Meta-MMS / uroman /bin /uroman-tsv.sh
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#!/usr/bin/env bash
# Created by Thamme Gowda on June 17, 2019
DIR=$(dirname "${BASH_SOURCE[0]}") # get the directory name
# DIR=$(realpath "${DIR}") # resolve its full path if need be
if [[ $# -lt 1 || $# -gt 2 ]]; then
>&2 echo "ERROR: invalid args"
>&2 echo "Usage: <input.tsv> [<output.tsv>]"
exit 2
fi
INP=$1
OUT=$2
CMD=$DIR/uroman.pl
function romanize(){
paste <(cut -f1 $INP) <(cut -f2 $INP | $CMD)
}
if [[ -n $OUT ]]; then
romanize > $OUT
else
romanize
fi