MIT-Fishery-App / app.py
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# Import necessary libraries
import matplotlib
# Use Agg backend for Matplotlib
matplotlib.use("Agg")
# Libraries for the app
import streamlit as st
import time
import io
import argparse
import sys
import os.path
import subprocess
import tempfile
import logging
import torch
# Visualization libraries
import altair as alt
import av
# Machine Learning and Image Processing libraries
import numpy as np
import pandas as pd
import cv2 as cv
from PIL import Image, ImageOps
from tqdm import tqdm
# Custom modules
import inference
from app_utils import *
from app_plot_utils import *
@st.cache_data
def load_video(video_url):
video_bytes = open(video_url, "rb").read()
return video_bytes
@st.cache_data
def load_historical(fpath):
return pd.read_csv(fpath)
# Define the main function to run the Streamlit app
def run_app():
# Set Streamlit options
st.set_page_config(layout="wide")
st.set_option("deprecation.showfileUploaderEncoding", False)
# App title and description
st.title("MIT Count Fish Counter")
st.text("Upload a video file to detect and count fish")
# Example video URL or file path (replace with actual video URL or file path)
video_url = "yolo2_out_py.mp4"
video_bytes = load_video(video_url)
# Load historical herring
df_historical_herring = load_historical(fpath="herring_count_all.csv")
# Check if GPU is available
gpu_available = torch.cuda.is_available()
mps_available = torch.backends.mps.is_available()
main_tab, upload_tab = st.tabs(["Analysis", "Upload video for analysis"])
with main_tab:
# Create two columns for layout
col1, col2 = st.columns(2)
## Col1 #########################################
with col1:
## Initial visualizations
# Plot historical data
st.altair_chart(
plot_historical_data(df_historical_herring),
use_container_width=True,
)
st.subheader("Yearly Totals (from manual counts)")
st.dataframe(df_historical_herring.groupby(df_historical_herring["Date"].dt.year).sum().T)
# Display map of fishery locations
st.subheader("Map of Fishery Locations")
st.map(
pd.DataFrame(
np.random.randn(5, 2) / [50, 50] + [42.41, -71.38],
columns=["lat", "lon"],
),use_container_width=True)
with col2:
st.subheader("Example of processed video")
st.video(video_bytes)
# Display GPU/CPU information
st.subheader("System Information")
if gpu_available:
st.info("GPU is available.")
elif mps_available:
st.info("MPS is available.")
else:
st.info("Only CPU is available.")
with upload_tab:
process_uploaded_file()
# Run the app if the script is executed directly
if __name__ == "__main__":
run_app()