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defined_as: kipoi.model.KerasModel |
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args: |
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arch: |
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url: https://zenodo.org/record/5502060/files/DeepSTARR.model.json?download=1 |
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md5: 9b796f79441e53dc75dd79b911fff872 |
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weights: |
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url: https://zenodo.org/record/5502060/files/DeepSTARR.model.h5?download=1 |
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md5: 7e53a9351b2520a4713a5ffdb5f1566c |
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default_dataloader: |
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defined_as: kipoiseq.dataloaders.SeqIntervalDl |
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default_args: |
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auto_resize_len: 249 |
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alphabet_axis: 1 |
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dummy_axis: 2 |
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alphabet: "ACGT" |
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ignore_targets: False |
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info: |
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authors: |
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- name: Bernardo P. de Almeida |
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github: bernardo-de-almeida |
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email: bernardo.almeida94@gmail.com |
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doc: Model predicting the activities of developmental and housekeeping enhancers in Drosophila S2 cells |
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cite_as: https://doi.org/10.1101/2021.10.05.463203 |
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trained_on: Developmental and housekeeping quantitative enhancer activity. Held-out second half of chromosome 2R. |
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license: MIT |
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dependencies: |
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conda: |
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- python=3.7 |
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- h5py=3.6.0 |
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- pip=21.2.2 |
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pip: |
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- keras==2.7.0 |
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- tensorflow==2.7.0 |
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schema: |
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inputs: |
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shape: (249,4,1) |
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doc: DNA sequence |
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targets: |
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shape: (2,) |
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doc: Developmental and housekeeping enhancer activity |
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