Training in progress, epoch 1

.gitignore

@@ -0,0 +1 @@
+checkpoint-*/

config.json

@@ -0,0 +1,44 @@
+{
+  "_name_or_path": "bionlp/bluebert_pubmed_mimic_uncased_L-12_H-768_A-12",
+  "architectures": [
+    "BertForSequenceClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "Epidemic Forecasting",
+    "1": "Treatment",
+    "2": "Prevention",
+    "3": "Mechanism",
+    "4": "Case Report",
+    "5": "Transmission",
+    "6": "Diagnosis"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "Case Report": 4,
+    "Diagnosis": 6,
+    "Epidemic Forecasting": 0,
+    "Mechanism": 3,
+    "Prevention": 2,
+    "Transmission": 5,
+    "Treatment": 1
+  },
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "problem_type": "multi_label_classification",
+  "torch_dtype": "float32",
+  "transformers_version": "4.28.0",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 30522
+}

pytorch_model.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d4385a6293e8fdd88537bcd56bc2fac8dc3e3deea2889a21a5a5ee848e00db0a
+size 438023285

runs/Jun09_12-00-39_83e75453b9c6/1686312077.5490708/events.out.tfevents.1686312077.83e75453b9c6.28438.1

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5d8bf3a004fca65e474aec632ee4fc2d1a19a8d2a5cf07dda40ca843cf61cd98
+size 5886

runs/Jun09_12-00-39_83e75453b9c6/events.out.tfevents.1686312077.83e75453b9c6.28438.0

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9b7f6ba052ac72fc1825cc96e5d75372e4081b436bf4961d3b6696033dd6279e
+size 5728

special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

tokenizer_config.json

@@ -0,0 +1,17 @@
+{
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": true,
+  "mask_token": "[MASK]",
+  "model_max_length": 512,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "padding": true,
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "truncation": true,
+  "unk_token": "[UNK]"
+}

training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c8b227968c8b309c2382830d578a52b3fc7a93fdc97ec7b8539f15bf0ade9b27
+size 3579