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Runtime error
Runtime error
| inference: | |
| input_pdb: C:\Users\adminisiterlator\Desktop\wanglesheishishei1.pdb | |
| num_designs: 1 | |
| design_startnum: 0 | |
| ckpt_override_path: null | |
| symmetry: null | |
| recenter: true | |
| radius: 10.0 | |
| model_only_neighbors: false | |
| output_prefix: testoutputs/binder_test | |
| write_trajectory: true | |
| scaffold_guided: false | |
| model_runner: SelfConditioning | |
| cautious: true | |
| align_motif: true | |
| symmetric_self_cond: true | |
| final_step: 1 | |
| deterministic: false | |
| trb_save_ckpt_path: null | |
| schedule_directory_path: null | |
| model_directory_path: null | |
| contigmap: | |
| contigs: | |
| - A46-291/0 150-150 | |
| inpaint_seq: null | |
| provide_seq: null | |
| length: null | |
| model: | |
| n_extra_block: 4 | |
| n_main_block: 32 | |
| n_ref_block: 4 | |
| d_msa: 256 | |
| d_msa_full: 64 | |
| d_pair: 128 | |
| d_templ: 64 | |
| n_head_msa: 8 | |
| n_head_pair: 4 | |
| n_head_templ: 4 | |
| d_hidden: 32 | |
| d_hidden_templ: 32 | |
| p_drop: 0.15 | |
| SE3_param_full: | |
| num_layers: 1 | |
| num_channels: 32 | |
| num_degrees: 2 | |
| n_heads: 4 | |
| div: 4 | |
| l0_in_features: 8 | |
| l0_out_features: 8 | |
| l1_in_features: 3 | |
| l1_out_features: 2 | |
| num_edge_features: 32 | |
| SE3_param_topk: | |
| num_layers: 1 | |
| num_channels: 32 | |
| num_degrees: 2 | |
| n_heads: 4 | |
| div: 4 | |
| l0_in_features: 64 | |
| l0_out_features: 64 | |
| l1_in_features: 3 | |
| l1_out_features: 2 | |
| num_edge_features: 64 | |
| freeze_track_motif: false | |
| use_motif_timestep: false | |
| diffuser: | |
| T: 50 | |
| b_0: 0.01 | |
| b_T: 0.07 | |
| schedule_type: linear | |
| so3_type: igso3 | |
| crd_scale: 0.25 | |
| partial_T: null | |
| so3_schedule_type: linear | |
| min_b: 1.5 | |
| max_b: 2.5 | |
| min_sigma: 0.02 | |
| max_sigma: 1.5 | |
| denoiser: | |
| noise_scale_ca: 1 | |
| final_noise_scale_ca: 1 | |
| ca_noise_schedule_type: constant | |
| noise_scale_frame: 1 | |
| final_noise_scale_frame: 1 | |
| frame_noise_schedule_type: constant | |
| ppi: | |
| hotspot_res: | |
| - A48 | |
| - A64 | |
| - A73 | |
| - A74 | |
| - A75 | |
| - A76 | |
| - A81 | |
| - A92 | |
| - A93 | |
| - A94 | |
| - A95 | |
| - A97 | |
| - A100 | |
| - A102 | |
| - A110 | |
| - A129 | |
| - A133 | |
| - A134 | |
| - A136 | |
| - A137 | |
| - A138 | |
| - A142 | |
| - A155 | |
| - A158 | |
| - A165 | |
| - A166 | |
| - A168 | |
| - A169 | |
| - A184 | |
| - A189 | |
| - A192 | |
| - A193 | |
| - A205 | |
| - A206 | |
| - A209 | |
| - A212 | |
| - A215 | |
| - A222 | |
| - A223 | |
| - A225 | |
| - A226 | |
| - A227 | |
| - A228 | |
| - A229 | |
| - A230 | |
| - A234 | |
| - A241 | |
| - A251 | |
| - A257 | |
| - A258 | |
| - A259 | |
| - A260 | |
| - A271 | |
| - A275 | |
| - A276 | |
| potentials: | |
| guiding_potentials: null | |
| guide_scale: 10 | |
| guide_decay: constant | |
| olig_inter_all: null | |
| olig_intra_all: null | |
| olig_custom_contact: null | |
| substrate: null | |
| contig_settings: | |
| ref_idx: null | |
| hal_idx: null | |
| idx_rf: null | |
| inpaint_seq_tensor: null | |
| preprocess: | |
| sidechain_input: false | |
| motif_sidechain_input: true | |
| d_t1d: 22 | |
| d_t2d: 44 | |
| prob_self_cond: 0.0 | |
| str_self_cond: false | |
| predict_previous: false | |
| logging: | |
| inputs: false | |
| scaffoldguided: | |
| scaffoldguided: false | |
| target_pdb: false | |
| target_path: null | |
| scaffold_list: null | |
| scaffold_dir: null | |
| sampled_insertion: 0 | |
| sampled_N: 0 | |
| sampled_C: 0 | |
| ss_mask: 0 | |
| systematic: false | |
| target_ss: null | |
| target_adj: null | |
| mask_loops: true | |
| contig_crop: null | |