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{
"cells": [
{
"cell_type": "code",
"execution_count": 25,
"metadata": {},
"outputs": [],
"source": [
"import os\n",
"import json\n",
"train_dir = \"/home/bingxuan/VDA/data/INAT/all_data/train/\"\n",
"test_dir = \"/home/bingxuan/VDA/data/INAT/all_data/test/\"\n",
"working_dir = \"/home/bingxuan/VDA/data/INAT/subset_6\"\n",
"\n",
"configs_path = working_dir + \"/config.json\"\n",
"with open(configs_path, \"r\") as f:\n",
" configs = json.load(f)\n",
" \n",
"paths = configs[\"pairs\"]\n",
"\n",
"# for pair in paths:\n",
"# path_1 = train_dir + pair[\"ground_truth_full_name\"]\n",
"# if not os.path.exists(path_1):\n",
"# print(f\"ERROR: {path_1} does not exist\")\n",
"# print(f\"{path_1}: {len(os.listdir(path_1))}\")\n",
" \n",
"# path_4 = test_dir + pair[\"ground_truth_full_name\"]\n",
"# if not os.path.exists(path_4):\n",
"# print(f\"ERROR: {path_4} does not exist\")\n",
"# print(f\"{path_4}: {len(os.listdir(path_4))}\")\n",
" \n",
"# path_2 = train_dir + pair[\"confusing_class_full_name\"]\n",
"# if not os.path.exists(path_2):\n",
"# print(f\"ERROR: {path_2} does not exist\")\n",
"# print(f\"{path_2}: {len(os.listdir(path_2))}\")\n",
" \n",
"# path_3 = test_dir + pair[\"confusing_class_full_name\"]\n",
"# if not os.path.exists(path_3):\n",
"# print(f\"ERROR: {path_3} does not exist\")\n",
"# print(f\"{path_3}: {len(os.listdir(path_3))}\")\n",
" "
]
},
{
"cell_type": "code",
"execution_count": 26,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor to /home/bingxuan/VDA/data/INAT/subset_6/train/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis to /home/bingxuan/VDA/data/INAT/subset_6/train/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis to /home/bingxuan/VDA/data/INAT/subset_6/val/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor to /home/bingxuan/VDA/data/INAT/subset_6/val/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis to /home/bingxuan/VDA/data/INAT/subset_6/train/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea to /home/bingxuan/VDA/data/INAT/subset_6/train/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea to /home/bingxuan/VDA/data/INAT/subset_6/val/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis to /home/bingxuan/VDA/data/INAT/subset_6/val/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca to /home/bingxuan/VDA/data/INAT/subset_6/train/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca to /home/bingxuan/VDA/data/INAT/subset_6/val/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra to /home/bingxuan/VDA/data/INAT/subset_6/train/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra to /home/bingxuan/VDA/data/INAT/subset_6/val/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos to /home/bingxuan/VDA/data/INAT/subset_6/train/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos to /home/bingxuan/VDA/data/INAT/subset_6/val/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus to /home/bingxuan/VDA/data/INAT/subset_6/train/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami to /home/bingxuan/VDA/data/INAT/subset_6/train/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami to /home/bingxuan/VDA/data/INAT/subset_6/val/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus to /home/bingxuan/VDA/data/INAT/subset_6/val/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula to /home/bingxuan/VDA/data/INAT/subset_6/train/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus to /home/bingxuan/VDA/data/INAT/subset_6/train/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus to /home/bingxuan/VDA/data/INAT/subset_6/val/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula to /home/bingxuan/VDA/data/INAT/subset_6/val/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata to /home/bingxuan/VDA/data/INAT/subset_6/train/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata to /home/bingxuan/VDA/data/INAT/subset_6/val/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis to /home/bingxuan/VDA/data/INAT/subset_6/train/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis to /home/bingxuan/VDA/data/INAT/subset_6/val/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus to /home/bingxuan/VDA/data/INAT/subset_6/train/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis to /home/bingxuan/VDA/data/INAT/subset_6/train/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis to /home/bingxuan/VDA/data/INAT/subset_6/val/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus to /home/bingxuan/VDA/data/INAT/subset_6/val/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis to /home/bingxuan/VDA/data/INAT/subset_6/train/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis to /home/bingxuan/VDA/data/INAT/subset_6/val/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes to /home/bingxuan/VDA/data/INAT/subset_6/train/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis to /home/bingxuan/VDA/data/INAT/subset_6/train/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis to /home/bingxuan/VDA/data/INAT/subset_6/val/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes to /home/bingxuan/VDA/data/INAT/subset_6/val/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum to /home/bingxuan/VDA/data/INAT/subset_6/train/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus to /home/bingxuan/VDA/data/INAT/subset_6/train/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus to /home/bingxuan/VDA/data/INAT/subset_6/val/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum to /home/bingxuan/VDA/data/INAT/subset_6/val/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus to /home/bingxuan/VDA/data/INAT/subset_6/train/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi to /home/bingxuan/VDA/data/INAT/subset_6/train/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi to /home/bingxuan/VDA/data/INAT/subset_6/val/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus to /home/bingxuan/VDA/data/INAT/subset_6/val/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina to /home/bingxuan/VDA/data/INAT/subset_6/train/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti to /home/bingxuan/VDA/data/INAT/subset_6/train/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti to /home/bingxuan/VDA/data/INAT/subset_6/val/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina to /home/bingxuan/VDA/data/INAT/subset_6/val/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu to /home/bingxuan/VDA/data/INAT/subset_6/train/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/train/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus to /home/bingxuan/VDA/data/INAT/subset_6/train/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus to /home/bingxuan/VDA/data/INAT/subset_6/val/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus\n",
"copied /home/bingxuan/VDA/data/INAT/all_data/test/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu to /home/bingxuan/VDA/data/INAT/subset_6/val/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu\n"
]
}
],
"source": [
"# cp train and test data to working dir\n",
"import shutil\n",
"\n",
"for pair in paths:\n",
" path_1 = train_dir + pair[\"ground_truth_full_name\"]\n",
" path_2 = train_dir + pair[\"confusing_class_full_name\"]\n",
" path_3 = test_dir + pair[\"confusing_class_full_name\"]\n",
" path_4 = test_dir + pair[\"ground_truth_full_name\"]\n",
" \n",
" if not os.path.exists(working_dir + '/train/' + pair['ground_truth_full_name']):\n",
" shutil.copytree(path_1, working_dir + '/train/' + pair['ground_truth_full_name'])\n",
" print(f\"copied {path_1} to {working_dir + '/train/' + pair['ground_truth_full_name']}\")\n",
" if not os.path.exists(working_dir + '/train/' + pair['confusing_class_full_name']):\n",
" shutil.copytree(path_2, working_dir + '/train/' + pair['confusing_class_full_name'])\n",
" print(f\"copied {path_2} to {working_dir + '/train/' + pair['confusing_class_full_name']}\")\n",
" if not os.path.exists(working_dir + '/val/' + pair['confusing_class_full_name']): \n",
" shutil.copytree(path_3, working_dir + '/val/' + pair['confusing_class_full_name'])\n",
" print(f\"copied {path_3} to {working_dir + '/val/' + pair['confusing_class_full_name']}\")\n",
" if not os.path.exists(working_dir + '/val/' + pair['ground_truth_full_name']):\n",
" shutil.copytree(path_4, working_dir + '/val/' + pair['ground_truth_full_name'])\n",
" print(f\"copied {path_4} to {working_dir + '/val/' + pair['ground_truth_full_name']}\")"
]
},
{
"cell_type": "code",
"execution_count": 27,
"metadata": {},
"outputs": [],
"source": [
"# import random\n",
"# import shutil\n",
"\n",
"# train_num_imgs = 70\n",
"# val_num_imgs = 30\n",
"\n",
"# for pair in paths:\n",
"# path_1 = home_dir + pair[\"ground_truth_full_name\"]\n",
"# os.makedirs(working_dir + \"/train\" + pair[\"ground_truth_full_name\"], exist_ok=True)\n",
"# os.makedirs(working_dir + \"/val\" + pair[\"ground_truth_full_name\"], exist_ok=True)\n",
"# images = os.listdir(path_1)\n",
"# random.shuffle(images)\n",
"# for img in images[:train_num_imgs]:\n",
"# shutil.copy(path_1 + \"/\" + img, working_dir + \"/train\" + pair[\"ground_truth_full_name\"] + \"/\" + img)\n",
"# for img in images[train_num_imgs:train_num_imgs+val_num_imgs]:\n",
"# shutil.copy(path_1 + \"/\" + img, working_dir + \"/val\" + pair[\"ground_truth_full_name\"] + \"/\" + img)\n",
"\n",
"# path_2 = home_dir + pair[\"confusing_class_full_name\"]\n",
"# os.makedirs(working_dir + \"/train\" + pair[\"confusing_class_full_name\"], exist_ok=True)\n",
"# os.makedirs(working_dir + \"/val\" + pair[\"confusing_class_full_name\"], exist_ok=True)\n",
"# images = os.listdir(path_2)\n",
"# random.shuffle(images)\n",
"# for img in images[:train_num_imgs]:\n",
"# shutil.copy(path_2 + \"/\" + img, working_dir + \"/train\" + pair[\"confusing_class_full_name\"] + \"/\" + img)\n",
"# for img in images[train_num_imgs:train_num_imgs+val_num_imgs]:\n",
"# shutil.copy(path_2 + \"/\" + img, working_dir + \"/val\" + pair[\"confusing_class_full_name\"] + \"/\" + img)"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "visual_data_aug",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
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}
},
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}
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