monsoon-nlp
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README.md
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# GreenBeing Proteins dataset
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Proteins from UniProtKB (knowledge base), from select food crops and related species. <br/>
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Amino acid sequences use [IUPAC-IUB codes](https://en.wikipedia.org/wiki/FASTA_format#Sequence_representation) where letters A-Z map to amino acids.
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XML source from https://www.uniprot.org/help/downloads <br/>
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CoLab notebook: https://colab.research.google.com/drive/1M6sO0Ws6i5z9VUXIXopiOqo1OkQ7K-1g?usp=sharing
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You should at least pretrain on more than *Oryza sativa*, because its reviewed proteins are probably some of the most common/important.
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Species include inedible wild relatives.<br/>
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Some people have allergic reactions to wheat/gluten, nightshades, maize, and other crops.<br/>
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# GreenBeing Proteins dataset
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Proteins from UniProtKB (knowledge base), from select food crops and related species. <br/>
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Amino acid sequences use [IUPAC-IUB codes](https://en.wikipedia.org/wiki/FASTA_format#Sequence_representation) where letters A-Z map to amino acids. <br/>
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XML source from https://www.uniprot.org/help/downloads <br/>
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CoLab notebook: https://colab.research.google.com/drive/1M6sO0Ws6i5z9VUXIXopiOqo1OkQ7K-1g?usp=sharing
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You should at least pretrain on more than *Oryza sativa*, because its reviewed proteins are probably some of the most common/important.
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Understanding reviewed/unreviewed proteins: https://www.uniprot.org/help/uniprotkb_sections
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The reviewed sequences are often similar to unreviewed sequences from related species and accessions, and are not suitable to test predicting/infilling/completion.
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Species include inedible wild relatives.<br/>
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Some people have allergic reactions to wheat/gluten, nightshades, maize, and other crops.<br/>
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