Duplicate from posit/shiny-for-r-template

Co-authored-by: Gordon Shotwell <gordon-posit@users.noreply.huggingface.co>

.gitattributes

@@ -0,0 +1,34 @@
+*.7z filter=lfs diff=lfs merge=lfs -text
+*.arrow filter=lfs diff=lfs merge=lfs -text
+*.bin filter=lfs diff=lfs merge=lfs -text
+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.ckpt filter=lfs diff=lfs merge=lfs -text
+*.ftz filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.h5 filter=lfs diff=lfs merge=lfs -text
+*.joblib filter=lfs diff=lfs merge=lfs -text
+*.lfs.* filter=lfs diff=lfs merge=lfs -text
+*.mlmodel filter=lfs diff=lfs merge=lfs -text
+*.model filter=lfs diff=lfs merge=lfs -text
+*.msgpack filter=lfs diff=lfs merge=lfs -text
+*.npy filter=lfs diff=lfs merge=lfs -text
+*.npz filter=lfs diff=lfs merge=lfs -text
+*.onnx filter=lfs diff=lfs merge=lfs -text
+*.ot filter=lfs diff=lfs merge=lfs -text
+*.parquet filter=lfs diff=lfs merge=lfs -text
+*.pb filter=lfs diff=lfs merge=lfs -text
+*.pickle filter=lfs diff=lfs merge=lfs -text
+*.pkl filter=lfs diff=lfs merge=lfs -text
+*.pt filter=lfs diff=lfs merge=lfs -text
+*.pth filter=lfs diff=lfs merge=lfs -text
+*.rar filter=lfs diff=lfs merge=lfs -text
+*.safetensors filter=lfs diff=lfs merge=lfs -text
+saved_model/**/* filter=lfs diff=lfs merge=lfs -text
+*.tar.* filter=lfs diff=lfs merge=lfs -text
+*.tflite filter=lfs diff=lfs merge=lfs -text
+*.tgz filter=lfs diff=lfs merge=lfs -text
+*.wasm filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text
+*tfevents* filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -0,0 +1 @@
+.DS_Store

Dockerfile

@@ -0,0 +1,14 @@
+FROM rocker/r-base:latest
+
+WORKDIR /code
+
+RUN install2.r --error \
+    shiny \
+    dplyr \
+    ggplot2 \
+    readr \
+    ggExtra
+    
+COPY . .
+
+CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]

README.md

@@ -0,0 +1,10 @@
+---
+title: Shiny for R template
+emoji: 📚
+colorFrom: blue
+colorTo: yellow
+sdk: docker
+pinned: false
+---
+
+Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference

app.R

@@ -0,0 +1,58 @@
+library(shiny)
+library(bslib)
+library(dplyr)
+library(ggplot2)
+
+df <- readr::read_csv("penguins.csv")
+# Find subset of columns that are suitable for scatter plot
+df_num <- df |> select(where(is.numeric), -Year)
+
+ui <- page_sidebar(
+  theme = bs_theme(bootswatch = "minty"),
+  title = "Penguins explorer",
+  sidebar = sidebar(
+    varSelectInput("xvar", "X variable", df_num, selected = "Bill Length (mm)"),
+    varSelectInput("yvar", "Y variable", df_num, selected = "Bill Depth (mm)"),
+    checkboxGroupInput("species", "Filter by species",
+      choices = unique(df$Species), selected = unique(df$Species)
+    ),
+    hr(), # Add a horizontal rule
+    checkboxInput("by_species", "Show species", TRUE),
+    checkboxInput("show_margins", "Show marginal plots", TRUE),
+    checkboxInput("smooth", "Add smoother"),
+  ),
+  plotOutput("scatter")
+)
+
+server <- function(input, output, session) {
+  subsetted <- reactive({
+    req(input$species)
+    df |> filter(Species %in% input$species)
+  })
+
+  output$scatter <- renderPlot(
+    {
+      p <- ggplot(subsetted(), aes(!!input$xvar, !!input$yvar)) +
+        theme_light() +
+        list(
+          theme(legend.position = "bottom"),
+          if (input$by_species) aes(color = Species),
+          geom_point(),
+          if (input$smooth) geom_smooth()
+        )
+
+      if (input$show_margins) {
+        margin_type <- if (input$by_species) "density" else "histogram"
+        p <- p |> ggExtra::ggMarginal(
+          type = margin_type, margins = "both",
+          size = 8, groupColour = input$by_species, groupFill = input$by_species
+        )
+      }
+
+      p
+    },
+    res = 100
+  )
+}
+
+shinyApp(ui, server)

penguins.csv

@@ -0,0 +1,345 @@
+Species,Island,Bill Length (mm),Bill Depth (mm),Flipper Length (mm),Body Mass (g),Sex,Year
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+Adelie,Torgersen,39.5,17.4,186,3800,female,2007
+Adelie,Torgersen,40.3,18,195,3250,female,2007
+Adelie,Torgersen,NA,NA,NA,NA,NA,2007
+Adelie,Torgersen,36.7,19.3,193,3450,female,2007
+Adelie,Torgersen,39.3,20.6,190,3650,male,2007
+Adelie,Torgersen,38.9,17.8,181,3625,female,2007
+Adelie,Torgersen,39.2,19.6,195,4675,male,2007
+Adelie,Torgersen,34.1,18.1,193,3475,NA,2007
+Adelie,Torgersen,42,20.2,190,4250,NA,2007
+Adelie,Torgersen,37.8,17.1,186,3300,NA,2007
+Adelie,Torgersen,37.8,17.3,180,3700,NA,2007
+Adelie,Torgersen,41.1,17.6,182,3200,female,2007
+Adelie,Torgersen,38.6,21.2,191,3800,male,2007
+Adelie,Torgersen,34.6,21.1,198,4400,male,2007
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+Adelie,Torgersen,46,21.5,194,4200,male,2007
+Adelie,Biscoe,37.8,18.3,174,3400,female,2007
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+Adelie,Dream,37.5,18.9,179,2975,NA,2007
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