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.gitattributes

@@ -38,3 +38,4 @@ RFdiffusion/img/diffusion_protein_gradient_2.jpg filter=lfs diff=lfs merge=lfs -
 RFdiffusion/pyrosetta-2023.14+release.7132bdc754a-cp310-cp310-linux_x86_64.whl filter=lfs diff=lfs merge=lfs -text
 env/SE3Transformer/images/se3-transformer.png filter=lfs diff=lfs merge=lfs -text
 img/diffusion_protein_gradient_2.jpg filter=lfs diff=lfs merge=lfs -text
+pyrosetta-2023.14+release.7132bdc754a-cp310-cp310-linux_x86_64.whl filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -0,0 +1,16 @@
+*.py[cod]
+rfdiffusion.egg-info
+
+models/
+schedules/
+
+examples/ppi_scaffolds
+
+tests/.results.json
+tests/input_pdbs
+tests/outputs
+tests/ppi_scaffolds
+tests/reference_outputs/
+tests/target_folds
+tests/tim_barrel_scaffold
+tests/tests_*

END

@@ -0,0 +1,7 @@
+{
+	"retCode":"100",
+	"retData":null,
+	"retMsg":"操作成功",
+	"retTime":"2022-11-05 22:20:09",
+	"success":true
+}

LICENSE

@@ -0,0 +1,30 @@
+BSD License
+
+Copyright (c) 2023 University of Washington. Developed at the Institute for
+Protein Design by Joseph Watson, David Juergens, Nathaniel Bennett, Brian Trippe
+and Jason Yim
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer.
+
+Redistributions in binary form must reproduce the above copyright notice, this
+list of conditions and the following disclaimer in the documentation and/or
+other materials provided with the distribution.
+
+Neither the name of the University of Washington nor the names of its
+contributors may be used to endorse or promote products derived from this
+software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE UNIVERSITY OF WASHINGTON AND CONTRIBUTORS “AS
+IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE UNIVERSITY OF WASHINGTON OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

pyrosetta-2023.14+release.7132bdc754a-cp310-cp310-linux_x86_64.whl

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9f4c30259aae0c53a6e19469a14de861bce5dcb9819c2f329543307264230424
+size 1643811383

setup.py

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+from setuptools import setup, find_packages
+
+setup(name='rfdiffusion',
+      version='1.1.0',
+      description='RFdiffusion is an open source method for protein structure generation.',
+      author='Rosetta Commons',
+      url='https://github.com/RosettaCommons/RFdiffusion',
+      scripts=["scripts/run_inference.py"],
+      packages=find_packages(),
+      install_requires=['torch', 'se3-transformer'])