{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {},
   "outputs": [],
   "source": [
    "import os\n",
    "import json\n",
    "train_dir = \"/home/bingxuan/VDA/data/INAT/all_data/train/\"\n",
    "test_dir = \"/home/bingxuan/VDA/data/INAT/all_data/test/\"\n",
    "working_dir = \"/home/bingxuan/VDA/data/INAT/subset_6\"\n",
    "\n",
    "configs_path = working_dir + \"/config.json\"\n",
    "with open(configs_path, \"r\") as f:\n",
    "    configs = json.load(f)\n",
    "  \n",
    "paths = configs[\"pairs\"]\n",
    "\n",
    "# for pair in paths:\n",
    "#     path_1 = train_dir + pair[\"ground_truth_full_name\"]\n",
    "#     if not os.path.exists(path_1):\n",
    "#         print(f\"ERROR: {path_1} does not exist\")\n",
    "#     print(f\"{path_1}: {len(os.listdir(path_1))}\")\n",
    "    \n",
    "#     path_4 = test_dir + pair[\"ground_truth_full_name\"]\n",
    "#     if not os.path.exists(path_4):\n",
    "#         print(f\"ERROR: {path_4} does not exist\")\n",
    "#     print(f\"{path_4}: {len(os.listdir(path_4))}\")\n",
    "    \n",
    "#     path_2 = train_dir + pair[\"confusing_class_full_name\"]\n",
    "#     if not os.path.exists(path_2):\n",
    "#         print(f\"ERROR: {path_2} does not exist\")\n",
    "#     print(f\"{path_2}: {len(os.listdir(path_2))}\")\n",
    "        \n",
    "#     path_3 = test_dir + pair[\"confusing_class_full_name\"]\n",
    "#     if not os.path.exists(path_3):\n",
    "#         print(f\"ERROR: {path_3} does not exist\")\n",
    "#     print(f\"{path_3}: {len(os.listdir(path_3))}\")\n",
    "    "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor to /home/bingxuan/VDA/data/INAT/subset_6/train/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis to /home/bingxuan/VDA/data/INAT/subset_6/train/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis to /home/bingxuan/VDA/data/INAT/subset_6/val/04455_Animalia_Chordata_Aves_Piciformes_Picidae_Melanerpes_lewis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor to /home/bingxuan/VDA/data/INAT/subset_6/val/04440_Animalia_Chordata_Aves_Piciformes_Picidae_Dryobates_minor\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis to /home/bingxuan/VDA/data/INAT/subset_6/train/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea to /home/bingxuan/VDA/data/INAT/subset_6/train/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea to /home/bingxuan/VDA/data/INAT/subset_6/val/04373_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_caerulea\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis to /home/bingxuan/VDA/data/INAT/subset_6/val/04243_Animalia_Chordata_Aves_Passeriformes_Thraupidae_Tersina_viridis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca to /home/bingxuan/VDA/data/INAT/subset_6/train/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca to /home/bingxuan/VDA/data/INAT/subset_6/val/04074_Animalia_Chordata_Aves_Passeriformes_Parulidae_Setophaga_fusca\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra to /home/bingxuan/VDA/data/INAT/subset_6/train/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra to /home/bingxuan/VDA/data/INAT/subset_6/val/04377_Animalia_Chordata_Aves_Pelecaniformes_Ardeidae_Egretta_sacra\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos to /home/bingxuan/VDA/data/INAT/subset_6/train/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos to /home/bingxuan/VDA/data/INAT/subset_6/val/04570_Animalia_Chordata_Aves_Suliformes_Phalacrocoracidae_Microcarbo_melanoleucos\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus to /home/bingxuan/VDA/data/INAT/subset_6/train/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami to /home/bingxuan/VDA/data/INAT/subset_6/train/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami to /home/bingxuan/VDA/data/INAT/subset_6/val/04836_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_merriami\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus to /home/bingxuan/VDA/data/INAT/subset_6/val/04837_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Neotamias_minimus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula to /home/bingxuan/VDA/data/INAT/subset_6/train/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus to /home/bingxuan/VDA/data/INAT/subset_6/train/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus to /home/bingxuan/VDA/data/INAT/subset_6/val/04716_Animalia_Chordata_Mammalia_Carnivora_Procyonidae_Bassariscus_astutus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula to /home/bingxuan/VDA/data/INAT/subset_6/val/04741_Animalia_Chordata_Mammalia_Diprotodontia_Phalangeridae_Trichosurus_vulpecula\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata to /home/bingxuan/VDA/data/INAT/subset_6/train/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata to /home/bingxuan/VDA/data/INAT/subset_6/val/04780_Animalia_Chordata_Mammalia_Primates_Cebidae_Callithrix_penicillata\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis to /home/bingxuan/VDA/data/INAT/subset_6/train/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis to /home/bingxuan/VDA/data/INAT/subset_6/val/04821_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Callospermophilus_lateralis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus to /home/bingxuan/VDA/data/INAT/subset_6/train/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis to /home/bingxuan/VDA/data/INAT/subset_6/train/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis to /home/bingxuan/VDA/data/INAT/subset_6/val/04811_Animalia_Chordata_Mammalia_Rodentia_Hystricidae_Hystrix_africaeaustralis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus to /home/bingxuan/VDA/data/INAT/subset_6/val/04746_Animalia_Chordata_Mammalia_Eulipotyphla_Erinaceidae_Erinaceus_roumanicus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis to /home/bingxuan/VDA/data/INAT/subset_6/train/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis to /home/bingxuan/VDA/data/INAT/subset_6/val/04845_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Sciurus_granatensis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes to /home/bingxuan/VDA/data/INAT/subset_6/train/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis to /home/bingxuan/VDA/data/INAT/subset_6/train/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis to /home/bingxuan/VDA/data/INAT/subset_6/val/04794_Animalia_Chordata_Mammalia_Rodentia_Castoridae_Castor_canadensis\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes to /home/bingxuan/VDA/data/INAT/subset_6/val/04802_Animalia_Chordata_Mammalia_Rodentia_Cricetidae_Neotoma_fuscipes\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum to /home/bingxuan/VDA/data/INAT/subset_6/train/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus to /home/bingxuan/VDA/data/INAT/subset_6/train/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus to /home/bingxuan/VDA/data/INAT/subset_6/val/04857_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Xerospermophilus_tereticaudus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum to /home/bingxuan/VDA/data/INAT/subset_6/val/04825_Animalia_Chordata_Mammalia_Rodentia_Sciuridae_Funambulus_palmarum\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus to /home/bingxuan/VDA/data/INAT/subset_6/train/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi to /home/bingxuan/VDA/data/INAT/subset_6/train/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi to /home/bingxuan/VDA/data/INAT/subset_6/val/04779_Animalia_Chordata_Mammalia_Primates_Atelidae_Ateles_geoffroyi\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus to /home/bingxuan/VDA/data/INAT/subset_6/val/04791_Animalia_Chordata_Mammalia_Primates_Cercopithecidae_Trachypithecus_obscurus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina to /home/bingxuan/VDA/data/INAT/subset_6/train/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti to /home/bingxuan/VDA/data/INAT/subset_6/train/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti to /home/bingxuan/VDA/data/INAT/subset_6/val/04702_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Pekania_pennanti\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina to /home/bingxuan/VDA/data/INAT/subset_6/val/04696_Animalia_Chordata_Mammalia_Carnivora_Mustelidae_Martes_foina\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu to /home/bingxuan/VDA/data/INAT/subset_6/train/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/train/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus to /home/bingxuan/VDA/data/INAT/subset_6/train/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus to /home/bingxuan/VDA/data/INAT/subset_6/val/04731_Animalia_Chordata_Mammalia_Cingulata_Dasypodidae_Dasypus_novemcinctus\n",
      "copied /home/bingxuan/VDA/data/INAT/all_data/test/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu to /home/bingxuan/VDA/data/INAT/subset_6/val/04667_Animalia_Chordata_Mammalia_Artiodactyla_Tayassuidae_Pecari_tajacu\n"
     ]
    }
   ],
   "source": [
    "# cp train and test data to working dir\n",
    "import shutil\n",
    "\n",
    "for pair in paths:\n",
    "    path_1 = train_dir + pair[\"ground_truth_full_name\"]\n",
    "    path_2 = train_dir + pair[\"confusing_class_full_name\"]\n",
    "    path_3 = test_dir + pair[\"confusing_class_full_name\"]\n",
    "    path_4 = test_dir + pair[\"ground_truth_full_name\"]\n",
    "    \n",
    "    if not os.path.exists(working_dir + '/train/' + pair['ground_truth_full_name']):\n",
    "        shutil.copytree(path_1, working_dir + '/train/' + pair['ground_truth_full_name'])\n",
    "        print(f\"copied {path_1} to {working_dir + '/train/' + pair['ground_truth_full_name']}\")\n",
    "    if not os.path.exists(working_dir + '/train/' + pair['confusing_class_full_name']):\n",
    "        shutil.copytree(path_2, working_dir + '/train/' + pair['confusing_class_full_name'])\n",
    "        print(f\"copied {path_2} to {working_dir + '/train/' + pair['confusing_class_full_name']}\")\n",
    "    if not os.path.exists(working_dir + '/val/' + pair['confusing_class_full_name']): \n",
    "        shutil.copytree(path_3, working_dir + '/val/' + pair['confusing_class_full_name'])\n",
    "        print(f\"copied {path_3} to {working_dir + '/val/' + pair['confusing_class_full_name']}\")\n",
    "    if not os.path.exists(working_dir + '/val/' + pair['ground_truth_full_name']):\n",
    "        shutil.copytree(path_4, working_dir + '/val/' + pair['ground_truth_full_name'])\n",
    "        print(f\"copied {path_4} to {working_dir + '/val/' + pair['ground_truth_full_name']}\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {},
   "outputs": [],
   "source": [
    "# import random\n",
    "# import shutil\n",
    "\n",
    "# train_num_imgs = 70\n",
    "# val_num_imgs = 30\n",
    "\n",
    "# for pair in paths:\n",
    "#   path_1 = home_dir + pair[\"ground_truth_full_name\"]\n",
    "#   os.makedirs(working_dir + \"/train\" + pair[\"ground_truth_full_name\"], exist_ok=True)\n",
    "#   os.makedirs(working_dir + \"/val\" + pair[\"ground_truth_full_name\"], exist_ok=True)\n",
    "#   images = os.listdir(path_1)\n",
    "#   random.shuffle(images)\n",
    "#   for img in images[:train_num_imgs]:\n",
    "#     shutil.copy(path_1 + \"/\" + img, working_dir + \"/train\" + pair[\"ground_truth_full_name\"] + \"/\" + img)\n",
    "#   for img in images[train_num_imgs:train_num_imgs+val_num_imgs]:\n",
    "#     shutil.copy(path_1 + \"/\" + img, working_dir + \"/val\" + pair[\"ground_truth_full_name\"] + \"/\" + img)\n",
    "\n",
    "#   path_2 = home_dir + pair[\"confusing_class_full_name\"]\n",
    "#   os.makedirs(working_dir + \"/train\" + pair[\"confusing_class_full_name\"], exist_ok=True)\n",
    "#   os.makedirs(working_dir + \"/val\" + pair[\"confusing_class_full_name\"], exist_ok=True)\n",
    "#   images = os.listdir(path_2)\n",
    "#   random.shuffle(images)\n",
    "#   for img in images[:train_num_imgs]:\n",
    "#     shutil.copy(path_2 + \"/\" + img, working_dir + \"/train\" + pair[\"confusing_class_full_name\"] + \"/\" + img)\n",
    "#   for img in images[train_num_imgs:train_num_imgs+val_num_imgs]:\n",
    "#     shutil.copy(path_2 + \"/\" + img, working_dir + \"/val\" + pair[\"confusing_class_full_name\"] + \"/\" + img)"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "visual_data_aug",
   "language": "python",
   "name": "python3"
  },
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