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Update app.py
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app.py
CHANGED
@@ -156,14 +156,12 @@ def genEntities(ann, entity):
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##======================== Start of NER Tagging ========================
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#lemmatizing the notes to capture all forms of negation(e.g., deny: denies, denying)
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@st.cache
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def lemmatize(note, nlp):
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doc = nlp(note)
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lemNote = [wd.lemma_ for wd in doc]
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return " ".join(lemNote)
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#function to modify options for displacy NER visualization
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@st.cache
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def get_entity_options():
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entities = ["DISEASE", "CHEMICAL", "NEG_ENTITY"]
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colors = {'DISEASE': 'pink', 'CHEMICAL': 'orange', "NEG_ENTITY":'white'}
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##======================== Start of NER Tagging ========================
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#lemmatizing the notes to capture all forms of negation(e.g., deny: denies, denying)
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def lemmatize(note, nlp):
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doc = nlp(note)
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lemNote = [wd.lemma_ for wd in doc]
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return " ".join(lemNote)
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#function to modify options for displacy NER visualization
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def get_entity_options():
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entities = ["DISEASE", "CHEMICAL", "NEG_ENTITY"]
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colors = {'DISEASE': 'pink', 'CHEMICAL': 'orange', "NEG_ENTITY":'white'}
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