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OleinikovasV
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•
3240ef1
1
Parent(s):
e7b35c6
Update inference_app.py
Browse files- inference_app.py +3 -3
inference_app.py
CHANGED
@@ -24,10 +24,11 @@ def set_all_to_zero(input_pdb_file_1, input_pdb_file_2, output_file):
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# def predict (input_seq_1, input_msa_1, input_protein_1, input_seq_2,input_msa_2, input_protein_2):
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def predict(input_protein_1, input_protein_2):
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start_time = time.time()
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# Do inference here
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-
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# return an output pdb file with the protein and two chains A and B.
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output_file = "test_out.pdb"
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set_all_to_zero(input_protein_1, input_protein_2, output_file)
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# also return a JSON with any metrics you want to report
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metrics = {"F_nat": 100}
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@@ -45,7 +46,7 @@ with gr.Blocks() as app:
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with gr.Column():
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# input_seq_1 = gr.Textbox(lines=3, label="Input Protein 1 sequence (FASTA)")
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# input_msa_1 = gr.File(label="Input MSA Protein 1 (A3M)")
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-
input_protein_1 = gr.File(label="Input Protein
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with gr.Column():
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# input_seq_2 = gr.Textbox(lines=3, label="Input Protein 2 sequence (FASTA)")
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# input_msa_2 = gr.File(label="Input MSA Protein 2 (A3M)")
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@@ -67,7 +68,6 @@ with gr.Blocks() as app:
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[
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"3v1c_A.pdb",
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"3v1c_B.pdb",
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-
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],
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],
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[input_protein_1, input_protein_2],
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# def predict (input_seq_1, input_msa_1, input_protein_1, input_seq_2,input_msa_2, input_protein_2):
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def predict(input_protein_1, input_protein_2):
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start_time = time.time()
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+
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# Do inference here
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# return an output pdb file with the protein and two chains A and B.
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output_file = "test_out.pdb"
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+
print(input_protein_1, input_protein_2)
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set_all_to_zero(input_protein_1, input_protein_2, output_file)
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# also return a JSON with any metrics you want to report
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metrics = {"F_nat": 100}
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with gr.Column():
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# input_seq_1 = gr.Textbox(lines=3, label="Input Protein 1 sequence (FASTA)")
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# input_msa_1 = gr.File(label="Input MSA Protein 1 (A3M)")
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+
input_protein_1 = gr.File(label="Input Protein 1 monomer (PDB)")
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with gr.Column():
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# input_seq_2 = gr.Textbox(lines=3, label="Input Protein 2 sequence (FASTA)")
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# input_msa_2 = gr.File(label="Input MSA Protein 2 (A3M)")
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[
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"3v1c_A.pdb",
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"3v1c_B.pdb",
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],
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],
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[input_protein_1, input_protein_2],
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