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[NOT TESTED] initial implementation of app
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# Copyright (c) Facebook, Inc. and its affiliates.
# Modified by Bowen Cheng from: https://github.com/facebookresearch/detr/blob/master/models/transformer.py
"""
Transformer class.
Copy-paste from torch.nn.Transformer with modifications:
* positional encodings are passed in MHattention
* extra LN at the end of encoder is removed
* decoder returns a stack of activations from all decoding layers
"""
import copy
from typing import List, Optional
import torch
import torch.nn.functional as F
from torch import Tensor, nn
class Transformer(nn.Module):
def __init__(
self,
d_model=512,
nhead=8,
num_encoder_layers=6,
num_decoder_layers=6,
dim_feedforward=2048,
dropout=0.1,
activation="relu",
normalize_before=False,
return_intermediate_dec=False,
):
super().__init__()
encoder_layer = TransformerEncoderLayer(
d_model, nhead, dim_feedforward, dropout, activation, normalize_before
)
encoder_norm = nn.LayerNorm(d_model) if normalize_before else None
self.encoder = TransformerEncoder(encoder_layer, num_encoder_layers, encoder_norm)
decoder_layer = TransformerDecoderLayer(
d_model, nhead, dim_feedforward, dropout, activation, normalize_before
)
decoder_norm = nn.LayerNorm(d_model)
self.decoder = TransformerDecoder(
decoder_layer,
num_decoder_layers,
decoder_norm,
return_intermediate=return_intermediate_dec,
)
self._reset_parameters()
self.d_model = d_model
self.nhead = nhead
def _reset_parameters(self):
for p in self.parameters():
if p.dim() > 1:
nn.init.xavier_uniform_(p)
def forward(self, src, mask, query_embed, pos_embed):
# flatten NxCxHxW to HWxNxC
bs, c, h, w = src.shape
src = src.flatten(2).permute(2, 0, 1)
pos_embed = pos_embed.flatten(2).permute(2, 0, 1)
query_embed = query_embed.unsqueeze(1).repeat(1, bs, 1)
if mask is not None:
mask = mask.flatten(1)
tgt = torch.zeros_like(query_embed)
memory = self.encoder(src, src_key_padding_mask=mask, pos=pos_embed)
hs = self.decoder(
tgt, memory, memory_key_padding_mask=mask, pos=pos_embed, query_pos=query_embed
)
return hs.transpose(1, 2), memory.permute(1, 2, 0).view(bs, c, h, w)
class TransformerEncoder(nn.Module):
def __init__(self, encoder_layer, num_layers, norm=None):
super().__init__()
self.layers = _get_clones(encoder_layer, num_layers)
self.num_layers = num_layers
self.norm = norm
def forward(
self,
src,
mask: Optional[Tensor] = None,
src_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
):
output = src
for layer in self.layers:
output = layer(
output, src_mask=mask, src_key_padding_mask=src_key_padding_mask, pos=pos
)
if self.norm is not None:
output = self.norm(output)
return output
class TransformerDecoder(nn.Module):
def __init__(self, decoder_layer, num_layers, norm=None, return_intermediate=False):
super().__init__()
self.layers = _get_clones(decoder_layer, num_layers)
self.num_layers = num_layers
self.norm = norm
self.return_intermediate = return_intermediate
def forward(
self,
tgt,
memory,
tgt_mask: Optional[Tensor] = None,
memory_mask: Optional[Tensor] = None,
tgt_key_padding_mask: Optional[Tensor] = None,
memory_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
query_pos: Optional[Tensor] = None,
):
output = tgt
intermediate = []
for layer in self.layers:
output = layer(
output,
memory,
tgt_mask=tgt_mask,
memory_mask=memory_mask,
tgt_key_padding_mask=tgt_key_padding_mask,
memory_key_padding_mask=memory_key_padding_mask,
pos=pos,
query_pos=query_pos,
)
if self.return_intermediate:
intermediate.append(self.norm(output))
if self.norm is not None:
output = self.norm(output)
if self.return_intermediate:
intermediate.pop()
intermediate.append(output)
if self.return_intermediate:
return torch.stack(intermediate)
return output.unsqueeze(0)
class TransformerEncoderLayer(nn.Module):
def __init__(
self,
d_model,
nhead,
dim_feedforward=2048,
dropout=0.1,
activation="relu",
normalize_before=False,
):
super().__init__()
self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
# Implementation of Feedforward model
self.linear1 = nn.Linear(d_model, dim_feedforward)
self.dropout = nn.Dropout(dropout)
self.linear2 = nn.Linear(dim_feedforward, d_model)
self.norm1 = nn.LayerNorm(d_model)
self.norm2 = nn.LayerNorm(d_model)
self.dropout1 = nn.Dropout(dropout)
self.dropout2 = nn.Dropout(dropout)
self.activation = _get_activation_fn(activation)
self.normalize_before = normalize_before
def with_pos_embed(self, tensor, pos: Optional[Tensor]):
return tensor if pos is None else tensor + pos
def forward_post(
self,
src,
src_mask: Optional[Tensor] = None,
src_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
):
q = k = self.with_pos_embed(src, pos)
src2 = self.self_attn(
q, k, value=src, attn_mask=src_mask, key_padding_mask=src_key_padding_mask
)[0]
src = src + self.dropout1(src2)
src = self.norm1(src)
src2 = self.linear2(self.dropout(self.activation(self.linear1(src))))
src = src + self.dropout2(src2)
src = self.norm2(src)
return src
def forward_pre(
self,
src,
src_mask: Optional[Tensor] = None,
src_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
):
src2 = self.norm1(src)
q = k = self.with_pos_embed(src2, pos)
src2 = self.self_attn(
q, k, value=src2, attn_mask=src_mask, key_padding_mask=src_key_padding_mask
)[0]
src = src + self.dropout1(src2)
src2 = self.norm2(src)
src2 = self.linear2(self.dropout(self.activation(self.linear1(src2))))
src = src + self.dropout2(src2)
return src
def forward(
self,
src,
src_mask: Optional[Tensor] = None,
src_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
):
if self.normalize_before:
return self.forward_pre(src, src_mask, src_key_padding_mask, pos)
return self.forward_post(src, src_mask, src_key_padding_mask, pos)
class TransformerDecoderLayer(nn.Module):
def __init__(
self,
d_model,
nhead,
dim_feedforward=2048,
dropout=0.1,
activation="relu",
normalize_before=False,
):
super().__init__()
self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
self.multihead_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
# Implementation of Feedforward model
self.linear1 = nn.Linear(d_model, dim_feedforward)
self.dropout = nn.Dropout(dropout)
self.linear2 = nn.Linear(dim_feedforward, d_model)
self.norm1 = nn.LayerNorm(d_model)
self.norm2 = nn.LayerNorm(d_model)
self.norm3 = nn.LayerNorm(d_model)
self.dropout1 = nn.Dropout(dropout)
self.dropout2 = nn.Dropout(dropout)
self.dropout3 = nn.Dropout(dropout)
self.activation = _get_activation_fn(activation)
self.normalize_before = normalize_before
def with_pos_embed(self, tensor, pos: Optional[Tensor]):
return tensor if pos is None else tensor + pos
def forward_post(
self,
tgt,
memory,
tgt_mask: Optional[Tensor] = None,
memory_mask: Optional[Tensor] = None,
tgt_key_padding_mask: Optional[Tensor] = None,
memory_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
query_pos: Optional[Tensor] = None,
):
q = k = self.with_pos_embed(tgt, query_pos)
tgt2 = self.self_attn(
q, k, value=tgt, attn_mask=tgt_mask, key_padding_mask=tgt_key_padding_mask
)[0]
tgt = tgt + self.dropout1(tgt2)
tgt = self.norm1(tgt)
tgt2 = self.multihead_attn(
query=self.with_pos_embed(tgt, query_pos),
key=self.with_pos_embed(memory, pos),
value=memory,
attn_mask=memory_mask,
key_padding_mask=memory_key_padding_mask,
)[0]
tgt = tgt + self.dropout2(tgt2)
tgt = self.norm2(tgt)
tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt))))
tgt = tgt + self.dropout3(tgt2)
tgt = self.norm3(tgt)
return tgt
def forward_pre(
self,
tgt,
memory,
tgt_mask: Optional[Tensor] = None,
memory_mask: Optional[Tensor] = None,
tgt_key_padding_mask: Optional[Tensor] = None,
memory_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
query_pos: Optional[Tensor] = None,
):
tgt2 = self.norm1(tgt)
q = k = self.with_pos_embed(tgt2, query_pos)
tgt2 = self.self_attn(
q, k, value=tgt2, attn_mask=tgt_mask, key_padding_mask=tgt_key_padding_mask
)[0]
tgt = tgt + self.dropout1(tgt2)
tgt2 = self.norm2(tgt)
tgt2 = self.multihead_attn(
query=self.with_pos_embed(tgt2, query_pos),
key=self.with_pos_embed(memory, pos),
value=memory,
attn_mask=memory_mask,
key_padding_mask=memory_key_padding_mask,
)[0]
tgt = tgt + self.dropout2(tgt2)
tgt2 = self.norm3(tgt)
tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt2))))
tgt = tgt + self.dropout3(tgt2)
return tgt
def forward(
self,
tgt,
memory,
tgt_mask: Optional[Tensor] = None,
memory_mask: Optional[Tensor] = None,
tgt_key_padding_mask: Optional[Tensor] = None,
memory_key_padding_mask: Optional[Tensor] = None,
pos: Optional[Tensor] = None,
query_pos: Optional[Tensor] = None,
):
if self.normalize_before:
return self.forward_pre(
tgt,
memory,
tgt_mask,
memory_mask,
tgt_key_padding_mask,
memory_key_padding_mask,
pos,
query_pos,
)
return self.forward_post(
tgt,
memory,
tgt_mask,
memory_mask,
tgt_key_padding_mask,
memory_key_padding_mask,
pos,
query_pos,
)
def _get_clones(module, N):
return nn.ModuleList([copy.deepcopy(module) for i in range(N)])
def _get_activation_fn(activation):
"""Return an activation function given a string"""
if activation == "relu":
return F.relu
if activation == "gelu":
return F.gelu
if activation == "glu":
return F.glu
raise RuntimeError(f"activation should be relu/gelu, not {activation}.")