Wilson-ZheLin
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import nltk
import seaborn as sns
import numpy as np
import pandas as pd
import streamlit as st
import matplotlib.pyplot as plt
import plotly.express as px
import plotly.graph_objects as go
import scipy.stats as stats
from sklearn.decomposition import PCA
from wordcloud import WordCloud
from sklearn.metrics import confusion_matrix
from nltk import regexp_tokenize
# Single attribute visualization
def distribution_histogram(df, attribute):
"""
Histogram of the distribution of a single attribute.
"""
if df[attribute].dtype == 'object' or pd.api.types.is_categorical_dtype(df[attribute]):
codes, uniques = pd.factorize(df[attribute])
temp_df = pd.DataFrame({attribute: codes})
fig, ax = plt.subplots(figsize=(8, 6))
sns.histplot(temp_df[attribute], ax=ax, discrete=True, color='#e17160')
ax.set_xticks(range(len(uniques)))
ax.set_xticklabels(uniques, rotation=45, ha='right')
else:
fig, ax = plt.subplots(figsize=(6, 4))
sns.histplot(df[attribute], ax=ax, color='#e17160')
ax.set_title(f"Distribution of {attribute}")
return fig
def distribution_boxplot(df, attribute):
"""
Boxplot of the distribution of a single attribute.
"""
if df[attribute].dtype == 'object' or pd.api.types.is_categorical_dtype(df[attribute]):
return -1
fig, ax = plt.subplots(figsize=(8, 6))
sns.boxenplot(data=df[attribute], palette=["#32936f", "#26a96c", "#2bc016"])
ax.set_title(f"Boxplot of {attribute}")
return fig
def count_Y(df, Y_name):
"""
Donut chart of the distribution of a single attribute.
"""
if Y_name in df.columns and df[Y_name].nunique() >= 1:
value_counts = df[Y_name].value_counts()
fig = px.pie(names=value_counts.index,
values=value_counts.values,
title=f'Distribution of {Y_name}',
hole=0.5,
color_discrete_sequence=px.colors.sequential.Cividis_r)
return fig
def density_plot(df, column_name):
"""
Density plot of the distribution of a single attribute.
"""
if column_name in df.columns:
fig = px.density_contour(df, x=column_name, y=column_name,
title=f'Density Plot of {column_name}',
color_discrete_sequence=px.colors.sequential.Inferno)
return fig
# Mutiple attribute visualization
def box_plot(df, column_names):
"""
Box plot of multiple attributes.
"""
if len(column_names) > 1 and not all(df[column_names].dtypes.apply(lambda x: np.issubdtype(x, np.number))):
return -1
valid_columns = [col for col in column_names if col in df.columns]
if valid_columns:
fig = px.box(df, y=valid_columns,
title=f'Box Plot of {", ".join(valid_columns)}',
color_discrete_sequence=px.colors.sequential.Cividis_r)
return fig
def violin_plot(df, column_names):
"""
Violin plot of multiple attributes.
"""
if len(column_names) > 1 and not all(df[column_names].dtypes.apply(lambda x: np.issubdtype(x, np.number))):
return -1
valid_columns = [col for col in column_names if col in df.columns]
if valid_columns:
fig = px.violin(df, y=valid_columns,
title=f'Violin Plot of {", ".join(valid_columns)}',
color_discrete_sequence=px.colors.sequential.Cividis_r)
return fig
def strip_plot(df, column_names):
"""
Strip plot of multiple attributes.
"""
if len(column_names) > 1 and not all(df[column_names].dtypes.apply(lambda x: np.issubdtype(x, np.number))):
return -1
valid_columns = [col for col in column_names if col in df.columns]
if valid_columns:
fig = px.strip(df, y=valid_columns,
title=f'Strip Plot of {", ".join(valid_columns)}',
color_discrete_sequence=px.colors.sequential.Cividis_r)
return fig
def multi_plot_scatter(df, selected_attributes):
"""
Scatter plot of multiple attributes.
"""
if len(selected_attributes) < 2:
return -1
plt.figure(figsize=(10, 6))
if df[selected_attributes[0]].dtype not in [np.float64, np.int64]:
x, x_labels = pd.factorize(df[selected_attributes[0]])
plt.xticks(ticks=np.arange(len(x_labels)), labels=x_labels, rotation=45)
else:
x = df[selected_attributes[0]]
if df[selected_attributes[1]].dtype not in [np.float64, np.int64]:
y, y_labels = pd.factorize(df[selected_attributes[1]])
plt.yticks(ticks=np.arange(len(y_labels)), labels=y_labels)
else:
y = df[selected_attributes[1]]
plt.scatter(x, y, c=np.linspace(0, 1, len(df)), cmap='viridis')
plt.colorbar()
plt.xlabel(selected_attributes[0])
plt.ylabel(selected_attributes[1])
plt.title(f'Scatter Plot of {selected_attributes[0]} vs {selected_attributes[1]}')
return plt.gcf()
def multi_plot_line(df, selected_attributes):
"""
Line plot of multiple attributes.
"""
if not all(df[selected_attributes].dtypes.apply(lambda x: np.issubdtype(x, np.number))):
return -1
if len(selected_attributes) >= 2:
plt.figure(figsize=(10, 6))
colors = plt.cm.viridis(np.linspace(0, 1, len(selected_attributes)))
for i, attribute in enumerate(selected_attributes):
plt.plot(df.index, df[attribute], marker='', linewidth=2, color=colors[i], label=attribute)
plt.legend()
plt.xlabel(selected_attributes[0])
plt.ylabel(selected_attributes[1])
plt.title(f'Line Plot of {selected_attributes[0]} vs {selected_attributes[1]}')
return plt.gcf()
else:
return -2
def multi_plot_heatmap(df, selected_attributes):
"""
Correlation heatmap of multiple attributes.
"""
if not all(df[selected_attributes].dtypes.apply(lambda x: np.issubdtype(x, np.number))):
return -1
if len(selected_attributes) >= 1:
sns.set_theme()
plt.figure(figsize=(10, 8))
sns.heatmap(df[selected_attributes].corr(), annot=True, cmap='viridis')
plt.title('Heatmap of Correlation')
return plt.gcf()
# Overall visualization
@st.cache_data
def correlation_matrix(df):
"""
Correlation heatmap of all attributes using Seaborn.
"""
plt.figure(figsize=(16, 12))
sns.set(font_scale=0.9)
sns.heatmap(df.corr(), annot=True, cmap='viridis', annot_kws={"size": 12})
return plt.gcf()
@st.cache_data
def correlation_matrix_plotly(df):
"""
Correlation heatmap of all attributes using Plotly.
"""
corr_matrix = df.corr()
labels = corr_matrix.columns
text = [[f'{corr_matrix.iloc[i, j]:.2f}' for j in range(len(labels))] for i in range(len(labels))]
fig = go.Figure(data=go.Heatmap(
z=corr_matrix.values,
x=labels,
y=labels,
colorscale='Viridis',
colorbar=dict(title='Correlation'),
text=text,
hoverinfo='text',
))
fig.update_layout(
title='Correlation Matrix Between Attributes',
xaxis=dict(tickmode='linear'),
yaxis=dict(tickmode='linear'),
width=800,
height=700,
)
fig.update_layout(font=dict(size=10))
return fig
@st.cache_data
def list_all(df, max_plots=16):
"""
Display histograms of all attributes in the DataFrame.
"""
# Calculate the number of plots to display (up to 16)
num_plots = min(len(df.columns), max_plots)
nrows = int(np.ceil(num_plots / 4))
ncols = min(num_plots, 4)
fig, axes = plt.subplots(nrows, ncols, figsize=(4 * ncols, 4 * nrows))
fig.suptitle('Attribute Distributions', fontsize=20)
plt.style.use('ggplot')
sns.set(style="darkgrid")
# if only one plot, convert to list
if num_plots == 1: axes = [axes]
# Flatten the axes array
axes = axes.flatten()
# Display the histograms
for i, column in enumerate(df.columns[:num_plots]):
sns.histplot(ax=axes[i], data=df, x=column, color='#1867ac')
# Hide additional subplots
for ax in axes[num_plots:]: ax.axis('off')
plt.tight_layout()
plt.subplots_adjust(top=0.95) # Adjust the top to accommodate the title
return fig
# Model evaluation
def confusion_metrix(model_name, model, X_test, Y_test):
"""
Confusion matrix plot for classification models
"""
Y_pred = model.predict(X_test)
matrix = confusion_matrix(Y_test, Y_pred)
plt.figure(figsize=(10, 7)) # temporary
sns_heatmap = sns.heatmap(matrix, annot=True, cmap='Blues', fmt='g', annot_kws={"size": 20})
plt.title(f"Confusion Matrix for {model_name}", fontsize=20)
plt.xlabel('Predicted labels', fontsize=16)
plt.ylabel('True labels', fontsize=16)
return sns_heatmap.figure
def roc(model_name, fpr, tpr):
"""
ROC curve for classification models
"""
fig = plt.figure()
plt.style.use('ggplot')
plt.plot([0,1],[0,1],'k--')
plt.plot(fpr, tpr, label=model_name)
plt.xlabel('False Positive rate')
plt.ylabel('True Positive rate')
plt.title(f'ROC Curve - {model_name}')
plt.legend(loc='best')
plt.xticks(rotation=45)
return fig
def plot_clusters(X, labels):
"""
Scatter plot of clusters for clustering models
"""
sns.set(style="whitegrid")
pca = PCA(n_components=2)
X_pca = pca.fit_transform(X)
unique_labels = set(labels)
colors = plt.cm.viridis(np.linspace(0, 1, len(unique_labels)))
fig, ax = plt.subplots()
for color, label in zip(colors, unique_labels):
idx = labels == label
ax.scatter(X_pca[idx, 0], X_pca[idx, 1], color=color, label=f'Cluster {label}', s=50)
ax.set_title('Cluster Scatter Plot')
ax.legend()
return fig
def plot_residuals(y_pred, Y_test):
"""
Residual plot for regression models
"""
residuals = Y_test - y_pred
fig, ax = plt.subplots()
sns.residplot(x=y_pred, y=residuals, lowess=True, ax=ax, scatter_kws={'alpha': 0.7}, line_kws={'color': 'purple', 'lw': 2})
ax.set_xlabel('Predicted Values')
ax.set_ylabel('Residuals')
ax.set_title('Residual Plot')
return fig
def plot_predictions_vs_actual(y_pred, Y_test):
"""
Scatter plot of predicted vs. actual values for regression models
"""
fig, ax = plt.subplots()
ax.scatter(Y_test, y_pred, c='#10a37f', marker='x')
ax.plot([Y_test.min(), Y_test.max()], [Y_test.min(), Y_test.max()], 'k--', lw=2)
ax.set_xlabel('Actual')
ax.set_ylabel('Predicted')
ax.set_title('Actual vs. Predicted')
ax.set_facecolor('white')
ax.grid(True, which='major', linestyle='--', linewidth=0.5, color='gray')
ax.spines['top'].set_visible(False)
ax.spines['right'].set_visible(False)
return fig
def plot_qq_plot(y_pred, Y_test):
"""
Quantile-Quantile plot for regression models
"""
residuals = Y_test - y_pred
fig, ax = plt.subplots()
(osm, osr), (slope, intercept, r) = stats.probplot(residuals, dist="norm", plot=None)
line = slope * osm + intercept
ax.plot(osm, line, 'grey', lw=2)
ax.scatter(osm, osr, alpha=0.8, edgecolors='#e8b517', c='yellow', label='Data Points')
ax.set_title('Quantile-Quantile Plot')
ax.set_facecolor('white')
ax.grid(True, which='major', linestyle='--', linewidth=0.5, color='gray')
ax.spines['top'].set_visible(False)
ax.spines['right'].set_visible(False)
ax.set_xlabel('Theoretical Quantiles')
ax.set_ylabel('Ordered Values')
return fig
# Advanced Visualization
@st.cache_data
def word_cloud_plot(text):
"""
Generates and displays a word cloud from the given text.
The word cloud visualizes the frequency of occurrence of words in the text, with the size of each word indicating its frequency.
:param text: The input text from which to generate the word cloud.
:return: A matplotlib figure object containing the word cloud if successful, -1 otherwise.
"""
try:
words = regexp_tokenize(text, pattern='\w+')
text_dist = nltk.FreqDist([w for w in words])
wordcloud = WordCloud(width=1200, height=600, background_color ='white').generate_from_frequencies(text_dist)
fig, ax = plt.subplots(figsize=(10, 7.5))
ax.imshow(wordcloud, interpolation='bilinear')
ax.axis('off')
return fig
except:
return -1
@st.cache_data
def world_map(df, country_column, key_attribute):
"""
Creates a choropleth world map visualization based on the specified DataFrame.
The function highlights countries based on a key attribute, providing an interactive map that can be used to analyze geographical data distributions.
:param df: DataFrame containing the data to be visualized.
:param country_column: Name of the column in df that contains country names.
:param key_attribute: Name of the column in df that contains the data to visualize on the map.
:return: A Plotly figure object representing the choropleth map if successful, -1 otherwise.
"""
try:
hover_data_columns = [col for col in df.columns if col != country_column]
fig = px.choropleth(df, locations="iso_alpha",
color=key_attribute,
hover_name=country_column,
hover_data=hover_data_columns,
color_continuous_scale=px.colors.sequential.Cividis,
projection="equirectangular",)
return fig
except:
return -1
@st.cache_data
def scatter_3d(df, x, y, z):
"""
Generates a 3D scatter plot from the given DataFrame.
Each point in the plot corresponds to a row in the DataFrame, with its position determined by three specified columns. Points are colored based on the values of the z-axis.
:param df: DataFrame containing the data to be visualized.
:param x: Name of the column in df to use for the x-axis values.
:param y: Name of the column in df to use for the y-axis values.
:param z: Name of the column in df to use for the z-axis values and color coding.
:return: A Plotly figure object containing the 3D scatter plot if successful, -1 otherwise.
"""
try:
return px.scatter_3d(df, x=x, y=y, z=z, color=z, color_continuous_scale=px.colors.sequential.Viridis)
except:
return -1