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DmitriiKhizbullin commited on
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Added environment.yml

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Files changed (2) hide show
  1. README.md +8 -1
  2. environment.yml +249 -18
README.md CHANGED
@@ -1 +1,8 @@
1
- # diabetic-retinopathy-detection
 
 
 
 
 
 
 
 
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+ # diabetic-retinopathy-detection
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+
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+ # Installataion
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+
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+ Create conda environment from YAML:
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+ ```bash
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+ mamba env create -n retinopathy_restore -f environment.yml
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+ ```
environment.yml CHANGED
@@ -1,22 +1,253 @@
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- name: diabetic-retinopathy-detection
2
-
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  channels:
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- - pytorch
5
- - nvidia
6
  - conda-forge
7
  - defaults
8
-
9
  dependencies:
10
- - dask
11
- - gh
12
- - git
13
- - kaggle
14
- - jupyterlab
15
- - jupyterlab-nvdashboard
16
- - lightning
17
- - nbgitpuller
18
- - pytorch
19
- - pytorch-cuda=11.8
20
- - scikit-learn
21
- - torchvision
22
-
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: retinopathy
 
2
  channels:
3
+ - anaconda
 
4
  - conda-forge
5
  - defaults
 
6
  dependencies:
7
+ - _libgcc_mutex=0.1=main
8
+ - _openmp_mutex=5.1=1_gnu
9
+ - aiofiles=22.1.0=py310h06a4308_0
10
+ - aiosqlite=0.18.0=py310h06a4308_0
11
+ - argon2-cffi=21.3.0=pyhd3eb1b0_0
12
+ - argon2-cffi-bindings=21.2.0=py310h7f8727e_0
13
+ - asttokens=2.0.5=pyhd3eb1b0_0
14
+ - attrs=23.1.0=py310h06a4308_0
15
+ - babel=2.11.0=py310h06a4308_0
16
+ - backcall=0.2.0=pyhd3eb1b0_0
17
+ - beautifulsoup4=4.12.2=py310h06a4308_0
18
+ - bleach=4.1.0=pyhd3eb1b0_0
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+ - brotli-python=1.0.9=py310h6a678d5_7
20
+ - bzip2=1.0.8=h7b6447c_0
21
+ - ca-certificates=2023.08.22=h06a4308_0
22
+ - certifi=2023.11.17=py310h06a4308_0
23
+ - cffi=1.16.0=py310h5eee18b_0
24
+ - comm=0.1.2=py310h06a4308_0
25
+ - cryptography=41.0.3=py310hdda0065_0
26
+ - debugpy=1.6.7=py310h6a678d5_0
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+ - decorator=5.1.1=pyhd3eb1b0_0
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+ - defusedxml=0.7.1=pyhd3eb1b0_0
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+ - executing=0.8.3=pyhd3eb1b0_0
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+ - ipykernel=6.25.0=py310h2f386ee_0
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+ - ipython=8.15.0=py310h06a4308_0
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+ - ipython_genutils=0.2.0=pyhd3eb1b0_1
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+ - jedi=0.18.1=py310h06a4308_1
34
+ - jinja2=3.1.2=py310h06a4308_0
35
+ - json5=0.9.6=pyhd3eb1b0_0
36
+ - jsonschema=4.19.2=py310h06a4308_0
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+ - jsonschema-specifications=2023.7.1=py310h06a4308_0
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+ - jupyter_client=8.6.0=py310h06a4308_0
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+ - jupyter_core=5.5.0=py310h06a4308_0
40
+ - jupyter_events=0.8.0=py310h06a4308_0
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+ - jupyter_server=2.10.0=py310h06a4308_0
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+ - jupyter_server_fileid=0.9.0=py310h06a4308_0
43
+ - jupyter_server_terminals=0.4.4=py310h06a4308_1
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+ - jupyter_server_ydoc=0.8.0=py310h06a4308_1
45
+ - jupyter_ydoc=0.2.4=py310h06a4308_0
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+ - jupyterlab=3.6.3=py310h06a4308_0
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+ - jupyterlab_pygments=0.2.2=py310h06a4308_0
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+ - jupyterlab_server=2.25.1=py310h06a4308_0
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+ - ld_impl_linux-64=2.38=h1181459_1
50
+ - libffi=3.4.4=h6a678d5_0
51
+ - libgcc-ng=11.2.0=h1234567_1
52
+ - libgomp=11.2.0=h1234567_1
53
+ - libsodium=1.0.18=h7b6447c_0
54
+ - libstdcxx-ng=11.2.0=h1234567_1
55
+ - libuuid=1.41.5=h5eee18b_0
56
+ - matplotlib-inline=0.1.6=py310h06a4308_0
57
+ - mistune=2.0.4=py310h06a4308_0
58
+ - nbclassic=1.0.0=py310h06a4308_0
59
+ - nbclient=0.8.0=py310h06a4308_0
60
+ - nbconvert=7.10.0=py310h06a4308_0
61
+ - nbformat=5.9.2=py310h06a4308_0
62
+ - ncurses=6.4=h6a678d5_0
63
+ - nest-asyncio=1.5.6=py310h06a4308_0
64
+ - notebook=6.5.4=py310h06a4308_0
65
+ - notebook-shim=0.2.3=py310h06a4308_0
66
+ - openssl=3.0.12=h7f8727e_0
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+ - overrides=7.4.0=py310h06a4308_0
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+ - pandocfilters=1.5.0=pyhd3eb1b0_0
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+ - parso=0.8.3=pyhd3eb1b0_0
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+ - pexpect=4.8.0=pyhd3eb1b0_3
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+ - pickleshare=0.7.5=pyhd3eb1b0_1003
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+ - pip=23.3.1=py310h06a4308_0
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+ - platformdirs=3.10.0=py310h06a4308_0
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+ - prometheus_client=0.14.1=py310h06a4308_0
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+ - prompt-toolkit=3.0.36=py310h06a4308_0
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+ - ptyprocess=0.7.0=pyhd3eb1b0_2
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+ - pure_eval=0.2.2=pyhd3eb1b0_0
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+ - pycparser=2.21=pyhd3eb1b0_0
79
+ - pyopenssl=23.2.0=py310h06a4308_0
80
+ - pysocks=1.7.1=py310h06a4308_0
81
+ - python=3.10.13=h955ad1f_0
82
+ - python-dateutil=2.8.2=pyhd3eb1b0_0
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+ - python-fastjsonschema=2.16.2=py310h06a4308_0
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+ - python-json-logger=2.0.7=py310h06a4308_0
85
+ - pytz=2023.3.post1=py310h06a4308_0
86
+ - pyyaml=6.0.1=py310h5eee18b_0
87
+ - pyzmq=25.1.0=py310h6a678d5_0
88
+ - readline=8.2=h5eee18b_0
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+ - referencing=0.30.2=py310h06a4308_0
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+ - requests=2.31.0=py310h06a4308_0
91
+ - rfc3339-validator=0.1.4=py310h06a4308_0
92
+ - rfc3986-validator=0.1.1=py310h06a4308_0
93
+ - rpds-py=0.10.6=py310hb02cf49_0
94
+ - send2trash=1.8.2=py310h06a4308_0
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+ - setuptools=68.0.0=py310h06a4308_0
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+ - six=1.16.0=pyhd3eb1b0_1
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+ - soupsieve=2.5=py310h06a4308_0
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+ - sqlite=3.41.2=h5eee18b_0
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+ - stack_data=0.2.0=pyhd3eb1b0_0
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+ - terminado=0.17.1=py310h06a4308_0
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+ - tinycss2=1.2.1=py310h06a4308_0
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+ - tk=8.6.12=h1ccaba5_0
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+ - tomli=2.0.1=py310h06a4308_0
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+ - tornado=6.3.3=py310h5eee18b_0
105
+ - webencodings=0.5.1=py310h06a4308_1
106
+ - wheel=0.41.2=py310h06a4308_0
107
+ - xz=5.4.5=h5eee18b_0
108
+ - y-py=0.5.9=py310h52d8a92_0
109
+ - yaml=0.2.5=h7b6447c_0
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+ - ypy-websocket=0.8.2=py310h06a4308_0
111
+ - zeromq=4.3.4=h2531618_0
112
+ - zlib=1.2.13=h5eee18b_0
113
+ - pip:
114
+ - absl-py==2.0.0
115
+ - aiobotocore==2.8.0
116
+ - aiohttp==3.9.1
117
+ - aioitertools==0.11.0
118
+ - aiosignal==1.3.1
119
+ - altair==5.2.0
120
+ - annotated-types==0.6.0
121
+ - antlr4-python3-runtime==4.9.3
122
+ - anyio==3.7.1
123
+ - arrow==1.3.0
124
+ - async-timeout==4.0.3
125
+ - backoff==2.2.1
126
+ - bitsandbytes==0.41.3
127
+ - blessed==1.20.0
128
+ - boto3==1.33.1
129
+ - botocore==1.33.1
130
+ - cachetools==5.3.2
131
+ - chardet==5.2.0
132
+ - charset-normalizer==3.3.2
133
+ - click==8.1.7
134
+ - colorama==0.4.6
135
+ - contourpy==1.2.0
136
+ - croniter==1.4.1
137
+ - cycler==0.12.1
138
+ - dateutils==0.6.12
139
+ - deepdiff==6.7.1
140
+ - docker==6.1.3
141
+ - docstring-parser==0.15
142
+ - exceptiongroup==1.2.0
143
+ - fastapi==0.104.1
144
+ - ffmpy==0.3.1
145
+ - filelock==3.13.1
146
+ - fonttools==4.46.0
147
+ - frozenlist==1.4.0
148
+ - fsspec==2023.12.1
149
+ - google-auth==2.25.1
150
+ - google-auth-oauthlib==1.1.0
151
+ - gradio==4.12.0
152
+ - gradio-client==0.8.0
153
+ - grpcio==1.59.3
154
+ - h11==0.14.0
155
+ - httpcore==1.0.2
156
+ - httpx==0.26.0
157
+ - huggingface-hub==0.19.4
158
+ - hydra-core==1.3.2
159
+ - idna==3.6
160
+ - importlib-resources==6.1.1
161
+ - inquirer==3.1.4
162
+ - itsdangerous==2.1.2
163
+ - jmespath==1.0.1
164
+ - jsonargparse==4.27.1
165
+ - kiwisolver==1.4.5
166
+ - lightning==2.1.2
167
+ - lightning-api-access==0.0.5
168
+ - lightning-cloud==0.5.52
169
+ - lightning-fabric==2.1.2
170
+ - lightning-utilities==0.10.0
171
+ - line-profiler==4.1.2
172
+ - markdown==3.5.1
173
+ - markdown-it-py==3.0.0
174
+ - markupsafe==2.1.3
175
+ - matplotlib==3.8.2
176
+ - mdurl==0.1.2
177
+ - mpmath==1.3.0
178
+ - multidict==6.0.4
179
+ - networkx==3.2.1
180
+ - numpy==1.26.2
181
+ - nvidia-cublas-cu12==12.1.3.1
182
+ - nvidia-cuda-cupti-cu12==12.1.105
183
+ - nvidia-cuda-nvrtc-cu12==12.1.105
184
+ - nvidia-cuda-runtime-cu12==12.1.105
185
+ - nvidia-cudnn-cu12==8.9.2.26
186
+ - nvidia-cufft-cu12==11.0.2.54
187
+ - nvidia-curand-cu12==10.3.2.106
188
+ - nvidia-cusolver-cu12==11.4.5.107
189
+ - nvidia-cusparse-cu12==12.1.0.106
190
+ - nvidia-nccl-cu12==2.18.1
191
+ - nvidia-nvjitlink-cu12==12.3.101
192
+ - nvidia-nvtx-cu12==12.1.105
193
+ - oauthlib==3.2.2
194
+ - omegaconf==2.3.0
195
+ - ordered-set==4.1.0
196
+ - orjson==3.9.10
197
+ - packaging==23.2
198
+ - pandas==2.1.3
199
+ - pillow==10.1.0
200
+ - protobuf==4.23.4
201
+ - psutil==5.9.6
202
+ - pyasn1==0.5.1
203
+ - pyasn1-modules==0.3.0
204
+ - pydantic==2.5.2
205
+ - pydantic-core==2.14.5
206
+ - pydub==0.25.1
207
+ - pygments==2.17.2
208
+ - pyjwt==2.8.0
209
+ - pyparsing==3.1.1
210
+ - python-editor==1.0.4
211
+ - python-multipart==0.0.6
212
+ - pytorch-lightning==2.1.2
213
+ - readchar==4.0.5
214
+ - redis==5.0.1
215
+ - regex==2023.10.3
216
+ - requests-oauthlib==1.3.1
217
+ - rich==13.7.0
218
+ - rsa==4.9
219
+ - s3fs==2023.12.1
220
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221
+ - safetensors==0.4.1
222
+ - semantic-version==2.10.0
223
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224
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225
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226
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227
+ - sympy==1.12
228
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229
+ - tensorboard-data-server==0.7.2
230
+ - tensorboardx==2.6.2.2
231
+ - tokenizers==0.15.0
232
+ - tomlkit==0.12.0
233
+ - toolz==0.12.0
234
+ - torch==2.1.1
235
+ - torchmetrics==1.2.1
236
+ - torchvision==0.16.1
237
+ - tqdm==4.66.1
238
+ - traitlets==5.14.0
239
+ - transformers==4.35.2
240
+ - triton==2.1.0
241
+ - typer==0.9.0
242
+ - types-python-dateutil==2.8.19.14
243
+ - typeshed-client==2.4.0
244
+ - typing-extensions==4.9.0
245
+ - tzdata==2023.3
246
+ - urllib3==2.0.7
247
+ - uvicorn==0.24.0.post1
248
+ - wcwidth==0.2.12
249
+ - websocket-client==1.7.0
250
+ - websockets==11.0.3
251
+ - werkzeug==3.0.1
252
+ - wrapt==1.16.0
253
+ - yarl==1.9.4