chr4 | 95,518,281 | 95,518,746 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_265 | hg19 | chr5:57853483-57853983 | chr5 | 57,853,483 | 57,853,983 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:57502937-58562513,chr12:70496679-70497179. |
Homo sapiens | ecDNA | ec_hsa_266 | hg19 | chr5:57853485-57853983 | chr5 | 57,853,485 | 57,853,983 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr7:54793202-55548745,chr8:127398869-132765370,chr8:135119160-136243156,chr12:57399247-58562513,chrX:154748217-154748715. |
Homo sapiens | ecDNA | ec_hsa_267 | hg19 | chr5:57853493-57853983 | chr5 | 57,853,493 | 57,853,983 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr12:57503752-58562513,chr21:23357595-23358085,chrX:116866170-116866660. |
Homo sapiens | ecDNA | ec_hsa_268 | hg19 | chr5:58968187-58988720 | chr5 | 58,968,187 | 58,988,720 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:80250625-80897964. |
Homo sapiens | ecDNA | ec_hsa_269 | hg19 | chr5:75465486-75465990 | chr5 | 75,465,486 | 75,465,990 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957. |
Homo sapiens | ecDNA | ec_hsa_270 | hg19 | chr5:75465495-75465987 | chr5 | 75,465,495 | 75,465,987 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_271 | hg19 | chr5:75465515-75465989 | chr5 | 75,465,515 | 75,465,989 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074. |
Homo sapiens | ecDNA | ec_hsa_272 | hg19 | chr5:75465525-75465990 | chr5 | 75,465,525 | 75,465,990 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |
Homo sapiens | ecDNA | ec_hsa_273 | hg19 | chr5:839964-1421477 | chr5 | 839,964 | 1,421,477 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_274 | hg19 | chr5:904577-45228815 | chr5 | 904,577 | 45,228,815 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CTNND2,FGF10,GOLPH3,IL7R,PRDM9,SKP2,TRIO | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_275 | hg19 | chr6:100688972-100689472 | chr6 | 100,688,972 | 100,689,472 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:203177968-204957662,chr4:54345291-55107618,chr4:55629356-55629856,chrX:11692808-11693308,chrX:30639531-30640031. |
Homo sapiens | ecDNA | ec_hsa_276 | hg19 | chr6:107079743-107100239 | chr6 | 107,079,743 | 107,100,239 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr6:110042384-110043384,chr6:116015514-116016011. |
Homo sapiens | ecDNA | ec_hsa_277 | hg19 | chr6:110042384-110043384 | chr6 | 110,042,384 | 110,043,384 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr6:107079743-107100239,chr6:116015514-116016011. |
Homo sapiens | ecDNA | ec_hsa_278 | hg19 | chr6:116015514-116016011 | chr6 | 116,015,514 | 116,016,011 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr6:107079743-107100239,chr6:110042384-110043384. |
Homo sapiens | ecDNA | ec_hsa_279 | hg19 | chr6:145756652-145757144 | chr6 | 145,756,652 | 145,757,144 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710. |
Homo sapiens | ecDNA | ec_hsa_280 | hg19 | chr6:158951116-158951649 | chr6 | 158,951,116 | 158,951,649 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:53188059-57202187,chr7:57477299-57497832,chr7:65160990-65393245,chr7:101688427-101688960. |
Homo sapiens | ecDNA | ec_hsa_281 | hg19 | chr6:65543182-69393270 | chr6 | 65,543,182 | 69,393,270 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_282 | hg19 | chr7:101688427-101688960 | chr7 | 101,688,427 | 101,688,960 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect | Not Available | CUX1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr6:158951116-158951649,chr7:53188059-57202187,chr7:57477299-57497832,chr7:65160990-65393245, |
Homo sapiens | ecDNA | ec_hsa_283 | hg19 | chr7:105599700-121570400 | chr7 | 105,599,700 | 121,570,400 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CAV1,CBLL1,MET,WNT2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_284 | hg19 | chr7:107598445-121504055 | chr7 | 107,598,445 | 121,504,055 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CAV1,MET,WNT2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_285 | hg19 | chr7:10826575-11146199 | chr7 | 10,826,575 | 11,146,199 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | 1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:94022783-94297472. |
Homo sapiens | ecDNA | ec_hsa_286 | hg19 | chr7:115034520-123218793 | chr7 | 115,034,520 | 123,218,793 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | CAV1,FEZF1,MET,WNT2 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Pathology:Oligoastrocytoma |
Homo sapiens | ecDNA | ec_hsa_287 | hg19 | chr7:115721215-115921714 | chr7 | 115,721,215 | 115,921,714 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116210033-116617296,chr7:118938862-118959361. |
Homo sapiens | ecDNA | ec_hsa_288 | hg19 | chr7:116204659-116608749 | chr7 | 116,204,659 | 116,608,749 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:145542807-146013736,chr7:146062245-146101861,chrY:13984528-25333853. |
Homo sapiens | ecDNA | ec_hsa_289 | hg19 | chr7:116204659-116624503 | chr7 | 116,204,659 | 116,624,503 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:145542807-146013736,chrX:106072756-106073253,chrX:111473619-111474116. |
Homo sapiens | ecDNA | ec_hsa_290 | hg19 | chr7:116204659-116625155 | chr7 | 116,204,659 | 116,625,155 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:145012779-145053275,chr7:145073024-145073521,chr7:145540657-146013736,chrX:84073018-84073515,chrY:18473310-18473807. |
Homo sapiens | ecDNA | ec_hsa_291 | hg19 | chr7:116204663-116608749 | chr7 | 116,204,663 | 116,608,749 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:145542807-146013736. |
Homo sapiens | ecDNA | ec_hsa_292 | hg19 | chr7:116210033-116616296 | chr7 | 116,210,033 | 116,616,296 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:118938873-118959366 |
Homo sapiens | ecDNA | ec_hsa_293 | hg19 | chr7:116210033-116617296 | chr7 | 116,210,033 | 116,617,296 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:115721215-115921714,chr7:118938862-118959361. |
Homo sapiens | ecDNA | ec_hsa_294 | hg19 | chr7:116292907-116527354 | chr7 | 116,292,907 | 116,527,354 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_295 | hg19 | chr7:116292908-116527353 | chr7 | 116,292,908 | 116,527,353 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | MET | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_296 | hg19 | chr7:118938862-118959361 | chr7 | 118,938,862 | 118,959,361 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:115721215-115921714,chr7:116210033-116617296. |
Homo sapiens | ecDNA | ec_hsa_297 | hg19 | chr7:118938873-118959366 | chr7 | 118,938,873 | 118,959,366 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | Not Available | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr7:116210033-116616296 |
Homo sapiens | ecDNA | ec_hsa_298 | hg19 | chr7:1214799-56032601 | chr7 | 1,214,799 | 56,032,601 | Disease | Brain | Glioblastoma | Prediction | Manually scrutinized in the Integrative Genomics Viewer | Not Available | AIMP2,AQP1,CARD11,EGFR,ETV1,GLI3,GNA12,HOTTIP,HOXA1,HOXA9,HOXA-AS2,IKZF1,INTS1,MACC1,RAC1,TWIST1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | Not Available | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_299 | hg19 | chr7:126909994-130680174 | chr7 | 126,909,994 | 130,680,174 | Disease | Brain | Glioblastoma | Prediction | AmpliconArchitect | Not Available | PAX4,SMO | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | Not Available |
Homo sapiens | ecDNA | ec_hsa_300 | hg19 | chr7:13441675-57540679 | chr7 | 13,441,675 | 57,540,679 | Disease | Brain | Glioblastoma | Experiment | FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect) | Not Available | AQP1,EGFR,ETV1,GLI3,HOTTIP,HOXA1,HOXA9,HOXA-AS2,IKZF1,MACC1,TWIST1 | The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878 | WGS | 29686388 | 2018 | May confer to divergent inheritance patterns | This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957. |