app.py

import gradio as gr
import os
import numpy as np
os.system("pip install pdfminer.six rank_bm25 torch transformers")

from gradio.mix import Series
#import re
from rank_bm25 import BM25Okapi
import string 
import torch
from transformers import pipeline
import pdfminer
from pdfminer.high_level import extract_text

len_doc = 500
overlap = 15 
param_top_k_retriver = 15
param_top_k_ranker = 3

def read_pdf(file):
  text = extract_text(file.name)
  # Split text into smaller docs
  docs = []
  
  i = 0
  while i < len(text):
      docs.append(text[i:i+len_doc])
      i = i + len_doc - overlap
  return docs
  
  # We use BM25 as retriver which will do 1st round of candidate filtering based on word based matching

def bm25_tokenizer(text):
    stop_w = ['a', 'the', 'am', 'is' , 'are', 'who', 'how', 'where', 'when', 'why', 'what']
    tokenized_doc = []
    for token in text.lower().split():
        token = token.strip(string.punctuation)

        if len(token) > 0 and token not in stop_w:
            tokenized_doc.append(token)
    return tokenized_doc

def retrieval(query, top_k_retriver, docs, bm25_):

    bm25_scores = bm25_.get_scores(bm25_tokenizer(query))
    top_n = np.argsort(bm25_scores)[::-1][:top_k_retriver]
    bm25_hits = [{'corpus_id': idx, 
                  'score': bm25_scores[idx], 
                  'docs':docs[idx]} for idx in top_n if bm25_scores[idx] > 0]
    bm25_hits = sorted(bm25_hits, key=lambda x: x['score'], reverse=True)
    
    return bm25_hits

def qa_ranker(query, docs_, top_k_ranker):
    ans = []
    for doc in docs_:
        answer = qa_model(question = query, 
                            context = doc)
        answer['doc'] = doc
        ans.append(answer)
    return sorted(ans, key=lambda x: x['score'], reverse=True)[:top_k_ranker]

def cstr(s, color='black'):
    return "<text style=color:{}>{}</text>".format(color, s)
def cstr_bold(s, color='black'):
    return "<text style=color:{}><b>{}</b></text>".format(color, s)
def cstr_break(s, color='black'):
    return "<text style=color:{}><br>{}</text>".format(color, s)

def print_colored(text, start_idx, end_idx, confidence):
    conf_str = '- Confidence: ' +  confidence
    a = cstr(' '.join([text[:start_idx], \
                        cstr_bold(text[start_idx:end_idx], color='blue'), \
                        text[end_idx:], \
                        cstr_break(conf_str, color='grey')]), color='black')
    return a
       
def final_qa_pipeline(file, query, model_nm):
    docs = read_pdf(file)
    tokenized_corpus = []
    for doc in docs:
        tokenized_corpus.append(bm25_tokenizer(doc))
    
    bm25 = BM25Okapi(tokenized_corpus)
    
    top_k_retriver, top_k_ranker = param_top_k_retriver, param_top_k_ranker
    lvl1 = retrieval(query, top_k_retriver, docs, bm25)

    qa_model = pipeline("question-answering", 
                    #model = "deepset/minilm-uncased-squad2")
                    model = "deepset/"+ str(model_nm))

    if len(lvl1) > 0:
        fnl_rank = qa_ranker(query, [l["docs"] for l in lvl1], top_k_ranker)
        top1 = print_colored(fnl_rank[0]['doc'], fnl_rank[0]['start'], fnl_rank[0]['end'], str(np.round(100*fnl_rank[0]["score"],1))+"%")  
        if len(lvl1)>1:
            top2 = print_colored(fnl_rank[1]['doc'], fnl_rank[1]['start'], fnl_rank[1]['end'], str(np.round(100*fnl_rank[1]["score"],1))+"%")
        else:
            top2 = "None"
        return (top1, top2)
    else:
        return ("No match","No match")
        
examples = [
    [os.path.abspath("dbs-annual-report-2020.pdf"), "how many times has DBS won Best bank in the world ?"],
    [os.path.abspath("dbs-annual-report-2020.pdf"), "what is PURE ?"],
    [os.path.abspath("dbs-annual-report-2020.pdf"), "how much dividend was paid to shareholders ?"],
    [os.path.abspath("dbs-annual-report-2020.pdf"), "what are the key risks ?"],
    [os.path.abspath("dbs-annual-report-2020.pdf"), "what is the sustainability focus ?"],
    [os.path.abspath("NASDAQ_AAPL_2020.pdf"), "how much are the outstanding shares ?"],
    [os.path.abspath("NASDAQ_AAPL_2020.pdf"), "what is competitors strategy ?"],
    [os.path.abspath("NASDAQ_AAPL_2020.pdf"), "who is the chief executive officer ?"],
    [os.path.abspath("NASDAQ_MSFT_2020.pdf"), "How much is the guided revenue for next quarter?"],
]

iface = gr.Interface(
   fn = final_qa_pipeline,
   inputs = [gr.inputs.File(label="input pdf file"), gr.inputs.Textbox(label="Question:"), gr.inputs.Dropdown(choices=["minilm-uncased-squad2","roberta-base-squad2"],label="Model")],
   outputs = [gr.outputs.HTML(label="Top 1 answer"), gr.outputs.HTML(label="Top 2 answer")],
   examples=examples,
   theme = "grass",
   title = "Question Answering on annual reports",
   description = "Navigate long annual reports by using Machine learning to answer your questions. \nSimply upload any annual report pdf you are interested in and ask model a question OR load an example from below."
   )
iface.launch(enable_queue = True)