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import numpy as np | |
def sigma_matrix2(sig_x, sig_y, theta): | |
"""Calculate the rotated sigma matrix (two dimensional matrix). | |
Args: | |
sig_x (float): | |
sig_y (float): | |
theta (float): Radian measurement. | |
Returns: | |
ndarray: Rotated sigma matrix. | |
""" | |
d_matrix = np.array([[sig_x**2, 0], [0, sig_y**2]]) | |
u_matrix = np.array([[np.cos(theta), -np.sin(theta)], [np.sin(theta), np.cos(theta)]]) | |
return np.dot(u_matrix, np.dot(d_matrix, u_matrix.T)) | |
def mesh_grid(kernel_size): | |
"""Generate the mesh grid, centering at zero. | |
Args: | |
kernel_size (int): | |
Returns: | |
xy (ndarray): with the shape (kernel_size, kernel_size, 2) | |
xx (ndarray): with the shape (kernel_size, kernel_size) | |
yy (ndarray): with the shape (kernel_size, kernel_size) | |
""" | |
ax = np.arange(-kernel_size // 2 + 1., kernel_size // 2 + 1.) | |
xx, yy = np.meshgrid(ax, ax) | |
xy = np.hstack((xx.reshape((kernel_size * kernel_size, 1)), yy.reshape(kernel_size * kernel_size, | |
1))).reshape(kernel_size, kernel_size, 2) | |
return xy, xx, yy | |
def pdf2(sigma_matrix, grid): | |
"""Calculate PDF of the bivariate Gaussian distribution. | |
Args: | |
sigma_matrix (ndarray): with the shape (2, 2) | |
grid (ndarray): generated by :func:`mesh_grid`, | |
with the shape (K, K, 2), K is the kernel size. | |
Returns: | |
kernel (ndarrray): un-normalized kernel. | |
""" | |
inverse_sigma = np.linalg.inv(sigma_matrix) | |
kernel = np.exp(-0.5 * np.sum(np.dot(grid, inverse_sigma) * grid, 2)) | |
return kernel | |
def bivariate_Gaussian(kernel_size, sig_x, sig_y, theta, grid=None, isotropic=True): | |
"""Generate a bivariate isotropic or anisotropic Gaussian kernel. | |
In the isotropic mode, only `sig_x` is used. `sig_y` and `theta` is ignored. | |
Args: | |
kernel_size (int): | |
sig_x (float): | |
sig_y (float): | |
theta (float): Radian measurement. | |
grid (ndarray, optional): generated by :func:`mesh_grid`, | |
with the shape (K, K, 2), K is the kernel size. Default: None | |
isotropic (bool): | |
Returns: | |
kernel (ndarray): normalized kernel. | |
""" | |
if grid is None: | |
grid, _, _ = mesh_grid(kernel_size) | |
if isotropic: | |
sigma_matrix = np.array([[sig_x**2, 0], [0, sig_x**2]]) | |
else: | |
sigma_matrix = sigma_matrix2(sig_x, sig_y, theta) | |
kernel = pdf2(sigma_matrix, grid) | |
kernel = kernel / np.sum(kernel) | |
return kernel | |