James
commited on
Commit
•
b0a2dd2
1
Parent(s):
ed79c89
Added model
Browse files
breast-er-v1/keras_metadata.pb
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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+
oid sha256:dde4851f7511b9dcf9c4e7251bb09d77d11497ca1525edc668ff569498750fc6
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+
size 555078
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breast-er-v1/params.json
ADDED
@@ -0,0 +1,90 @@
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{
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"slideflow_version": "1.3.1-dev1",
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"project": "MyProject",
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"backend": "tensorflow",
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"git_commit": "ea69f0708cad0a3bca3607244cd1baadd43ea498",
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"model_name": "ER_Status_By_IHC-HP0",
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"full_model_name": "ER_Status_By_IHC-HP0",
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"stage": "training",
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"img_format": "png",
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"tile_px": 299,
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"tile_um": 302,
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"max_tiles": 0,
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"min_tiles": 0,
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"model_type": "categorical",
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"outcomes": [
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"ER_Status_By_IHC"
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],
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"input_features": null,
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"input_feature_sizes": null,
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"input_feature_labels": null,
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"outcome_labels": {
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"0": "negative",
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"1": "positive"
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},
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"dataset_config": "/mnt/data/PROJECTS/TCGA_BRCA_GAN/datasets.json",
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"sources": [
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"TCGA_BRCA"
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],
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"annotations": "/mnt/data/PROJECTS/TCGA_BRCA_GAN/tcga_brca_complete.csv",
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"validation_strategy": "none",
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"validation_fraction": null,
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"validation_k_fold": 3,
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"k_fold_i": null,
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"filters": {
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"ER_Status_By_IHC": [
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"positive",
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"negative"
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]
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},
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"hp": {
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"augment": "xyrjb",
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"batch_size": 128,
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"drop_images": false,
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"dropout": 0.1,
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"early_stop": true,
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"early_stop_method": "accuracy",
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"early_stop_patience": 0,
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"epochs": [
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1
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],
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"hidden_layer_width": 1024,
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"hidden_layers": 2,
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"include_top": false,
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"l1": 0.0,
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"l1_dense": 0.0,
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"l2": 0.0,
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"l2_dense": 0.0,
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"learning_rate": 0.0001,
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"learning_rate_decay": 0.98,
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"learning_rate_decay_steps": 512,
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"loss": "sparse_categorical_crossentropy",
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"manual_early_stop_batch": null,
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"manual_early_stop_epoch": null,
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"model": "xception",
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"normalizer": "reinhard_fast",
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"normalizer_source": null,
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"optimizer": "Adam",
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"pooling": "avg",
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"tile_px": 299,
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"tile_um": 302,
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"toplayer_epochs": 0,
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"trainable_layers": 0,
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"training_balance": "category",
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"uq": false,
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"validation_balance": "none"
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},
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"training_kwargs": {},
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"norm_fit": {
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"target_means": [
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63.71194076538086,
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20.716245651245117,
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-12.290745735168457
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],
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"target_stds": [
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14.527810096740723,
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8.34400463104248,
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8.300264358520508
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]
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}
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}
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breast-er-v1/saved_model.pb
ADDED
@@ -0,0 +1,3 @@
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1 |
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version https://git-lfs.github.com/spec/v1
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2 |
+
oid sha256:ccfeebd0624d0bfbbb6711c06f0491ec00051147965899b0d8f2cb55e278935a
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size 3740598
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breast-er-v1/slide_manifest.csv
ADDED
@@ -0,0 +1,1049 @@
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