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Upload example.fasta
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example.fasta
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1 |
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>NC_034616.1 |Human papillomavirus type 85 isolate 114B, complete genome
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2 |
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CTTATACTTTTTTATAATTTTATTACTGAAAAGGGTGTAACCGAAAACGGTCATGACCGA
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3 |
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AATCGGTGCATATATATAACCCAGCTTACAGTACATGTAATAGGATGGCTGAATTTGGCA
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4 |
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ATCCAGCTACCCGACCCTACAAACTACCAGACCTATGCAACACACTGGACACATCACTGC
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5 |
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AAGATATAGAAATAAGCTGTGTATATTGTAAAAGCGTCCTGCAGCGAACAGAGGTATATG
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6 |
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AATTTGCCTTTGCTGATTTATTTGTAGTATATAGAGACGGTATACCATATGCAGCATGTC
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7 |
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AGAACTGTTTAATGTTTTATTCTAAAATAAGAGAACTAAGATATTATAGCGACTCTGTGT
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8 |
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ATGGGGAAACGTTAGAAAAACTAACAAATAGCAATATATATGATATATTAATAAGGTGTT
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9 |
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TACGGTGTCAAAAACCTTTATGTCCGGCAGAAAAACTAAAACACCTTAATGAAAAACGAA
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10 |
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GATTCCATAAAATAGCAGGGAAATATAGAGGACAGTGTCGCCGGTGCATGACGCGTGCAC
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11 |
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AAGAACAGCAAGGCAGCCGCAGAGAAACACAAGTATAAGGGTCGCTATGCATGGACCAAA
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12 |
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ACCTACTGTACATGACATTGTGTTAGATTTGGAACCATATAATGAAGTGCAAGAGGTTGA
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13 |
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CCTGTATTGCTATGAGGAATTAAACAACTCAGAGGAAGAAATAGATGAACCAGATAATGC
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14 |
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AATTAATCACCGACAACCACTACTAGCCAGACGAGAAGAACTACAGCGTCACACTATTTG
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15 |
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CTGCGTGTGTTGTAAATGTGAGGCCAGTCTGCAGTTAGTGGTGGAAAGTTCAGCAGCCGA
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16 |
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TCTACGAGATCTCCAGCAGCTGTTTTTGGGCACGCTATCATTTTTGTGTCCACTGTGTGC
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17 |
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AGTACTGCGGTAAGCTGCAATGGCCGACCCTGAAGGTACAGATGGGGATGGGACGGGATG
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18 |
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TAATGGTTGGTTTTTTGTGCAGGCAATAGTAGACAAAAAAACAGGTGACACCATATCAGA
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19 |
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GGATGAGGACGAGGACGGGACAGATACAGGTTCAGACTTGGTAGATTTTATTGACACTAG
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20 |
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TAATACAAATTATATGCAGGCAGATAGAGAGGCAGCACAAGCGCTATTACATGCACAGGA
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21 |
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AGTAGAAACTGATACAAAGCTATTACATGCCTTAAAACGAAAGTATGGAGCACACAGCAC
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22 |
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AGAAAACAGTCCATGTCGTGATACAGCAAGTATACATAGCAATTTAAGCTCACCATTACA
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23 |
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AGAAATATCGTTAAATAGCTATAATAATACAGCTAAACGAAGGCTGTGTTCAGTGCCAGA
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24 |
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CAGCGGCTATGGCAATACTCAAGTGGAAACTCTGCAGACTCAGGTAACCCTAGATACAAA
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25 |
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TGTGTTTGGGGATGGGAAAAATGGCGACGGTTTAAATAGTGAGGCATGTAGTACAGATAA
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26 |
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TGAAATGGATATAGAAAATCAAAATCCAAACTCACCAATGACACAAATTGTGTCCTTATT
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27 |
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AAAAGTAAATAATAAAAAAGCAGCAATATTGGCTAAATTTAAAGAAACATATGGATTGTC
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28 |
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ATTTACAGATTTGGTACGAACATTTAAAAGTGATAAAACAACATGTACAGATTGGGTAGC
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29 |
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CGCTATTTGTGGAGTAAATCCAAATATTGCAGAAGGATTTAAAACGTTAATACAACCATA
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30 |
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TGTGTTATATGCACATATACAATGCATGGATTGTTCATGGGGAGTATTTATATTAGCTTT
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31 |
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ATTAAGATATAAATGTGGCAAAAATAGACTAACTGTAGCTAAAGNNNNNNGTACATTACT
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32 |
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ACATGTACCAGATACCCATATGTTAATTGAGCCACCAAAACTGCGTAGCAGTGTTGCAGC
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33 |
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ACTATATTGGTATAGGACAGGAATATCAAATATTAGTGAAGTAACAGGAGACACACCTGA
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34 |
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GTGGATACAAAGACAAACTATTATACAACATGGTATAGATGACAGTGTATTTGACCTGTC
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35 |
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AGAAATGATACAGTGGGCGTTTGATAATGACTATATAGATGAAAGTGACATAGCATATGA
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36 |
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ATATGCACAGTTAGCTGATTGTAATAGTAATGCAGCAGCATTTTTAAAAAGTAATTGTCA
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37 |
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AGCTAAATACTTACGAGATTGTGCAGTTATGTGTAGACATTATAAAAGGGCACAACGAAA
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38 |
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GCANNNNNNNNNNNNNNNNNNNNNNNGTTATAGATGTGACAAAATTGATGATGGAGGTGA
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39 |
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TTGGAAACCTATTGTACAATTTTTAAGATTTCAAGGAATAGAGTTTATTACATTTTTAAG
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40 |
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AGCATTTAAAGACTTTTTAAAAGGAACACCAAAAAAAAATTGTATTGTTATATATGGACC
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41 |
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AGCAAATACAGGCAAATCATATTTTTGTATGAGTCTTATACAATTTTTACATGGTACAGT
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42 |
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GTTGTCATTTGTAAATTCAAACAGCCATTTTTGGCTGGAACCGTTAACAGACACTAAGAT
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43 |
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AGCTATGGTAGATGATGCAACACCAACATGCTGGTCCTATTTTGATAATTATATGAGAAA
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44 |
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TGCATTAGATGGCAATCCAATAAGTATAGATAGAAAACATAAACATTTAATACAAATGAA
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45 |
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GTGTCCACCAATGCTAATTACATCTAATACAAATCCTGCAACAGATGATAGATGGCCTTA
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46 |
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TTTACGAAGTAGGGTAACAGTATTTACATTTCCACATACATTTCCATTTGATAGCAATGG
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47 |
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CAATCCAGTGTATGACATAAATGATAAAAATTGGAAATGTTTCTTTAAAAGGACGTGGTC
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48 |
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CAGATTAGATTTGCACCAGGAAGAGGAGGATACAGAAAATGATGGATGCCCTATCCCAAC
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49 |
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GTTTAAATGTGTTACAGGAAAAGATTCTAGAACATTACGAGACTGATAGTACAGACATAT
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50 |
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GTGATCAAATAGACTATTGGAAGTGTGTACGTCTGGAAAATGCAATATATTATGCAGCAA
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51 |
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GGGAGCATGGTCTTAAAACAATAAACCACCACGTGGTACCAACATTTCAAATTTCAAAAA
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52 |
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GCAAAGCACATGAAGCAATTGAACTGCAGATGGCACTAGAGAGTCTTGCTAAATCAGAGT
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53 |
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TTAAAAATGAACTGTGGACATTGCAAGATACGTGCCAAGAACTATATCAAACACCTCCAC
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54 |
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AACAGTGTTTTAAAAAACAGGGACAAACCGTTGAAGTACGGTATGATGGAGACAAAGACA
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55 |
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ATACTATGCATTATACATCTTGGGACTATATATATTATGTAACAGAAGGTGATAAGTGGT
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56 |
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GTAAAACCAAAGGTTATGTGAATTATTGTGGATTGTATTATATAAAGGAGGGACAACAAA
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57 |
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CATATTATGTACAGTTTAAATGTGATGCACAACAATATGGACAGAGCGGTAAATGGGAAG
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58 |
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TGTGGTATAATGGTAAAAAAATTGAATGTGTAAATACCTGTGACAAAATAATACAATGTT
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59 |
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CTGAATCTATGTACAGTACCTGTGACGAGACAGTATCCGCTACTGCAATTGCTAGAGAAT
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60 |
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TACAACACCCCACCACACCGTATACCGAAGCCACCACCGTGTGCACCCAAAAGAGTGGGG
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61 |
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GTTCGGCGCCGACTAGAAAACCATTCAGACATTGTGGATTCACAGAAACAAGTGAAGTCG
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62 |
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ACGGACTGTCCGTGGACCACCTCAACAACCCCCTGCTTAGTGCACCTGCAGGCAACAACG
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63 |
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GGTTCAGGAAGCACAATAGTGGTGACACTACGCCTATAGTGCACCTAAAAGGTGATAAAA
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64 |
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ATAGATTAAAGTGTTTGCGATACAGGCTACAAAAGTTCCATAATTTATATACACAAATAT
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65 |
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CATGTACGTGGCATTGGATAGGTGGTAAAGAAACAACAAGGACTGGTATNNNNNNNNNNN
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66 |
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NNNATGCAAATGAAACCCAAAGACAAAAATTTTTGGATGTTGTAAAAATACCTAATACTG
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67 |
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TTAATGTATCCCTTGGTTATATGACATTGTAATAGGGGTATGTTAATTGCTGTATTTTTG
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68 |
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TTGTGCTTTTGTGTGTGCCTATATGTGTGTTGCACTATTCCGCTTTTTCCTGCTACTAAT
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69 |
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GTGTGTGCGCATGCTTGGCTACTTGTGTTTTTGTTAATAGTTTTTATTACTACCCCTTTT
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70 |
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ACTGCATTTATTGTATATATATTTTTTTTTATATTGCCAATGTTTTTATTGCATTTGCAC
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71 |
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AGTGTAAATACATTTGACTAAGTACTATATAACCTGTATTGTACAGGACATTACATTGGT
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72 |
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AGTGTAATACCTTTTTGTAATAAACATGGTATCCCATCGTGCTGCCCGTCGAAAGCGTGC
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73 |
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ATCTGCAACGGATTTGTATAAAACATGTAAACAATCGGGTACATGCCCTCCAGATGTTAT
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74 |
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TAATAAGGTTGAAGGTACTACTCTTGCAGATAAACTATTACAATGGACTAGTTTGGGAAT
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75 |
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ATTTTTAGGAGGCCTTGGAATAGGTACTGGTAGTGGCACAGGGGGGCGTACCGGCTATAT
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76 |
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TCCATTGGGTGGCAGACCTAATACTGTTGTTGATGTGTCTCCTGCAAGGCCACCTGTTGT
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77 |
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AATTGAATCTGTGGGGCCTTCAGATCCATCTATTGTTACATTAGTTGAAGAGTCCAGTAT
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78 |
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TGTTACATCTGGAGCTCCTGTTCCTACATTTACAGGCACATCTGGATTTGAAATTACATC
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79 |
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CTCTGCAACAACCACCCCTGCAGTATTAGACATTACACCTGCTTCTGGGTCTGTGCAACT
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80 |
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AAGTAGCACTAGTTTTACCAATCCTGCATTTACCGACCCTTCGGTTATTGAGGTTCCTCA
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81 |
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AACAGGGGAGGTGTCTGGAGATATTTTTATTACTACCCCTACATCTGGGACACATGGATA
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82 |
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CGAGGAAATTCCAATGCACACATTTGCAACACAGGGCAGAGGCACCGAACCTATTAGTAG
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83 |
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TACCCCTATTCCTGGTGTTAGGCGTGTGGCAGGACCTAGATTATATAGTCAAGCTTATCA
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84 |
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ACAAGTTAAAATAACTAATTCAGACTTTATATCCCGTCCATCTACGTTGGTTACATTTAC
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85 |
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CAATCCTGCATATGAGCCTATAGACACTACATTAACCTTTTCACCACAGGATGTTGTGCC
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86 |
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TGATCCTGATTTTATGGATATTGTTCGTTTACATAGGCCTGCCTTAACATCCAGACGTGG
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87 |
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TACAGTTAGATTTAGTAGATTGGGTAAAAAACTAACTATGTCTACTCGCAGTGGTAAACA
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88 |
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AATAGGTGCCCAGGTGCATTATTATCATGATATTAGTCCTATTTNNNNNNNNNNNNNNNG
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89 |
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TATTGAAATGCAGCCTTTACTGCCTGATGCAGCAGTTACTGCTGACACTAATGGCCTCTT
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90 |
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TGACATTTATGCTGACACTGATATTGATAATAATGCCATGCTATATGATAGAAATATTTC
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91 |
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TGATGTTACACAACCTACCACTTCAACTATATCTAGTGTATCCTCTCGTTATAGTAATAC
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92 |
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TACTATTCCTTTAGCAACATCTTGGGATGTTCCTGTTCATACAGGGCCTGACATGACATT
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93 |
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ACCTACTACTATACCCCAGTGGCCTAATATAGTACCTTTACTGCCTAATAATACACATTC
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94 |
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AGTTGTACTTCAGGGAACAAACTATTATTTATGGCCTAATTATTATTTTATTTTCAAAAA
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95 |
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ACGTAAACGTGTTCCCTATTTTCTTACAGATGGCTTTGTGGCGTTCTAGTGACAGCAAGG
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96 |
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TATACCTTCCACCACCTTCAGTGGCTAAAGTTGTCAACACAGACGATTATGTAACACGTA
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97 |
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CCAGTACATTTTATCATGCTGGCAGCTCTAGGCTTCTAACCGTTGGACATCCATACTATA
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98 |
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AAGTTACCTCAAATGGAGGCCGCAAGCAAGACATTCCTAAAGTGTCTGCCTATCAGTATC
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99 |
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GAGTGTTTCGGGTTACATTACCTGACCCTAATAAATTTGGTCTTCCAGACACTAATATAT
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100 |
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ATAATCCTGAAACACAACGTTTAGTATGGGCCTGTGTTGGCATGGAGGTAGGTCGTGGGC
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101 |
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AGCCTTTAGGTGTTAGCCTTAGTGGTCATCCCTTTTACAACAAATTGGATGACACAGAAA
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102 |
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ATTCCCATGTTGCTACTTCTGTAGTTACACACGACACTAGAGATAATGTGTCAGTGGATT
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103 |
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ATAAACAAACCCAGTTATGTATTATTGGTTGTGTTCCTGCTATTGGGGAACATTGGGCTA
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104 |
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AGGGTACTGCCTGTAAGCCCGGTGCTGTGCAAACAGGTGACTGTCCTCCATTAGAACTAG
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105 |
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TAAATACACCTATTGAGGATGGTGATATGATTGATACTGGCTATGGTGCTATGGACTTTA
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106 |
+
GTACTTTGCAGGATAATAAAAGTGAGGTTCCCTTAGACATTTGTCAATCTATTTGTAAAT
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107 |
+
ATCCAGACTATTTGCAAATGTCTGCAGATGCATATGGGGACAGTATGTTTTTTTGTTTAC
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108 |
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GACGCGAACAGTTATTTGCACGCCATTTTTGGAACAGGGGAGGCACTATAGGAGATGCAG
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109 |
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TACCGGAAACATTATATATAAAAGGTACTAATGATAGGGCAACACCTGGAAGCTGTATTT
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110 |
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ATTCTCCATCACCTAGTGGGTCTATGGTATCTTCAGATGCACAAATGTTTAATAAGCCTT
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111 |
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ATTGGCTGCACAAAGCCCAGGGACAAAATAATGGCATTTGCTGGCACAACCAATTATTTA
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112 |
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TAACTGTGGTAGACACAACACGTAGTACCAATCTTACCTTATCTACTGCAACTACTAATC
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113 |
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CAGTTCCATCTATATATGAACCTTCTAAATTTAAGGAATACACACGCCATGTAGAGGAAT
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114 |
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ATGATTTACAATTTATATTTCAATTGTGTAAAATTACACTTACTACTGATGTTATGTCTT
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115 |
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ATATACATAACATGGATCCTACTATTTTAGATAGTTGGAATTTTGGTGTTAGTCCTCCCC
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116 |
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CATCTGCTAGCTTAGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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117 |
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NNNNNGTGGTTGTTCCACAAAAAAAGGATCCATATGAAAAATTAAAGTTTTGGAATGTGG
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118 |
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ATCTTAAAGAACATTTTTCATCTGATTTAGATCAGTTTCCTTTAGGACGTAAGTTTTTAT
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119 |
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TACAGGCTGGGTTACGACCTAAACNNNCCATAGGCCCTAGGAAACGTGTTGCTTCTACTT
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120 |
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CTACTGCTACTAGGCCCTCCAAACGGAAACGTACTGCTAAATAATGTGTTGTGTATAATT
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121 |
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GTGTTGTTTGTTTTGTTATATGTGTGTTCCTTATATGTTGTGTGCATGTTTGTATGGTTA
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122 |
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TGTGTATGTTTGTATCATGTGTAAGTAATGTGTGTATTGTATGTGTTTAATAAAGTATGT
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123 |
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GTGTTAGTTTCGTGTGTGGTTGCACCCAAATGAGTAAGAGACTGTCCCTTTATTATCCCT
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124 |
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TGTATCCTGTGTATCCTGTGTGCCCTTTGTTCCTACTTTATATAGGGTGTGTTATATGTT
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125 |
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ATACATTATTTATAATACACTTTGTAGCGTCCATTTTATCCATTTGTATCCTACAAGCCT
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126 |
+
CCATTTTACTATGCAACCGATATCGGTTGCCTTTGACACACCTAACATTATACATTCTTA
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127 |
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TTGTTACATTATTTAAAGTTAAATCCTTTTTGGCTCTGTTTAAGGCGCCAGTGAGCCAGT
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128 |
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GGCGCACCTTATATTACTCATCATCCTGTCCAGGTGCACTGCAACAATGGTTTGCAAAAC
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129 |
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CTTGTTTTACCCTTACATAATAAAACTGCTTTTAGGCACATATTTTCACTGTTTTTACTT
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130 |
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GCTTTAATTACACTATTGGCCTGTACAACTACTTTTAGATTCAAGAATGTGTCTTGTAGG
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131 |
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TTATATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCCTT
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132 |
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ACACATTATATA
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133 |
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