Hugging Face's logo

Spaces:
NiniCat
/
CRISPRTool
Running

App Files Community
15
CRISPRTool
File size: 15,261 Bytes 
78c921d
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
 
"use strict";
// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements.  See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership.  The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License.  You may obtain a copy of the License at
//
//   http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied.  See the License for the
// specific language governing permissions and limitations
// under the License.
Object.defineProperty(exports, "__esModule", { value: true });
exports.instance = exports.setIntervalYearMonth = exports.setIntervalDayTime = exports.setIntervalValue = exports.setDecimal = exports.setTime = exports.setTimeNanosecond = exports.setTimeMicrosecond = exports.setTimeMillisecond = exports.setTimeSecond = exports.setTimestamp = exports.setTimestampNanosecond = exports.setTimestampMicrosecond = exports.setTimestampMillisecond = exports.setTimestampSecond = exports.setDate = exports.setFixedSizeBinary = exports.setDateMillisecond = exports.setDateDay = exports.setAnyFloat = exports.setFloat16 = exports.setFloat = exports.setInt = exports.setVariableWidthBytes = exports.setEpochMsToNanosecondsLong = exports.setEpochMsToMicrosecondsLong = exports.setEpochMsToMillisecondsLong = exports.setEpochMsToDays = exports.SetVisitor = void 0;
const vector_js_1 = require("../vector.js");
const visitor_js_1 = require("../visitor.js");
const utf8_js_1 = require("../util/utf8.js");
const math_js_1 = require("../util/math.js");
const enum_js_1 = require("../enum.js");
/** @ignore */
class SetVisitor extends visitor_js_1.Visitor {
}
exports.SetVisitor = SetVisitor;
/** @ignore */
function wrapSet(fn) {
    return (data, _1, _2) => {
        if (data.setValid(_1, _2 != null)) {
            return fn(data, _1, _2);
        }
    };
}
/** @ignore */
const setEpochMsToDays = (data, index, epochMs) => { data[index] = Math.trunc(epochMs / 86400000); };
exports.setEpochMsToDays = setEpochMsToDays;
/** @ignore */
const setEpochMsToMillisecondsLong = (data, index, epochMs) => {
    data[index] = Math.trunc(epochMs % 4294967296);
    data[index + 1] = Math.trunc(epochMs / 4294967296);
};
exports.setEpochMsToMillisecondsLong = setEpochMsToMillisecondsLong;
/** @ignore */
const setEpochMsToMicrosecondsLong = (data, index, epochMs) => {
    data[index] = Math.trunc((epochMs * 1000) % 4294967296);
    data[index + 1] = Math.trunc((epochMs * 1000) / 4294967296);
};
exports.setEpochMsToMicrosecondsLong = setEpochMsToMicrosecondsLong;
/** @ignore */
const setEpochMsToNanosecondsLong = (data, index, epochMs) => {
    data[index] = Math.trunc((epochMs * 1000000) % 4294967296);
    data[index + 1] = Math.trunc((epochMs * 1000000) / 4294967296);
};
exports.setEpochMsToNanosecondsLong = setEpochMsToNanosecondsLong;
/** @ignore */
const setVariableWidthBytes = (values, valueOffsets, index, value) => {
    if (index + 1 < valueOffsets.length) {
        const { [index]: x, [index + 1]: y } = valueOffsets;
        values.set(value.subarray(0, y - x), x);
    }
};
exports.setVariableWidthBytes = setVariableWidthBytes;
/** @ignore */
const setBool = ({ offset, values }, index, val) => {
    const idx = offset + index;
    val ? (values[idx >> 3] |= (1 << (idx % 8))) // true
        : (values[idx >> 3] &= ~(1 << (idx % 8))); // false
};
/** @ignore */
const setInt = ({ values }, index, value) => { values[index] = value; };
exports.setInt = setInt;
/** @ignore */
const setFloat = ({ values }, index, value) => { values[index] = value; };
exports.setFloat = setFloat;
/** @ignore */
const setFloat16 = ({ values }, index, value) => { values[index] = (0, math_js_1.float64ToUint16)(value); };
exports.setFloat16 = setFloat16;
/* istanbul ignore next */
/** @ignore */
const setAnyFloat = (data, index, value) => {
    switch (data.type.precision) {
        case enum_js_1.Precision.HALF:
            return (0, exports.setFloat16)(data, index, value);
        case enum_js_1.Precision.SINGLE:
        case enum_js_1.Precision.DOUBLE:
            return (0, exports.setFloat)(data, index, value);
    }
};
exports.setAnyFloat = setAnyFloat;
/** @ignore */
const setDateDay = ({ values }, index, value) => { (0, exports.setEpochMsToDays)(values, index, value.valueOf()); };
exports.setDateDay = setDateDay;
/** @ignore */
const setDateMillisecond = ({ values }, index, value) => { (0, exports.setEpochMsToMillisecondsLong)(values, index * 2, value.valueOf()); };
exports.setDateMillisecond = setDateMillisecond;
/** @ignore */
const setFixedSizeBinary = ({ stride, values }, index, value) => { values.set(value.subarray(0, stride), stride * index); };
exports.setFixedSizeBinary = setFixedSizeBinary;
/** @ignore */
const setBinary = ({ values, valueOffsets }, index, value) => (0, exports.setVariableWidthBytes)(values, valueOffsets, index, value);
/** @ignore */
const setUtf8 = ({ values, valueOffsets }, index, value) => {
    (0, exports.setVariableWidthBytes)(values, valueOffsets, index, (0, utf8_js_1.encodeUtf8)(value));
};
/* istanbul ignore next */
const setDate = (data, index, value) => {
    data.type.unit === enum_js_1.DateUnit.DAY
        ? (0, exports.setDateDay)(data, index, value)
        : (0, exports.setDateMillisecond)(data, index, value);
};
exports.setDate = setDate;
/** @ignore */
const setTimestampSecond = ({ values }, index, value) => (0, exports.setEpochMsToMillisecondsLong)(values, index * 2, value / 1000);
exports.setTimestampSecond = setTimestampSecond;
/** @ignore */
const setTimestampMillisecond = ({ values }, index, value) => (0, exports.setEpochMsToMillisecondsLong)(values, index * 2, value);
exports.setTimestampMillisecond = setTimestampMillisecond;
/** @ignore */
const setTimestampMicrosecond = ({ values }, index, value) => (0, exports.setEpochMsToMicrosecondsLong)(values, index * 2, value);
exports.setTimestampMicrosecond = setTimestampMicrosecond;
/** @ignore */
const setTimestampNanosecond = ({ values }, index, value) => (0, exports.setEpochMsToNanosecondsLong)(values, index * 2, value);
exports.setTimestampNanosecond = setTimestampNanosecond;
/* istanbul ignore next */
/** @ignore */
const setTimestamp = (data, index, value) => {
    switch (data.type.unit) {
        case enum_js_1.TimeUnit.SECOND: return (0, exports.setTimestampSecond)(data, index, value);
        case enum_js_1.TimeUnit.MILLISECOND: return (0, exports.setTimestampMillisecond)(data, index, value);
        case enum_js_1.TimeUnit.MICROSECOND: return (0, exports.setTimestampMicrosecond)(data, index, value);
        case enum_js_1.TimeUnit.NANOSECOND: return (0, exports.setTimestampNanosecond)(data, index, value);
    }
};
exports.setTimestamp = setTimestamp;
/** @ignore */
const setTimeSecond = ({ values }, index, value) => { values[index] = value; };
exports.setTimeSecond = setTimeSecond;
/** @ignore */
const setTimeMillisecond = ({ values }, index, value) => { values[index] = value; };
exports.setTimeMillisecond = setTimeMillisecond;
/** @ignore */
const setTimeMicrosecond = ({ values }, index, value) => { values[index] = value; };
exports.setTimeMicrosecond = setTimeMicrosecond;
/** @ignore */
const setTimeNanosecond = ({ values }, index, value) => { values[index] = value; };
exports.setTimeNanosecond = setTimeNanosecond;
/* istanbul ignore next */
/** @ignore */
const setTime = (data, index, value) => {
    switch (data.type.unit) {
        case enum_js_1.TimeUnit.SECOND: return (0, exports.setTimeSecond)(data, index, value);
        case enum_js_1.TimeUnit.MILLISECOND: return (0, exports.setTimeMillisecond)(data, index, value);
        case enum_js_1.TimeUnit.MICROSECOND: return (0, exports.setTimeMicrosecond)(data, index, value);
        case enum_js_1.TimeUnit.NANOSECOND: return (0, exports.setTimeNanosecond)(data, index, value);
    }
};
exports.setTime = setTime;
/** @ignore */
const setDecimal = ({ values, stride }, index, value) => { values.set(value.subarray(0, stride), stride * index); };
exports.setDecimal = setDecimal;
/** @ignore */
const setList = (data, index, value) => {
    const values = data.children[0];
    const valueOffsets = data.valueOffsets;
    const set = exports.instance.getVisitFn(values);
    if (Array.isArray(value)) {
        for (let idx = -1, itr = valueOffsets[index], end = valueOffsets[index + 1]; itr < end;) {
            set(values, itr++, value[++idx]);
        }
    }
    else {
        for (let idx = -1, itr = valueOffsets[index], end = valueOffsets[index + 1]; itr < end;) {
            set(values, itr++, value.get(++idx));
        }
    }
};
/** @ignore */
const setMap = (data, index, value) => {
    const values = data.children[0];
    const { valueOffsets } = data;
    const set = exports.instance.getVisitFn(values);
    let { [index]: idx, [index + 1]: end } = valueOffsets;
    const entries = value instanceof Map ? value.entries() : Object.entries(value);
    for (const val of entries) {
        set(values, idx, val);
        if (++idx >= end)
            break;
    }
};
/** @ignore */ const _setStructArrayValue = (o, v) => (set, c, _, i) => c && set(c, o, v[i]);
/** @ignore */ const _setStructVectorValue = (o, v) => (set, c, _, i) => c && set(c, o, v.get(i));
/** @ignore */ const _setStructMapValue = (o, v) => (set, c, f, _) => c && set(c, o, v.get(f.name));
/** @ignore */ const _setStructObjectValue = (o, v) => (set, c, f, _) => c && set(c, o, v[f.name]);
/** @ignore */
const setStruct = (data, index, value) => {
    const childSetters = data.type.children.map((f) => exports.instance.getVisitFn(f.type));
    const set = value instanceof Map ? _setStructMapValue(index, value) :
        value instanceof vector_js_1.Vector ? _setStructVectorValue(index, value) :
            Array.isArray(value) ? _setStructArrayValue(index, value) :
                _setStructObjectValue(index, value);
    // eslint-disable-next-line unicorn/no-array-for-each
    data.type.children.forEach((f, i) => set(childSetters[i], data.children[i], f, i));
};
/* istanbul ignore next */
/** @ignore */
const setUnion = (data, index, value) => {
    data.type.mode === enum_js_1.UnionMode.Dense ?
        setDenseUnion(data, index, value) :
        setSparseUnion(data, index, value);
};
/** @ignore */
const setDenseUnion = (data, index, value) => {
    const childIndex = data.type.typeIdToChildIndex[data.typeIds[index]];
    const child = data.children[childIndex];
    exports.instance.visit(child, data.valueOffsets[index], value);
};
/** @ignore */
const setSparseUnion = (data, index, value) => {
    const childIndex = data.type.typeIdToChildIndex[data.typeIds[index]];
    const child = data.children[childIndex];
    exports.instance.visit(child, index, value);
};
/** @ignore */
const setDictionary = (data, index, value) => {
    var _a;
    (_a = data.dictionary) === null || _a === void 0 ? void 0 : _a.set(data.values[index], value);
};
/* istanbul ignore next */
/** @ignore */
const setIntervalValue = (data, index, value) => {
    (data.type.unit === enum_js_1.IntervalUnit.DAY_TIME)
        ? (0, exports.setIntervalDayTime)(data, index, value)
        : (0, exports.setIntervalYearMonth)(data, index, value);
};
exports.setIntervalValue = setIntervalValue;
/** @ignore */
const setIntervalDayTime = ({ values }, index, value) => { values.set(value.subarray(0, 2), 2 * index); };
exports.setIntervalDayTime = setIntervalDayTime;
/** @ignore */
const setIntervalYearMonth = ({ values }, index, value) => { values[index] = (value[0] * 12) + (value[1] % 12); };
exports.setIntervalYearMonth = setIntervalYearMonth;
/** @ignore */
const setFixedSizeList = (data, index, value) => {
    const { stride } = data;
    const child = data.children[0];
    const set = exports.instance.getVisitFn(child);
    if (Array.isArray(value)) {
        for (let idx = -1, offset = index * stride; ++idx < stride;) {
            set(child, offset + idx, value[idx]);
        }
    }
    else {
        for (let idx = -1, offset = index * stride; ++idx < stride;) {
            set(child, offset + idx, value.get(idx));
        }
    }
};
SetVisitor.prototype.visitBool = wrapSet(setBool);
SetVisitor.prototype.visitInt = wrapSet(exports.setInt);
SetVisitor.prototype.visitInt8 = wrapSet(exports.setInt);
SetVisitor.prototype.visitInt16 = wrapSet(exports.setInt);
SetVisitor.prototype.visitInt32 = wrapSet(exports.setInt);
SetVisitor.prototype.visitInt64 = wrapSet(exports.setInt);
SetVisitor.prototype.visitUint8 = wrapSet(exports.setInt);
SetVisitor.prototype.visitUint16 = wrapSet(exports.setInt);
SetVisitor.prototype.visitUint32 = wrapSet(exports.setInt);
SetVisitor.prototype.visitUint64 = wrapSet(exports.setInt);
SetVisitor.prototype.visitFloat = wrapSet(exports.setAnyFloat);
SetVisitor.prototype.visitFloat16 = wrapSet(exports.setFloat16);
SetVisitor.prototype.visitFloat32 = wrapSet(exports.setFloat);
SetVisitor.prototype.visitFloat64 = wrapSet(exports.setFloat);
SetVisitor.prototype.visitUtf8 = wrapSet(setUtf8);
SetVisitor.prototype.visitBinary = wrapSet(setBinary);
SetVisitor.prototype.visitFixedSizeBinary = wrapSet(exports.setFixedSizeBinary);
SetVisitor.prototype.visitDate = wrapSet(exports.setDate);
SetVisitor.prototype.visitDateDay = wrapSet(exports.setDateDay);
SetVisitor.prototype.visitDateMillisecond = wrapSet(exports.setDateMillisecond);
SetVisitor.prototype.visitTimestamp = wrapSet(exports.setTimestamp);
SetVisitor.prototype.visitTimestampSecond = wrapSet(exports.setTimestampSecond);
SetVisitor.prototype.visitTimestampMillisecond = wrapSet(exports.setTimestampMillisecond);
SetVisitor.prototype.visitTimestampMicrosecond = wrapSet(exports.setTimestampMicrosecond);
SetVisitor.prototype.visitTimestampNanosecond = wrapSet(exports.setTimestampNanosecond);
SetVisitor.prototype.visitTime = wrapSet(exports.setTime);
SetVisitor.prototype.visitTimeSecond = wrapSet(exports.setTimeSecond);
SetVisitor.prototype.visitTimeMillisecond = wrapSet(exports.setTimeMillisecond);
SetVisitor.prototype.visitTimeMicrosecond = wrapSet(exports.setTimeMicrosecond);
SetVisitor.prototype.visitTimeNanosecond = wrapSet(exports.setTimeNanosecond);
SetVisitor.prototype.visitDecimal = wrapSet(exports.setDecimal);
SetVisitor.prototype.visitList = wrapSet(setList);
SetVisitor.prototype.visitStruct = wrapSet(setStruct);
SetVisitor.prototype.visitUnion = wrapSet(setUnion);
SetVisitor.prototype.visitDenseUnion = wrapSet(setDenseUnion);
SetVisitor.prototype.visitSparseUnion = wrapSet(setSparseUnion);
SetVisitor.prototype.visitDictionary = wrapSet(setDictionary);
SetVisitor.prototype.visitInterval = wrapSet(exports.setIntervalValue);
SetVisitor.prototype.visitIntervalDayTime = wrapSet(exports.setIntervalDayTime);
SetVisitor.prototype.visitIntervalYearMonth = wrapSet(exports.setIntervalYearMonth);
SetVisitor.prototype.visitFixedSizeList = wrapSet(setFixedSizeList);
SetVisitor.prototype.visitMap = wrapSet(setMap);
/** @ignore */
exports.instance = new SetVisitor();

//# sourceMappingURL=set.js.map