config.json

{
  "_name_or_path": "prot2text_medium",
  "prot2text_version": "1.0",
  "architectures": [
    "Prot2TextModel"
  ],
  "auto_map": {
    "AutoConfig": "configuration_prot2text.Prot2TextConfig",
    "AutoModel": "modeling_prot2text.Prot2TextModel",
    "AutoModelForCausalLM": "modeling_prot2text.Prot2TextModel"
  },
  "model_type": "prot2text",
  "bos_token_id": 50257,
  "cross_esm_graph": true,
  "decoder_start_token_id": 50257,
  "early_stopping": true,
  "eos_token_id": 50258,
  "esm": true,
  "esm_config": {
    "_name_or_path": "facebook/esm2_t30_150M_UR50D",
    "add_cross_attention": false,
    "architectures": [
      "EsmModel"
    ],
    "attention_probs_dropout_prob": 0.0,
    "bad_words_ids": null,
    "begin_suppress_tokens": null,
    "bos_token_id": null,
    "chunk_size_feed_forward": 0,
    "classifier_dropout": null,
    "cross_attention_hidden_size": null,
    "decoder_start_token_id": null,
    "diversity_penalty": 0.0,
    "do_sample": false,
    "early_stopping": false,
    "emb_layer_norm_before": false,
    "encoder_no_repeat_ngram_size": 0,
    "eos_token_id": null,
    "esmfold_config": null,
    "exponential_decay_length_penalty": null,
    "finetuning_task": null,
    "forced_bos_token_id": null,
    "forced_eos_token_id": null,
    "hidden_act": "gelu",
    "hidden_dropout_prob": 0.0,
    "hidden_size": 640,
    "id2label": {
      "0": "LABEL_0",
      "1": "LABEL_1"
    },
    "initializer_range": 0.02,
    "intermediate_size": 2560,
    "is_decoder": false,
    "is_encoder_decoder": false,
    "is_folding_model": false,
    "label2id": {
      "LABEL_0": 0,
      "LABEL_1": 1
    },
    "layer_norm_eps": 1e-05,
    "length_penalty": 1.0,
    "mask_token_id": 32,
    "max_length": 20,
    "max_position_embeddings": 1026,
    "min_length": 0,
    "model_type": "esm",
    "no_repeat_ngram_size": 0,
    "num_attention_heads": 20,
    "num_beam_groups": 1,
    "num_beams": 1,
    "num_hidden_layers": 30,
    "num_return_sequences": 1,
    "output_attentions": false,
    "output_hidden_states": false,
    "output_scores": false,
    "pad_token_id": 1,
    "position_embedding_type": "rotary",
    "prefix": null,
    "problem_type": null,
    "pruned_heads": {},
    "remove_invalid_values": false,
    "repetition_penalty": 1.0,
    "return_dict": true,
    "return_dict_in_generate": false,
    "sep_token_id": null,
    "suppress_tokens": null,
    "task_specific_params": null,
    "temperature": 1.0,
    "tf_legacy_loss": false,
    "tie_encoder_decoder": false,
    "tie_word_embeddings": true,
    "token_dropout": true,
    "tokenizer_class": null,
    "top_k": 50,
    "top_p": 1.0,
    "torch_dtype": "float32",
    "torchscript": false,
    "transformers_version": "4.30.1",
    "typical_p": 1.0,
    "use_bfloat16": false,
    "use_cache": true,
    "vocab_list": null,
    "vocab_size": 33
  },
  "esm_model_name": "facebook/esm2_t30_150M_UR50D",
  "gpt_config": {
    "_name_or_path": "gpt2",
    "prot2text_version": "1.0",
    "activation_function": "gelu_new",
    "add_cross_attention": true,
    "architectures": [
      "GPT2Model"
    ],
    "attn_pdrop": 0.1,
    "bad_words_ids": null,
    "begin_suppress_tokens": null,
    "bos_token_id": 50257,
    "chunk_size_feed_forward": 0,
    "cross_attention_hidden_size": null,
    "decoder_start_token_id": 50257,
    "diversity_penalty": 0.0,
    "do_sample": false,
    "early_stopping": false,
    "embd_pdrop": 0.1,
    "encoder_no_repeat_ngram_size": 0,
    "eos_token_id": 50258,
    "exponential_decay_length_penalty": null,
    "finetuning_task": null,
    "forced_bos_token_id": null,
    "forced_eos_token_id": null,
    "id2label": {
      "0": "LABEL_0",
      "1": "LABEL_1"
    },
    "initializer_range": 0.02,
    "is_decoder": false,
    "is_encoder_decoder": true,
    "label2id": {
      "LABEL_0": 0,
      "LABEL_1": 1
    },
    "layer_norm_epsilon": 1e-05,
    "length_penalty": 1.0,
    "max_length": 256,
    "max_new_tokens": 256,
    "min_length": 0,
    "model_type": "gpt2",
    "n_ctx": 1024,
    "n_embd": 768,
    "n_head": 12,
    "n_inner": null,
    "n_layer": 12,
    "n_positions": 1024,
    "no_repeat_ngram_size": 0,
    "num_beam_groups": 1,
    "num_beams": 1,
    "num_return_sequences": 1,
    "output_attentions": false,
    "output_hidden_states": false,
    "output_scores": false,
    "pad_token_id": 50256,
    "prefix": null,
    "problem_type": null,
    "pruned_heads": {},
    "remove_invalid_values": false,
    "reorder_and_upcast_attn": false,
    "repetition_penalty": 1.0,
    "resid_pdrop": 0.1,
    "return_dict": true,
    "return_dict_in_generate": false,
    "scale_attn_by_inverse_layer_idx": false,
    "scale_attn_weights": true,
    "sep_token_id": null,
    "summary_activation": null,
    "summary_first_dropout": 0.1,
    "summary_proj_to_labels": true,
    "summary_type": "cls_index",
    "summary_use_proj": true,
    "suppress_tokens": null,
    "task_specific_params": {
      "text-generation": {
        "do_sample": true,
        "max_length": 50
      }
    },
    "temperature": 1.0,
    "tf_legacy_loss": false,
    "tie_encoder_decoder": false,
    "tie_word_embeddings": true,
    "tokenizer_class": null,
    "top_k": 50,
    "top_p": 1.0,
    "torch_dtype": "float32",
    "torchscript": false,
    "transformers_version": "4.30.1",
    "typical_p": 1.0,
    "use_bfloat16": false,
    "use_cache": true,
    "vocab_size": 50259
  },
  "gpt_model_name": "../data/gpt2/",
  "length_penalty": 2.0,
  "max_new_tokens": 256,
  "no_repeat_ngram_size": 3,
  "pad_token_id": 50256,
  "rgcn": true,
  "rgcn_input_dim": 67,
  "rgcn_n_layers": 6,
  "torch_dtype": "float32",
  "transformers_version": "4.30.1"
}