Put BibTex in code block and fixed latex renders.

README.md

@@ -167,7 +167,7 @@ These arguments are meant to simplify adding `gen_metadata.py` to a workflow tha
 
 
 ### Running with Singularity
-A Docker container is automatically built for each **drexel_metadata** release. This container has the requirements installed and includes the model file.
+A Docker container is automatically built for each **drexel\_metadata** release. This container has the requirements installed and includes the model file.
 To run the singularity container for a specific version follow this pattern:
 ```
 singularity run docker://ghcr.io/hdr-bgnn/drexel_metadata:<release> gen_metadata.py ...
@@ -291,7 +291,7 @@ J. Pepper, J. Greenberg, Y. Bakiş, X. Wang, H. Bart and D. Breen, "Automatic Me
 
 
 **BibTeX:**
-
+```
 @article{KPB2022,
   title    = "Computational metadata generation methods for biological specimen image collections",
   author   = "Karnani, Kevin and Pepper, Joel and Bak{\i}{\c s}, Yasin and Wang, Xiaojun and Bart, Jr, Henry and
@@ -301,7 +301,7 @@ J. Pepper, J. Greenberg, Y. Bakiş, X. Wang, H. Bart and D. Breen, "Automatic Me
   url      = "https://doi.org/10.1007/s00799-022-00342-1",
   doi      = "10.1007/s00799-022-00342-1"
 }
-
+```
 <!--
 **APA:**
 
@@ -318,7 +318,7 @@ J. Pepper, J. Greenberg, Y. Bakiş, X. Wang, H. Bart and D. Breen, "Automatic Me
 | fish\_count             | Overall Image            | Integer           | The quantity of fish present.                                                                                                                               |
 | has\_ruler              | Overall Image            | Boolean           | Whether a ruler was found in the image.                                                                                                                     |
 | ruler\_bbox             | Overall Image            | 4 Tuple           | The bounding box of the ruler (if found).                                                                                                                   |
-| scale*                  | Overall Image            | Float             | The scale of the image in $\frac{\mathrm{pixels}}{\mathrm{cm}}$.                                                                                          |
+| scale*                  | Overall Image            | Float             | The scale of the image in \\\frac{\mathrm{pixels}}{\mathrm{cm}}\\.                                                                                          |
 | bbox                    | Per Fish                 | 4 Tuple           | The top left and bottom right coordinates of the bounding box for a fish.                                                                                   |
 | background.mean         | Per Fish                 | Float             | The mean intensity of the background within a given fish's bounding box.                                                                                    |
 | background.std          | Per Fish                 | Float             | The standard deviation of the background within a given fish's bounding box.                                                                                |
@@ -335,12 +335,12 @@ J. Pepper, J. Greenberg, Y. Bakiş, X. Wang, H. Bart and D. Breen, "Automatic Me
 | has\_eye                | Per Fish                 | Boolean           | Whether an eye was found for a given fish.                                                                                                                  |
 | eye\_center             | Per Fish                 | 2 Tuple           | The centroid of a fish's eye.                                                                                                                               |
 | side*                   | Per Fish                 | String            | The side (i.e. 'left' or 'right') of the fish that is facing the camera (dependent on finding its eye).                                  |
-| area                 | Per Fish                 | Float             | Area of fish in $\mathrm{cm^2}$.                                                                                               |
+| area                 | Per Fish                 | Float             | Area of fish in \\\mathrm{cm^2}\\.                                                                                               |
 | cont\_length         | Per Fish                 | Float             | The longest contiguous length of the fish in centimeters.                                                                        |
 | cont\_width          | Per Fish                 | Float             | The longest contiguous width of the fish in centimeters.                                                                         |
-| convex\_area         | Per Fish                 | Float             | Area of convex hull image (smallest convex polygon that encloses the fish) in $\mathrm{cm^2}$.                                 |
+| convex\_area         | Per Fish                 | Float             | Area of convex hull image (smallest convex polygon that encloses the fish) in \\\mathrm{cm^2}\\.                                 |
 | eccentricity         | Per Fish                 | Float             | Ratio of the focal distance over the major axis length of the ellipse that has the same second-moments as the fish.              |
-| extent               | Per Fish                 | Float             | Ratio of pixels of fish to pixels in the total bounding box. Computed as $\frac{\mathrm{area}}{\mathrm{rows} * \mathrm{cols}}$ |
+| extent               | Per Fish                 | Float             | Ratio of pixels of fish to pixels in the total bounding box. Computed as \\\frac{\mathrm{area}}{\mathrm{rows} * \mathrm{cols}}\\ |
 | feret\_diameter\_max | Per Fish                 | Float             | The longest distance between points around the fish’s convex hull contour.                                                       |
 | kurtosis             | Per Fish                 | 2D Vector         | The sharpness of the peaks of the frequency-distribution curve of mask pixel coordinates.                                        |
 | major\_axis\_length  | Per Fish                 | Float             | The length of the major axis of the ellipse that has the same normalized second central moments as the fish.                     |