Species
stringclasses 2
values | eccDNA type
stringclasses 4
values | eccDNA ID
stringlengths 9
14
| Genome version
stringclasses 2
values | Location
stringlengths 13
25
| Chr
stringclasses 25
values | Start
float64 1
249M
⌀ | End
float64 1.47k
249M
⌀ | Health/Disease
stringclasses 2
values | Tissue/Cell line
stringlengths 3
56
| Disease Name
stringlengths 7
51
| Experiment/Prediction
stringclasses 2
values | Validation Strategies
stringlengths 3
141
| Treatment
stringclasses 11
values | Oncogene
stringlengths 2
237
| Source
stringlengths 13
295
| Library type
stringclasses 9
values | Pubmed ID
stringlengths 7
13
| Public Date
stringclasses 25
values | Function/Characteristic of ecDNA
stringlengths 13
494
| Remarks
stringlengths 2
2.89k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Homo sapiens | eccDNA | ecc_hsa_627976 | hg19 | chr22:28316455-28316778 | chr22 | 28,316,455 | 28,316,778 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627977 | hg19 | chr22:46509351-46509734 | chr22 | 46,509,351 | 46,509,734 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627978 | hg19 | chr22:32017452-32017780 | chr22 | 32,017,452 | 32,017,780 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627979 | hg19 | chr21:17911900-17912753 | chr21 | 17,911,900 | 17,912,753 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627980 | hg19 | chr9:96941073-96941399 | chr9 | 96,941,073 | 96,941,399 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627981 | hg19 | chr9:96938317-96939242 | chr9 | 96,938,317 | 96,939,242 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627982 | hg19 | chrX:53584069-53584485 | chrX | 53,584,069 | 53,584,485 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627983 | hg19 | chrX:53584150-53584362 | chrX | 53,584,150 | 53,584,362 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627984 | hg19 | chr12:62997317-62997849 | chr12 | 62,997,317 | 62,997,849 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627985 | hg19 | chr1:26880803-26881180 | chr1 | 26,880,803 | 26,881,180 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |
Homo sapiens | eccDNA | ecc_hsa_627986 | hg19 | chr1:5624044-5626348 | chr1 | 5,624,044 | 5,626,348 | Disease | Urine | Chronic Kidney Disease | Prediction | Circle-Seq | Not Available | Not Available | The data that support the findings of this study have been deposited into CNGB Sequence Archive (CNSA) of China National GeneBank DataBase (CNGBdb) with accession number CNP0002377 and CNP0002782. | Circle-Seq | 35474296 | 2022 | 1.Ucf-eccDNAs are more frequently derived from intragenetic regions;2.The size distribution pattern of ucfeccDNAs is highly conserved across most individual urine samples;3.The distribution of eccDNAs in the whole genome was not stochastically distributed;4.Simple direct and palindromicrepeats are commonly found at ucf-eccDNA junctions. | Urinary cell-free extrachromosomal circular DNA (ucf-eccDNA) |