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End of training

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  1. README.md +69 -0
  2. config.json +26 -0
  3. model.safetensors +3 -0
  4. training_args.bin +3 -0
README.md ADDED
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+ ---
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+ library_name: transformers
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+ base_model: dmis-lab/biobert-v1.1
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+ tags:
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+ - generated_from_trainer
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+ metrics:
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+ - accuracy
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+ - f1
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+ model-index:
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+ - name: biobert-v1.1-finetuned-medmcqa-2024-11-25-T16-48-24
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+ results: []
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+ ---
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+
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+ <!-- This model card has been generated automatically according to the information the Trainer had access to. You
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+ should probably proofread and complete it, then remove this comment. -->
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+
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+ # biobert-v1.1-finetuned-medmcqa-2024-11-25-T16-48-24
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+
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+ This model is a fine-tuned version of [dmis-lab/biobert-v1.1](https://huggingface.co/dmis-lab/biobert-v1.1) on an unknown dataset.
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+ It achieves the following results on the evaluation set:
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+ - Loss: 0.7763
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+ - Accuracy: 0.8095
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+ - F1: 0.8138
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+
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+ ## Model description
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+
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+ More information needed
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+
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+ ## Intended uses & limitations
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+
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+ More information needed
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+
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+ ## Training and evaluation data
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+
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+ More information needed
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+
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+ ## Training procedure
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+
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+ ### Training hyperparameters
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+
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+ The following hyperparameters were used during training:
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+ - learning_rate: 0.000159
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+ - train_batch_size: 16
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+ - eval_batch_size: 16
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+ - seed: 42
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+ - gradient_accumulation_steps: 8
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+ - total_train_batch_size: 128
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+ - optimizer: Use adamw_torch with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
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+ - lr_scheduler_type: linear
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+ - num_epochs: 5
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+ - mixed_precision_training: Native AMP
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+
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+ ### Training results
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+
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+ | Training Loss | Epoch | Step | Validation Loss | Accuracy | F1 |
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+ |:-------------:|:------:|:----:|:---------------:|:--------:|:------:|
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+ | 1.3838 | 0.9739 | 14 | 1.0207 | 0.6905 | 0.6764 |
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+ | 1.086 | 1.9478 | 28 | 0.9525 | 0.6190 | 0.6189 |
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+ | 0.6655 | 2.9913 | 43 | 0.7763 | 0.8095 | 0.8138 |
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+ | 0.5349 | 3.9652 | 57 | 0.8631 | 0.7381 | 0.7368 |
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+ | 0.3138 | 4.8696 | 70 | 0.8401 | 0.7857 | 0.7854 |
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+
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+
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+ ### Framework versions
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+
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+ - Transformers 4.46.2
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+ - Pytorch 2.5.1+cu121
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+ - Datasets 3.1.0
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+ - Tokenizers 0.20.3
config.json ADDED
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+ {
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+ "_name_or_path": "dmis-lab/biobert-v1.1",
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+ "architectures": [
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+ "BertForMultipleChoice"
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+ ],
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+ "attention_probs_dropout_prob": 0.1,
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+ "classifier_dropout": null,
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+ "gradient_checkpointing": false,
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+ "hidden_act": "gelu",
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+ "hidden_dropout_prob": 0.1,
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+ "hidden_size": 768,
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+ "initializer_range": 0.02,
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+ "intermediate_size": 3072,
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+ "layer_norm_eps": 1e-12,
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+ "max_position_embeddings": 512,
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+ "model_type": "bert",
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+ "num_attention_heads": 12,
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+ "num_hidden_layers": 12,
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+ "pad_token_id": 0,
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+ "position_embedding_type": "absolute",
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+ "torch_dtype": "float32",
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+ "transformers_version": "4.46.2",
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+ "type_vocab_size": 2,
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+ "use_cache": true,
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+ "vocab_size": 28996
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+ }
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