supercat666's picture
add igv
78c921d
raw
history blame
No virus
12.9 kB
"use strict";
// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.
Object.defineProperty(exports, "__esModule", { value: true });
exports.magicX2AndPadding = exports.magicAndPadding = exports.magicLength = exports.checkForMagicArrowString = exports.MAGIC = exports.MAGIC_STR = exports.PADDING = exports.JSONMessageReader = exports.AsyncMessageReader = exports.MessageReader = void 0;
const tslib_1 = require("tslib");
const enum_js_1 = require("../enum.js");
const flatbuffers_1 = require("flatbuffers");
const message_js_1 = require("./metadata/message.js");
const compat_js_1 = require("../util/compat.js");
const file_js_1 = require("../io/file.js");
const buffer_js_1 = require("../util/buffer.js");
const stream_js_1 = require("../io/stream.js");
const interfaces_js_1 = require("../io/interfaces.js");
/** @ignore */ const invalidMessageType = (type) => `Expected ${enum_js_1.MessageHeader[type]} Message in stream, but was null or length 0.`;
/** @ignore */ const nullMessage = (type) => `Header pointer of flatbuffer-encoded ${enum_js_1.MessageHeader[type]} Message is null or length 0.`;
/** @ignore */ const invalidMessageMetadata = (expected, actual) => `Expected to read ${expected} metadata bytes, but only read ${actual}.`;
/** @ignore */ const invalidMessageBodyLength = (expected, actual) => `Expected to read ${expected} bytes for message body, but only read ${actual}.`;
/** @ignore */
class MessageReader {
constructor(source) {
this.source = source instanceof stream_js_1.ByteStream ? source : new stream_js_1.ByteStream(source);
}
[Symbol.iterator]() { return this; }
next() {
let r;
if ((r = this.readMetadataLength()).done) {
return interfaces_js_1.ITERATOR_DONE;
}
// ARROW-6313: If the first 4 bytes are continuation indicator (-1), read
// the next 4 for the 32-bit metadata length. Otherwise, assume this is a
// pre-v0.15 message, where the first 4 bytes are the metadata length.
if ((r.value === -1) &&
(r = this.readMetadataLength()).done) {
return interfaces_js_1.ITERATOR_DONE;
}
if ((r = this.readMetadata(r.value)).done) {
return interfaces_js_1.ITERATOR_DONE;
}
return r;
}
throw(value) { return this.source.throw(value); }
return(value) { return this.source.return(value); }
readMessage(type) {
let r;
if ((r = this.next()).done) {
return null;
}
if ((type != null) && r.value.headerType !== type) {
throw new Error(invalidMessageType(type));
}
return r.value;
}
readMessageBody(bodyLength) {
if (bodyLength <= 0) {
return new Uint8Array(0);
}
const buf = (0, buffer_js_1.toUint8Array)(this.source.read(bodyLength));
if (buf.byteLength < bodyLength) {
throw new Error(invalidMessageBodyLength(bodyLength, buf.byteLength));
}
// 1. Work around bugs in fs.ReadStream's internal Buffer pooling, see: https://github.com/nodejs/node/issues/24817
// 2. Work around https://github.com/whatwg/streams/blob/0ebe4b042e467d9876d80ae045de3843092ad797/reference-implementation/lib/helpers.js#L126
return /* 1. */ (buf.byteOffset % 8 === 0) &&
/* 2. */ (buf.byteOffset + buf.byteLength) <= buf.buffer.byteLength ? buf : buf.slice();
}
readSchema(throwIfNull = false) {
const type = enum_js_1.MessageHeader.Schema;
const message = this.readMessage(type);
const schema = message === null || message === void 0 ? void 0 : message.header();
if (throwIfNull && !schema) {
throw new Error(nullMessage(type));
}
return schema;
}
readMetadataLength() {
const buf = this.source.read(exports.PADDING);
const bb = buf && new flatbuffers_1.ByteBuffer(buf);
const len = (bb === null || bb === void 0 ? void 0 : bb.readInt32(0)) || 0;
return { done: len === 0, value: len };
}
readMetadata(metadataLength) {
const buf = this.source.read(metadataLength);
if (!buf) {
return interfaces_js_1.ITERATOR_DONE;
}
if (buf.byteLength < metadataLength) {
throw new Error(invalidMessageMetadata(metadataLength, buf.byteLength));
}
return { done: false, value: message_js_1.Message.decode(buf) };
}
}
exports.MessageReader = MessageReader;
/** @ignore */
class AsyncMessageReader {
constructor(source, byteLength) {
this.source = source instanceof stream_js_1.AsyncByteStream ? source
: (0, compat_js_1.isFileHandle)(source)
? new file_js_1.AsyncRandomAccessFile(source, byteLength)
: new stream_js_1.AsyncByteStream(source);
}
[Symbol.asyncIterator]() { return this; }
next() {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
let r;
if ((r = yield this.readMetadataLength()).done) {
return interfaces_js_1.ITERATOR_DONE;
}
// ARROW-6313: If the first 4 bytes are continuation indicator (-1), read
// the next 4 for the 32-bit metadata length. Otherwise, assume this is a
// pre-v0.15 message, where the first 4 bytes are the metadata length.
if ((r.value === -1) &&
(r = yield this.readMetadataLength()).done) {
return interfaces_js_1.ITERATOR_DONE;
}
if ((r = yield this.readMetadata(r.value)).done) {
return interfaces_js_1.ITERATOR_DONE;
}
return r;
});
}
throw(value) {
return tslib_1.__awaiter(this, void 0, void 0, function* () { return yield this.source.throw(value); });
}
return(value) {
return tslib_1.__awaiter(this, void 0, void 0, function* () { return yield this.source.return(value); });
}
readMessage(type) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
let r;
if ((r = yield this.next()).done) {
return null;
}
if ((type != null) && r.value.headerType !== type) {
throw new Error(invalidMessageType(type));
}
return r.value;
});
}
readMessageBody(bodyLength) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
if (bodyLength <= 0) {
return new Uint8Array(0);
}
const buf = (0, buffer_js_1.toUint8Array)(yield this.source.read(bodyLength));
if (buf.byteLength < bodyLength) {
throw new Error(invalidMessageBodyLength(bodyLength, buf.byteLength));
}
// 1. Work around bugs in fs.ReadStream's internal Buffer pooling, see: https://github.com/nodejs/node/issues/24817
// 2. Work around https://github.com/whatwg/streams/blob/0ebe4b042e467d9876d80ae045de3843092ad797/reference-implementation/lib/helpers.js#L126
return /* 1. */ (buf.byteOffset % 8 === 0) &&
/* 2. */ (buf.byteOffset + buf.byteLength) <= buf.buffer.byteLength ? buf : buf.slice();
});
}
readSchema(throwIfNull = false) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
const type = enum_js_1.MessageHeader.Schema;
const message = yield this.readMessage(type);
const schema = message === null || message === void 0 ? void 0 : message.header();
if (throwIfNull && !schema) {
throw new Error(nullMessage(type));
}
return schema;
});
}
readMetadataLength() {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
const buf = yield this.source.read(exports.PADDING);
const bb = buf && new flatbuffers_1.ByteBuffer(buf);
const len = (bb === null || bb === void 0 ? void 0 : bb.readInt32(0)) || 0;
return { done: len === 0, value: len };
});
}
readMetadata(metadataLength) {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
const buf = yield this.source.read(metadataLength);
if (!buf) {
return interfaces_js_1.ITERATOR_DONE;
}
if (buf.byteLength < metadataLength) {
throw new Error(invalidMessageMetadata(metadataLength, buf.byteLength));
}
return { done: false, value: message_js_1.Message.decode(buf) };
});
}
}
exports.AsyncMessageReader = AsyncMessageReader;
/** @ignore */
class JSONMessageReader extends MessageReader {
constructor(source) {
super(new Uint8Array(0));
this._schema = false;
this._body = [];
this._batchIndex = 0;
this._dictionaryIndex = 0;
this._json = source instanceof interfaces_js_1.ArrowJSON ? source : new interfaces_js_1.ArrowJSON(source);
}
next() {
const { _json } = this;
if (!this._schema) {
this._schema = true;
const message = message_js_1.Message.fromJSON(_json.schema, enum_js_1.MessageHeader.Schema);
return { done: false, value: message };
}
if (this._dictionaryIndex < _json.dictionaries.length) {
const batch = _json.dictionaries[this._dictionaryIndex++];
this._body = batch['data']['columns'];
const message = message_js_1.Message.fromJSON(batch, enum_js_1.MessageHeader.DictionaryBatch);
return { done: false, value: message };
}
if (this._batchIndex < _json.batches.length) {
const batch = _json.batches[this._batchIndex++];
this._body = batch['columns'];
const message = message_js_1.Message.fromJSON(batch, enum_js_1.MessageHeader.RecordBatch);
return { done: false, value: message };
}
this._body = [];
return interfaces_js_1.ITERATOR_DONE;
}
readMessageBody(_bodyLength) {
return flattenDataSources(this._body);
function flattenDataSources(xs) {
return (xs || []).reduce((buffers, column) => [
...buffers,
...(column['VALIDITY'] && [column['VALIDITY']] || []),
...(column['TYPE'] && [column['TYPE']] || []),
...(column['OFFSET'] && [column['OFFSET']] || []),
...(column['DATA'] && [column['DATA']] || []),
...flattenDataSources(column['children'])
], []);
}
}
readMessage(type) {
let r;
if ((r = this.next()).done) {
return null;
}
if ((type != null) && r.value.headerType !== type) {
throw new Error(invalidMessageType(type));
}
return r.value;
}
readSchema() {
const type = enum_js_1.MessageHeader.Schema;
const message = this.readMessage(type);
const schema = message === null || message === void 0 ? void 0 : message.header();
if (!message || !schema) {
throw new Error(nullMessage(type));
}
return schema;
}
}
exports.JSONMessageReader = JSONMessageReader;
/** @ignore */
exports.PADDING = 4;
/** @ignore */
exports.MAGIC_STR = 'ARROW1';
/** @ignore */
exports.MAGIC = new Uint8Array(exports.MAGIC_STR.length);
for (let i = 0; i < exports.MAGIC_STR.length; i += 1) {
exports.MAGIC[i] = exports.MAGIC_STR.codePointAt(i);
}
/** @ignore */
function checkForMagicArrowString(buffer, index = 0) {
for (let i = -1, n = exports.MAGIC.length; ++i < n;) {
if (exports.MAGIC[i] !== buffer[index + i]) {
return false;
}
}
return true;
}
exports.checkForMagicArrowString = checkForMagicArrowString;
/** @ignore */
exports.magicLength = exports.MAGIC.length;
/** @ignore */
exports.magicAndPadding = exports.magicLength + exports.PADDING;
/** @ignore */
exports.magicX2AndPadding = exports.magicLength * 2 + exports.PADDING;
//# sourceMappingURL=message.js.map