supercat666 commited on
Commit
24d7d26
1 Parent(s): f0489eb
Files changed (1) hide show
  1. cas9on.py +1 -1
cas9on.py CHANGED
@@ -197,7 +197,7 @@ def create_bed_file_from_df(df, output_path):
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  strand = '+' if row["Strand"] == '+' else '-' # Ensure strand is correctly interpreted
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  gRNA = row["gRNA"]
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  score = str(row["Prediction"]) # Ensure score is converted to string if not already
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- transcript_id = row["Transcript ID"] # Extract transcript ID
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  bed_file.write(f"{chrom}\t{start}\t{end}\t{gRNA}\t{score}\t{strand}\t{transcript_id}\n") # Include transcript ID in BED output
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  strand = '+' if row["Strand"] == '+' else '-' # Ensure strand is correctly interpreted
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  gRNA = row["gRNA"]
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  score = str(row["Prediction"]) # Ensure score is converted to string if not already
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+ transcript_id = row["Transcript"] # Extract transcript ID
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  bed_file.write(f"{chrom}\t{start}\t{end}\t{gRNA}\t{score}\t{strand}\t{transcript_id}\n") # Include transcript ID in BED output
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