jsunn-y
commited on
Commit
•
74a1697
1
Parent(s):
233fa9c
added models to be included
Browse files- {ec-onehot-swissprot/ba11000 → ec+tax-swissprot/9B}/config.json +0 -0
- ec+tax-swissprot/9B/model.safetensors +3 -0
- ec-creep-swissprot/1.5B/config.json +69 -0
- ec-creep-swissprot/1.5B/model.safetensors +3 -0
- ec-drfp-swissprot/1.5B/config.json +69 -0
- ec-drfp-swissprot/1.5B/model.safetensors +3 -0
- ec-onehot-swissprot/1.5B/config.json +71 -0
- ec-onehot-swissprot/{ba11000 → 1.5B}/model.safetensors +0 -0
- ec-onehot-swissprot/ba11000/generation_config.json +0 -7
- ec-onehot-uniref/9B/config.json +69 -0
- ec-onehot-uniref/9B/model.safetensors +3 -0
- tax-swissprot/9B/config.json +69 -0
- tax-swissprot/9B/model.safetensors +3 -0
{ec-onehot-swissprot/ba11000 → ec+tax-swissprot/9B}/config.json
RENAMED
File without changes
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ec+tax-swissprot/9B/model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:9c08319bd327dbe873006e6708b011c0b58865516f14c5bbb2aac23dd1495b5d
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size 1900958662
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ec-creep-swissprot/1.5B/config.json
ADDED
@@ -0,0 +1,69 @@
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{
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"activation_function": "gelu_new",
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"adapter_c_hidden": 16,
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"adapter_c_s": 256,
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"adapter_dropout": 0.1,
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"adapter_input_dim": 2048,
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"adapter_nlayers": 4,
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"adapter_projection_nlayers": 2,
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"adapter_shared_projection": true,
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"adapter_summation": false,
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"adapter_weight_init": 1e-05,
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"architectures": [
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"ProgenConditional"
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],
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"attn_pdrop": 0.0,
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"bos_token_id": 1,
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"conditions_shared_adapter": true,
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"ec2encoding_file": "data/ec2drfp.pt",
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"embd_pdrop": 0.0,
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"encoding_dimensions": {
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"ec": 256
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},
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"encoding_files": {
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"ec": "data/ec2CREEP_text.pt"
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},
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"eos_token_id": 2,
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"full_finetuning": false,
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"full_fineturning": false,
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"gradient_checkpointing": true,
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"initializer_range": 0.02,
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"inter_context_sequence_attention": true,
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"inter_sequence_attention": true,
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"layer_norm_epsilon": 1e-05,
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"max_num_sequences": 512,
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"model_type": "progen-conditional",
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"msa_style_attention": true,
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"n_ctx": 2048,
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"n_embd": 1536,
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"n_head": 16,
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"n_inner": null,
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"n_layer": 27,
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"n_positions": 2048,
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"output_router_logits": true,
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"pad_token_id": 0,
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"pretrained_model_dir": "data/pretrained_models/progen2-base",
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"pretrained_model_name": "progen2-base",
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"resid_pdrop": 0.0,
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"rotary_dim": 48,
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"router_aux_loss_coef": 0.05,
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"scale_attn_weights": true,
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"summary_activation": null,
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"summary_first_dropout": 0.1,
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"summary_proj_to_labels": true,
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"summary_type": "cls_index",
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"summary_use_proj": true,
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"task_specific_params": {
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"text-generation": {
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"do_sample": true,
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"max_length": 50,
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"temperature": 1.0
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}
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},
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"tokenizer_class": "GPT2Tokenizer",
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"torch_dtype": "bfloat16",
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"transformers_version": "4.41.2",
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"unified_active_context_pos_ids": true,
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"use_cache": true,
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"vocab_size": 32
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}
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ec-creep-swissprot/1.5B/model.safetensors
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:ebc9ef04b29c996b68d1a7b6d383ed6fd95218ab3bcfbacb1a54de5c71d3819a
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+
size 1828528686
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ec-drfp-swissprot/1.5B/config.json
ADDED
@@ -0,0 +1,69 @@
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{
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"activation_function": "gelu_new",
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"adapter_c_hidden": 16,
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"adapter_c_s": 256,
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5 |
+
"adapter_dropout": 0.1,
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+
"adapter_input_dim": 2048,
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+
"adapter_nlayers": 4,
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+
"adapter_projection_nlayers": 2,
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9 |
+
"adapter_shared_projection": true,
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+
"adapter_summation": false,
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+
"adapter_weight_init": 1e-05,
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+
"architectures": [
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"ProgenConditional"
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],
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"attn_pdrop": 0.0,
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16 |
+
"bos_token_id": 1,
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"conditions_shared_adapter": true,
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"ec2encoding_file": "data/ec2drfp.pt",
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"embd_pdrop": 0.0,
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"encoding_dimensions": {
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"ec": 2048
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},
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"encoding_files": {
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"ec": "data/ec2drfp.pt"
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},
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"eos_token_id": 2,
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"full_finetuning": false,
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"full_fineturning": false,
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"gradient_checkpointing": true,
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"initializer_range": 0.02,
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"inter_context_sequence_attention": true,
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"inter_sequence_attention": true,
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"layer_norm_epsilon": 1e-05,
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"max_num_sequences": 512,
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"model_type": "progen-conditional",
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"msa_style_attention": true,
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"n_ctx": 2048,
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"n_embd": 1536,
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"n_head": 16,
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"n_inner": null,
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"n_layer": 27,
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"n_positions": 2048,
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"output_router_logits": true,
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"pad_token_id": 0,
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"pretrained_model_dir": "data/pretrained_models/progen2-base",
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"pretrained_model_name": "progen2-base",
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"resid_pdrop": 0.0,
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+
"rotary_dim": 48,
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+
"router_aux_loss_coef": 0.05,
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+
"scale_attn_weights": true,
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+
"summary_activation": null,
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+
"summary_first_dropout": 0.1,
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+
"summary_proj_to_labels": true,
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"summary_type": "cls_index",
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"summary_use_proj": true,
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+
"task_specific_params": {
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"text-generation": {
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"do_sample": true,
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"max_length": 50,
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"temperature": 1.0
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}
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},
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"tokenizer_class": "GPT2Tokenizer",
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"torch_dtype": "bfloat16",
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"transformers_version": "4.41.2",
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"unified_active_context_pos_ids": true,
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"use_cache": true,
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"vocab_size": 32
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}
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ec-drfp-swissprot/1.5B/model.safetensors
ADDED
@@ -0,0 +1,3 @@
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1 |
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version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:775e677d21bce75adaba5762e5ec42ea4e5390453c0254e910a3e6e027fc3476
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+
size 1828987438
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ec-onehot-swissprot/1.5B/config.json
ADDED
@@ -0,0 +1,71 @@
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{
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"activation_function": "gelu_new",
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"adapter_c_hidden": 16,
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"adapter_c_s": 256,
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+
"adapter_dropout": 0.1,
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"adapter_input_dim": 2048,
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+
"adapter_nlayers": 4,
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"adapter_projection_nlayers": 2,
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"adapter_shared_projection": true,
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"adapter_summation": false,
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"adapter_weight_init": 1e-05,
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+
"architectures": [
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"ProgenConditional"
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],
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+
"attn_pdrop": 0.0,
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+
"bos_token_id": 1,
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+
"conditions_shared_adapter": false,
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+
"ec2encoding_file": "data/ec2drfp.pt",
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+
"embd_pdrop": 0.0,
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+
"encoding_dimensions": {
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+
"ec": 630,
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+
"tax": 4
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},
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+
"encoding_files": {
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"ec": "data/ec2level4_onehot.pt",
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"tax": "data/tax2level1_onehot.pt"
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},
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"eos_token_id": 2,
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+
"full_finetuning": false,
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+
"full_fineturning": false,
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"gradient_checkpointing": true,
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+
"initializer_range": 0.02,
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"inter_context_sequence_attention": true,
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"inter_sequence_attention": true,
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"layer_norm_epsilon": 1e-05,
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"max_num_sequences": 512,
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"model_type": "progen-conditional",
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"msa_style_attention": true,
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"n_ctx": 2048,
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"n_embd": 1536,
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"n_head": 16,
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"n_inner": null,
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"n_layer": 27,
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"n_positions": 2048,
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"output_router_logits": true,
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"pad_token_id": 0,
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"pretrained_model_dir": "data/pretrained_models/progen2-base",
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"pretrained_model_name": "progen2-base",
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"resid_pdrop": 0.0,
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+
"rotary_dim": 48,
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+
"router_aux_loss_coef": 0.05,
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+
"scale_attn_weights": true,
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+
"summary_activation": null,
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54 |
+
"summary_first_dropout": 0.1,
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+
"summary_proj_to_labels": true,
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+
"summary_type": "cls_index",
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"summary_use_proj": true,
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+
"task_specific_params": {
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+
"text-generation": {
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"do_sample": true,
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"max_length": 50,
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+
"temperature": 1.0
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}
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},
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"tokenizer_class": "GPT2Tokenizer",
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+
"torch_dtype": "bfloat16",
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+
"transformers_version": "4.41.2",
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68 |
+
"unified_active_context_pos_ids": true,
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69 |
+
"use_cache": true,
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70 |
+
"vocab_size": 32
|
71 |
+
}
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ec-onehot-swissprot/{ba11000 → 1.5B}/model.safetensors
RENAMED
File without changes
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ec-onehot-swissprot/ba11000/generation_config.json
DELETED
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{
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"_from_model_config": true,
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"bos_token_id": 1,
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-
"eos_token_id": 2,
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-
"pad_token_id": 0,
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"transformers_version": "4.41.2"
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}
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ec-onehot-uniref/9B/config.json
ADDED
@@ -0,0 +1,69 @@
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{
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+
"activation_function": "gelu_new",
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+
"adapter_c_hidden": 16,
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4 |
+
"adapter_c_s": 256,
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5 |
+
"adapter_dropout": 0.1,
|
6 |
+
"adapter_input_dim": 2048,
|
7 |
+
"adapter_nlayers": 4,
|
8 |
+
"adapter_projection_nlayers": 2,
|
9 |
+
"adapter_shared_projection": true,
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10 |
+
"adapter_summation": false,
|
11 |
+
"adapter_weight_init": 1e-05,
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12 |
+
"architectures": [
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"ProgenConditional"
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+
],
|
15 |
+
"attn_pdrop": 0.0,
|
16 |
+
"bos_token_id": 1,
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17 |
+
"conditions_shared_adapter": true,
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18 |
+
"ec2encoding_file": "data/ec2drfp.pt",
|
19 |
+
"embd_pdrop": 0.0,
|
20 |
+
"encoding_dimensions": {
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+
"ec": 496
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+
},
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+
"encoding_files": {
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"ec": "data/ec-uniref2level4_onehot.pt"
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},
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26 |
+
"eos_token_id": 2,
|
27 |
+
"full_finetuning": false,
|
28 |
+
"full_fineturning": false,
|
29 |
+
"gradient_checkpointing": true,
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30 |
+
"initializer_range": 0.02,
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31 |
+
"inter_context_sequence_attention": true,
|
32 |
+
"inter_sequence_attention": true,
|
33 |
+
"layer_norm_epsilon": 1e-05,
|
34 |
+
"max_num_sequences": 512,
|
35 |
+
"model_type": "progen-conditional",
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36 |
+
"msa_style_attention": true,
|
37 |
+
"n_ctx": 2048,
|
38 |
+
"n_embd": 1536,
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39 |
+
"n_head": 16,
|
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|
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|
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ec-onehot-uniref/9B/model.safetensors
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tax-swissprot/9B/config.json
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@@ -0,0 +1,69 @@
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|
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|
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|
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|
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|
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|
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tax-swissprot/9B/model.safetensors
ADDED
@@ -0,0 +1,3 @@
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