carisackc commited on
Commit
f5386b5
·
1 Parent(s): 68183e5

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +5 -8
app.py CHANGED
@@ -24,10 +24,10 @@ if "visibility" not in st.session_state:
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  #nlp = en_core_web_lg.load()
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  nlp = spacy.load("en_ner_bc5cdr_md")
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- st.set_page_config(page_title ='Clinical Note Summarization',
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  #page_icon= "Notes",
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  layout='wide')
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- st.title('Clinical Note Summarization')
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  st.markdown(
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  """
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  <style>
@@ -161,11 +161,8 @@ if btnPastHistory:
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  historyAdmission = df3.query(
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  "Patient_ID == @patient & CHARTDATE_HADM_ID == @pastHistory"
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  )
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- if model == "BertSummarizer":
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- runtext = historyAdmission['BertSummarizer'].values[0]
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- elif model == "t5seq2eq":
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- runtext = historyAdmission['t5seq2eq'].values[0]
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-
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  else:
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  runtext =st.text_area(inputNote, str(original_text2), height=300)
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@@ -353,7 +350,7 @@ else:
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  st.markdown(str(historyAdmission['BertSummarizer'].values[0]))
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  elif model == "t5seq2eq":
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  st.markdown(str(historyAdmission['t5seq2eq'].values[0]))
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- st.markdown('Diagnosis: ' + str(historyAdmission['DIAGNOSIS'].values[0]))
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  st.markdown('**PROBLEM/ISSUE**')
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  st.markdown(f'<p style="background-color:PINK;color:#080808;font-size:16px;">{str(problem_entities)[1:-1]}</p>', unsafe_allow_html=True)
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  st.markdown('**MEDICATION**')
 
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  #nlp = en_core_web_lg.load()
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  nlp = spacy.load("en_ner_bc5cdr_md")
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+ st.set_page_config(page_title ='Patient Inpatient Progression Dashboard',
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  #page_icon= "Notes",
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  layout='wide')
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+ st.title('Patient Inpatient Progression Dashboard')
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  st.markdown(
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  """
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  <style>
 
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  historyAdmission = df3.query(
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  "Patient_ID == @patient & CHARTDATE_HADM_ID == @pastHistory"
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  )
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+ runtext = historyAdmission['TEXT'].values[0]
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+
 
 
 
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  else:
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  runtext =st.text_area(inputNote, str(original_text2), height=300)
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  st.markdown(str(historyAdmission['BertSummarizer'].values[0]))
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  elif model == "t5seq2eq":
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  st.markdown(str(historyAdmission['t5seq2eq'].values[0]))
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+ st.markdown('Diagnosis: ' + str(historyAdmission['Diagnosis_Description'].values[0]))
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  st.markdown('**PROBLEM/ISSUE**')
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  st.markdown(f'<p style="background-color:PINK;color:#080808;font-size:16px;">{str(problem_entities)[1:-1]}</p>', unsafe_allow_html=True)
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  st.markdown('**MEDICATION**')